Experiment: McCas_formate_complete sulfate 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03365 and MMJJ_RS03370 overlap by 20 nucleotides MMJJ_RS03370 and MMJJ_RS03375 are separated by 18 nucleotides MMJJ_RS03375 and MMJJ_RS03380 are separated by 65 nucleotides MMJJ_RS03380 and MMJJ_RS03385 are separated by 5 nucleotides MMJJ_RS03385 and MMJJ_RS03390 are separated by 0 nucleotides MMJJ_RS03390 and MMJJ_RS09295 are separated by 7 nucleotides
MMJJ_RS03365: MMJJ_RS03365 - hypothetical protein, at 637,142 to 638,623
_RS03365
MMJJ_RS03370: MMJJ_RS03370 - hypothetical protein, at 638,604 to 638,948
_RS03370
MMJJ_RS03375: MMJJ_RS03375 - hypothetical protein, at 638,967 to 639,152
_RS03375
MMJJ_RS03380: MMJJ_RS03380 - hypothetical protein, at 639,218 to 639,454
_RS03380
MMJJ_RS03385: MMJJ_RS03385 - hypothetical protein, at 639,460 to 639,825
_RS03385
MMJJ_RS03390: MMJJ_RS03390 - hypothetical protein, at 639,826 to 640,062
_RS03390
MMJJ_RS09295: MMJJ_RS09295 - hypothetical protein, at 640,070 to 640,225
_RS09295
Position (kb) 638
639
640 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 638.001 kb on - strand, within MMJJ_RS03365 at 638.005 kb on - strand, within MMJJ_RS03365 at 638.005 kb on - strand, within MMJJ_RS03365 at 638.005 kb on - strand, within MMJJ_RS03365 at 638.006 kb on + strand, within MMJJ_RS03365 at 638.008 kb on + strand, within MMJJ_RS03365 at 638.051 kb on + strand, within MMJJ_RS03365 at 638.051 kb on + strand, within MMJJ_RS03365 at 638.054 kb on - strand, within MMJJ_RS03365 at 638.069 kb on + strand, within MMJJ_RS03365 at 638.098 kb on + strand, within MMJJ_RS03365 at 638.098 kb on + strand, within MMJJ_RS03365 at 638.193 kb on - strand, within MMJJ_RS03365 at 638.193 kb on - strand, within MMJJ_RS03365 at 638.193 kb on - strand, within MMJJ_RS03365 at 638.194 kb on + strand, within MMJJ_RS03365 at 638.194 kb on + strand, within MMJJ_RS03365 at 638.194 kb on + strand, within MMJJ_RS03365 at 638.195 kb on - strand, within MMJJ_RS03365 at 638.196 kb on + strand, within MMJJ_RS03365 at 638.252 kb on + strand, within MMJJ_RS03365 at 638.277 kb on + strand, within MMJJ_RS03365 at 638.296 kb on + strand, within MMJJ_RS03365 at 638.305 kb on - strand, within MMJJ_RS03365 at 638.312 kb on + strand, within MMJJ_RS03365 at 638.314 kb on + strand, within MMJJ_RS03365 at 638.329 kb on - strand, within MMJJ_RS03365 at 638.333 kb on - strand, within MMJJ_RS03365 at 638.334 kb on + strand, within MMJJ_RS03365 at 638.376 kb on - strand, within MMJJ_RS03365 at 638.377 kb on + strand, within MMJJ_RS03365 at 638.380 kb on - strand, within MMJJ_RS03365 at 638.380 kb on - strand, within