Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03415

Experiment: McCas_formate_complete sulfate 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03405 and MMJJ_RS03410 overlap by 8 nucleotidesMMJJ_RS03410 and MMJJ_RS03415 are separated by 3 nucleotidesMMJJ_RS03415 and MMJJ_RS03420 overlap by 8 nucleotidesMMJJ_RS03420 and MMJJ_RS03425 are separated by 0 nucleotidesMMJJ_RS03425 and MMJJ_RS03430 are separated by 220 nucleotides MMJJ_RS03405: MMJJ_RS03405 - hypothetical protein, at 640,901 to 642,241 _RS03405 MMJJ_RS03410: MMJJ_RS03410 - hypothetical protein, at 642,234 to 642,650 _RS03410 MMJJ_RS03415: MMJJ_RS03415 - hypothetical protein, at 642,654 to 643,091 _RS03415 MMJJ_RS03420: MMJJ_RS03420 - hypothetical protein, at 643,084 to 643,359 _RS03420 MMJJ_RS03425: MMJJ_RS03425 - DUF2080 family transposase-associated protein, at 643,360 to 643,485 _RS03425 MMJJ_RS03430: MMJJ_RS03430 - winged helix-turn-helix domain-containing protein, at 643,706 to 644,071 _RS03430 Position (kb) 642 643 644Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 641.697 kb on + strandat 641.728 kb on + strand, within MMJJ_RS03405at 641.735 kb on + strand, within MMJJ_RS03405at 641.735 kb on + strand, within MMJJ_RS03405at 641.737 kb on + strand, within MMJJ_RS03405at 641.777 kb on + strand, within MMJJ_RS03405at 641.789 kb on - strand, within MMJJ_RS03405at 641.879 kb on - strand, within MMJJ_RS03405at 641.903 kb on + strand, within MMJJ_RS03405at 641.907 kb on - strand, within MMJJ_RS03405at 642.103 kb on + strand, within MMJJ_RS03405at 642.161 kb on - strandat 642.208 kb on + strandat 642.238 kb on + strandat 642.238 kb on + strandat 642.285 kb on - strand, within MMJJ_RS03410at 642.329 kb on - strand, within MMJJ_RS03410at 642.368 kb on - strand, within MMJJ_RS03410at 642.420 kb on - strand, within MMJJ_RS03410at 642.508 kb on - strand, within MMJJ_RS03410at 642.540 kb on - strand, within MMJJ_RS03410at 642.595 kb on - strand, within MMJJ_RS03410at 642.656 kb on + strandat 642.734 kb on + strand, within MMJJ_RS03415at 642.741 kb on - strand, within MMJJ_RS03415at 642.795 kb on + strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.873 kb on - strand, within MMJJ_RS03415at 642.891 kb on - strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.957 kb on - strand, within MMJJ_RS03415at 642.958 kb on + strand, within MMJJ_RS03415at 642.988 kb on - strand, within MMJJ_RS03415at 643.065 kb on + strandat 643.071 kb on + strandat 643.071 kb on + strandat 643.108 kb on - strandat 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.133 kb on - strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.188 kb on + strand, within MMJJ_RS03420at 643.213 kb on - strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.218 kb on + strand, within MMJJ_RS03420at 643.232 kb on + strand, within MMJJ_RS03420at 643.238 kb on - strand, within MMJJ_RS03420at 643.239 kb on + strand, within MMJJ_RS03420at 643.279 kb on - strand, within MMJJ_RS03420at 643.280 kb on + strand, within MMJJ_RS03420at 643.312 kb on - strand, within MMJJ_RS03420at 643.313 kb on + strand, within MMJJ_RS03420at 643.313 kb on + strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.318 kb on + strand, within MMJJ_RS03420at 643.319 kb on - strand, within MMJJ_RS03420at 643.320 kb on + strand, within MMJJ_RS03420at 643.320 kb on + strand, within MMJJ_RS03420at 643.362 kb on + strandat 643.393 kb on - strand, within MMJJ_RS03425at 643.395 kb on - strand, within MMJJ_RS03425at 643.404 kb on - strand, within MMJJ_RS03425at 643.405 kb on + strand, within MMJJ_RS03425at 643.466 kb on + strand, within MMJJ_RS03425at 643.591 kb on - strandat 643.591 kb on - strandat 643.591 kb on - strandat 643.591 kb on - strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.661 kb on - strandat 643.667 kb on + strandat 643.682 kb on - strandat 643.779 kb on + strand, within MMJJ_RS03430at 643.835 kb on + strandat 643.845 kb on - strand, within MMJJ_RS03430at 643.863 kb on - strand, within MMJJ_RS03430at 643.906 kb on - strand, within MMJJ_RS03430at 643.918 kb on - strand, within MMJJ_RS03430at 643.954 kb on + strand, within MMJJ_RS03430at 643.956 kb on + strandat 644.001 kb on - strand, within MMJJ_RS03430at 644.001 kb on - strand, within MMJJ_RS03430at 644.020 kb on - strand, within MMJJ_RS03430at 644.020 kb on - strand, within MMJJ_RS03430at 644.021 kb on + strand, within MMJJ_RS03430at 644.045 kb on + strandat 644.069 kb on - strandat 644.083 kb on + strandat 644.083 kb on + strandat 644.085 kb on - strandat 644.085 kb on - strandat 644.090 kb on + strandat 644.090 kb on + strandat 644.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sulfate 125 mM
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641,697 + +1.6
641,728 + MMJJ_RS03405 0.62 -0.2
641,735 + MMJJ_RS03405 0.62 -3.0
641,735 + MMJJ_RS03405 0.62 +2.7
641,737 + MMJJ_RS03405 0.62 -2.5
641,777 + MMJJ_RS03405 0.65 -2.3
641,789 - MMJJ_RS03405 0.66 -2.1
641,879 - MMJJ_RS03405 0.73 -1.5
641,903 + MMJJ_RS03405 0.75 +1.5
641,907 - MMJJ_RS03405 0.75 -0.7
642,103 + MMJJ_RS03405 0.90 +0.6
642,161 - +0.3
642,208 + -3.1
642,238 + +0.9
642,238 + -1.9
642,285 - MMJJ_RS03410 0.12 +1.5
642,329 - MMJJ_RS03410 0.23 +0.2
642,368 - MMJJ_RS03410 0.32 -1.1
642,420 - MMJJ_RS03410 0.45 +2.5
642,508 - MMJJ_RS03410 0.66 +1.7
642,540 - MMJJ_RS03410 0.73 +2.7
642,595 - MMJJ_RS03410 0.87 -1.2
642,656 + +1.2
642,734 + MMJJ_RS03415 0.18 -2.4
642,741 - MMJJ_RS03415 0.20 -2.5
642,795 + MMJJ_RS03415 0.32 -0.0
642,821 - MMJJ_RS03415 0.38 -1.8
642,821 - MMJJ_RS03415 0.38 -3.0
642,873 - MMJJ_RS03415 0.50 -4.0
642,891 - MMJJ_RS03415 0.54 +2.5
642,899 + MMJJ_RS03415 0.56 +1.5
642,899 + MMJJ_RS03415 0.56 -4.9
642,951 - MMJJ_RS03415 0.68 +0.4
642,951 - MMJJ_RS03415 0.68 -1.4
642,951 - MMJJ_RS03415 0.68 -2.1
642,957 - MMJJ_RS03415 0.69 +0.3
642,958 + MMJJ_RS03415 0.69 -5.4
642,988 - MMJJ_RS03415 0.76 -3.4
643,065 + +1.6
643,071 + -1.5
643,071 + -3.8
643,108 - +0.2
643,116 + MMJJ_RS03420 0.12 +1.4
643,116 + MMJJ_RS03420 0.12 -2.1
643,116 + MMJJ_RS03420 0.12 -1.8
643,133 - MMJJ_RS03420 0.18 -3.0
643,134 + MMJJ_RS03420 0.18 -2.0
643,134 + MMJJ_RS03420 0.18 +0.2
643,188 + MMJJ_RS03420 0.38 -1.0
643,213 - MMJJ_RS03420 0.47 -0.1
643,214 + MMJJ_RS03420 0.47 +2.2
643,214 + MMJJ_RS03420 0.47 -2.3
643,214 + MMJJ_RS03420 0.47 -1.2
643,217 - MMJJ_RS03420 0.48 +1.9
643,217 - MMJJ_RS03420 0.48 +0.2
643,218 + MMJJ_RS03420 0.49 +0.8
643,232 + MMJJ_RS03420 0.54 +0.1
643,238 - MMJJ_RS03420 0.56 -2.8
643,239 + MMJJ_RS03420 0.56 +1.6
643,279 - MMJJ_RS03420 0.71 +1.1
643,280 + MMJJ_RS03420 0.71 -0.5
643,312 - MMJJ_RS03420 0.83 -1.6
643,313 + MMJJ_RS03420 0.83 -0.2
643,313 + MMJJ_RS03420 0.83 -3.3
643,317 - MMJJ_RS03420 0.84 -0.5
643,317 - MMJJ_RS03420 0.84 -1.2
643,317 - MMJJ_RS03420 0.84 +0.3
643,317 - MMJJ_RS03420 0.84 +0.2
643,318 + MMJJ_RS03420 0.85 +0.9
643,319 - MMJJ_RS03420 0.85 +0.6
643,320 + MMJJ_RS03420 0.86 -1.6
643,320 + MMJJ_RS03420 0.86 -1.3
643,362 + +0.9
643,393 - MMJJ_RS03425 0.26 -2.7
643,395 - MMJJ_RS03425 0.28 +1.7
643,404 - MMJJ_RS03425 0.35 -0.2
643,405 + MMJJ_RS03425 0.36 -1.7
643,466 + MMJJ_RS03425 0.84 -4.0
643,591 - +0.2
643,591 - +0.0
643,591 - +2.3
643,591 - -0.1
643,592 + +2.8
643,592 + -1.5
643,592 + -1.9
643,592 + -2.0
643,661 - -2.4
643,667 + +1.0
643,682 - -1.9
643,779 + MMJJ_RS03430 0.20 -0.6
643,835 + +2.6
643,845 - MMJJ_RS03430 0.38 -1.1
643,863 - MMJJ_RS03430 0.43 -1.6
643,906 - MMJJ_RS03430 0.55 -2.3
643,918 - MMJJ_RS03430 0.58 -0.6
643,954 + MMJJ_RS03430 0.68 +1.0
643,956 + +1.0
644,001 - MMJJ_RS03430 0.81 -3.8
644,001 - MMJJ_RS03430 0.81 -0.2
644,020 - MMJJ_RS03430 0.86 +1.8
644,020 - MMJJ_RS03430 0.86 +0.4
644,021 + MMJJ_RS03430 0.86 +1.2
644,045 + -0.6
644,069 - -4.7
644,083 + -0.9
644,083 + +0.0
644,085 - -0.3
644,085 - -3.2
644,090 + -3.1
644,090 + +1.9
644,091 - -4.1

Or see this region's nucleotide sequence