MMJJ_RS03365 at 638.380 kb on - strand, within MMJJ_RS03365 at 638.380 kb on - strand, within MMJJ_RS03365 at 638.380 kb on - strand, within MMJJ_RS03365 at 638.380 kb on - strand, within MMJJ_RS03365 at 638.381 kb on + strand, within MMJJ_RS03365 at 638.381 kb on + strand, within MMJJ_RS03365 at 638.383 kb on + strand, within MMJJ_RS03365 at 638.392 kb on + strand, within MMJJ_RS03365 at 638.408 kb on + strand, within MMJJ_RS03365 at 638.446 kb on - strand, within MMJJ_RS03365 at 638.455 kb on - strand, within MMJJ_RS03365 at 638.456 kb on + strand, within MMJJ_RS03365 at 638.459 kb on + strand, within MMJJ_RS03365 at 638.459 kb on + strand, within MMJJ_RS03365 at 638.459 kb on + strand, within MMJJ_RS03365 at 638.460 kb on - strand, within MMJJ_RS03365 at 638.461 kb on + strand, within MMJJ_RS03365 at 638.461 kb on + strand, within MMJJ_RS03365 at 638.463 kb on - strand, within MMJJ_RS03365 at 638.464 kb on + strand, within MMJJ_RS03365 at 638.466 kb on - strand, within MMJJ_RS03365 at 638.466 kb on - strand, within MMJJ_RS03365 at 638.475 kb on + strand at 638.516 kb on + strand at 638.516 kb on + strand at 638.516 kb on + strand at 638.516 kb on + strand at 638.588 kb on - strand at 638.594 kb on - strand at 638.594 kb on - strand at 638.614 kb on - strand at 638.633 kb on - strand at 638.633 kb on - strand at 638.688 kb on - strand, within MMJJ_RS03370 at 638.689 kb on + strand, within MMJJ_RS03370 at 638.692 kb on - strand, within MMJJ_RS03370 at 638.705 kb on - strand, within MMJJ_RS03370 at 638.705 kb on - strand, within MMJJ_RS03370 at 638.754 kb on + strand, within MMJJ_RS03370 at 638.766 kb on - strand, within MMJJ_RS03370 at 638.887 kb on - strand, within MMJJ_RS03370 at 638.888 kb on + strand, within MMJJ_RS03370 at 638.891 kb on - strand, within MMJJ_RS03370 at 638.892 kb on + strand, within MMJJ_RS03370 at 638.922 kb on - strand at 638.923 kb on + strand at 638.943 kb on - strand at 638.943 kb on - strand at 638.951 kb on + strand at 638.988 kb on - strand, within MMJJ_RS03375 at 639.039 kb on + strand, within MMJJ_RS03375 at 639.078 kb on - strand, within MMJJ_RS03375 at 639.078 kb on - strand, within MMJJ_RS03375 at 639.080 kb on - strand, within MMJJ_RS03375 at 639.080 kb on - strand, within MMJJ_RS03375 at 639.121 kb on - strand, within MMJJ_RS03375 at 639.121 kb on - strand, within MMJJ_RS03375 at 639.129 kb on - strand, within MMJJ_RS03375 at 639.169 kb on + strand at 639.169 kb on + strand at 639.190 kb on - strand at 639.206 kb on - strand at 639.206 kb on - strand at 639.209 kb on - strand at 639.210 kb on + strand at 639.213 kb on + strand at 639.308 kb on - strand, within MMJJ_RS03380 at 639.308 kb on - strand, within MMJJ_RS03380 at 639.308 kb on - strand, within MMJJ_RS03380 at 639.309 kb on + strand, within MMJJ_RS03380 at 639.312 kb on - strand, within MMJJ_RS03380 at 639.313 kb on + strand, within MMJJ_RS03380 at 639.313 kb on + strand, within MMJJ_RS03380 at 639.320 kb on - strand, within MMJJ_RS03380 at 639.505 kb on + strand, within MMJJ_RS03385 at 639.523 kb on + strand at 639.563 kb on - strand, within MMJJ_RS03385 at 639.575 kb on + strand, within MMJJ_RS03385 at 639.591 kb on - strand, within MMJJ_RS03385 at 639.592 kb on + strand, within MMJJ_RS03385 at 639.623 kb on + strand, within MMJJ_RS03385 at 639.652 kb on + strand, within MMJJ_RS03385 at 639.690 kb on + strand, within MMJJ_RS03385 at 639.694 kb on - strand, within MMJJ_RS03385 at 639.715 kb on - strand, within MMJJ_RS03385 at 639.715 kb on - strand, within MMJJ_RS03385 at 639.743 kb on - strand, within MMJJ_RS03385 at 639.743 kb on - strand, within MMJJ_RS03385 at 639.744 kb on + strand, within MMJJ_RS03385 at 639.747 kb on - strand, within MMJJ_RS03385 at 639.748 kb on + strand, within MMJJ_RS03385 at 639.862 kb on + strand, within MMJJ_RS03390 at 640.071 kb on - strand at 640.072 kb on + strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.077 kb on - strand at 640.111 kb on - strand, within MMJJ_RS09295
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sulfate 125 mM remove 638,001 - MMJJ_RS03365 0.58 -0.6 638,005 - MMJJ_RS03365 0.58 -4.0 638,005 - MMJJ_RS03365 0.58 -0.0 638,005 - MMJJ_RS03365 0.58 -2.3 638,006 + MMJJ_RS03365 0.58 +0.6 638,008 + MMJJ_RS03365 0.58 +1.1 638,051 + MMJJ_RS03365 0.61 +0.5 638,051 + MMJJ_RS03365 0.61 +1.7 638,054 - MMJJ_RS03365 0.62 +1.4 638,069 + MMJJ_RS03365 0.63 -2.5 638,098 + MMJJ_RS03365 0.65 -0.5 638,098 + MMJJ_RS03365 0.65 +4.0 638,193 - MMJJ_RS03365 0.71 +5.0 638,193 - MMJJ_RS03365 0.71 +1.5 638,193 - MMJJ_RS03365 0.71 -0.6 638,194 + MMJJ_RS03365 0.71 +0.1 638,194 + MMJJ_RS03365 0.71 +1.0 638,194 + MMJJ_RS03365 0.71 +1.6 638,195 - MMJJ_RS03365 0.71 +1.0 638,196 + MMJJ_RS03365 0.71 -1.0 638,252 + MMJJ_RS03365 0.75 +1.6 638,277 + MMJJ_RS03365 0.77 -0.9 638,296 + MMJJ_RS03365 0.78 +0.9 638,305 - MMJJ_RS03365 0.78 -0.3 638,312 + MMJJ_RS03365 0.79 +0.0 638,314 + MMJJ_RS03365 0.79 +0.4 638,329 - MMJJ_RS03365 0.80 -0.0 638,333 - MMJJ_RS03365 0.80 -2.7 638,334 + MMJJ_RS03365 0.80 -0.1 638,376 - MMJJ_RS03365 0.83 +2.6 638,377 + MMJJ_RS03365 0.83 -0.4 638,380 - MMJJ_RS03365 0.84 +0.6 638,380 - MMJJ_RS03365 0.84 -1.1 638,380 - MMJJ_RS03365 0.84 +0.6 638,380 - MMJJ_RS03365 0.84 -2.1 638,380 - MMJJ_RS03365 0.84 -0.6 638,380 - MMJJ_RS03365 0.84 -1.5 638,381 + MMJJ_RS03365 0.84 -4.0 638,381 + MMJJ_RS03365 0.84 +1.4 638,383 + MMJJ_RS03365 0.84 -0.8 638,392 + MMJJ_RS03365 0.84 +1.0 638,408 + MMJJ_RS03365 0.85 -0.9 638,446 - MMJJ_RS03365 0.88 -2.0 638,455 - MMJJ_RS03365 0.89 -2.1 638,456 + MMJJ_RS03365 0.89 +0.6 638,459 + MMJJ_RS03365 0.89 +2.7 638,459 + MMJJ_RS03365 0.89 +0.7 638,459 + MMJJ_RS03365 0.89 -3.4 638,460 - MMJJ_RS03365 0.89 +2.0 638,461 + MMJJ_RS03365 0.89 -3.2 638,461 + MMJJ_RS03365 0.89 -2.7 638,463 - MMJJ_RS03365 0.89 +1.9 638,464 + MMJJ_RS03365 0.89 -0.4 638,466 - MMJJ_RS03365 0.89 -0.7 638,466 - MMJJ_RS03365 0.89 +2.4 638,475 + -2.8 638,516 + +1.1 638,516 + +2.7 638,516 + -0.8 638,516 + -2.5 638,588 - +1.3 638,594 - +0.9 638,594 - -0.4 638,614 - +0.2 638,633 - +2.2 638,633 - -0.1 638,688 - MMJJ_RS03370 0.24 +0.2 638,689 + MMJJ_RS03370 0.25 -1.0 638,692 - MMJJ_RS03370 0.26 -1.0 638,705 - MMJJ_RS03370 0.29 +0.8 638,705 - MMJJ_RS03370 0.29 -0.8 638,754 + MMJJ_RS03370 0.43 -2.3 638,766 - MMJJ_RS03370 0.47 -1.6 638,887 - MMJJ_RS03370 0.82 +0.3 638,888 + MMJJ_RS03370 0.82 +1.4 638,891 - MMJJ_RS03370 0.83 +0.0 638,892 + MMJJ_RS03370 0.83 -3.4 638,922 - +1.7 638,923 + -1.6 638,943 - +1.2 638,943 - +1.0 638,951 + -0.9 638,988 - MMJJ_RS03375 0.11 -0.7 639,039 + MMJJ_RS03375 0.39 -2.2 639,078 - MMJJ_RS03375 0.60 +0.8 639,078 - MMJJ_RS03375 0.60 -3.3 639,080 - MMJJ_RS03375 0.61 +3.3 639,080 - MMJJ_RS03375 0.61 +2.8 639,121 - MMJJ_RS03375 0.83 +2.8 639,121 - MMJJ_RS03375 0.83 +1.9 639,129 - MMJJ_RS03375 0.87 +0.6 639,169 + -1.1 639,169 + +0.5 639,190 - -2.3 639,206 - -3.4 639,206 - -1.1 639,209 - -2.2 639,210 + +1.7 639,213 + +0.0 639,308 - MMJJ_RS03380 0.38 -2.1 639,308 - MMJJ_RS03380 0.38 +3.0 639,308 - MMJJ_RS03380 0.38 -3.7 639,309 + MMJJ_RS03380 0.38 -2.9 639,312 - MMJJ_RS03380 0.40 +2.1 639,313 + MMJJ_RS03380 0.40 +1.7 639,313 + MMJJ_RS03380 0.40 -2.7 639,320 - MMJJ_RS03380 0.43 +2.2 639,505 + MMJJ_RS03385 0.12 -2.3 639,523 + +0.2 639,563 - MMJJ_RS03385 0.28 -0.4 639,575 + MMJJ_RS03385 0.31 +1.2 639,591 - MMJJ_RS03385 0.36 -3.4 639,592 + MMJJ_RS03385 0.36 -1.0 639,623 + MMJJ_RS03385 0.45 -2.3 639,652 + MMJJ_RS03385 0.52 -3.2 639,690 + MMJJ_RS03385 0.63 -0.1 639,694 - MMJJ_RS03385 0.64 -2.9 639,715 - MMJJ_RS03385 0.70 +0.2 639,715 - MMJJ_RS03385 0.70 -0.3 639,743 - MMJJ_RS03385 0.77 +1.1 639,743 - MMJJ_RS03385 0.77 -4.0 639,744 + MMJJ_RS03385 0.78 +0.0 639,747 - MMJJ_RS03385 0.78 -1.7 639,748 + MMJJ_RS03385 0.79 +1.7 639,862 + MMJJ_RS03390 0.15 -0.9 640,071 - -3.5 640,072 + +3.3 640,075 - +1.0 640,075 - +0.0 640,075 - -0.0 640,075 - -3.2 640,075 - -0.6 640,075 - +1.0 640,077 - +0.4 640,111 - MMJJ_RS09295 0.26 -3.1
Or see this region's nucleotide sequence