Experiment: McCas_formate_complete sulfate 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00645 and MMJJ_RS00650 are separated by 52 nucleotides MMJJ_RS00650 and MMJJ_RS00655 are separated by 8 nucleotides MMJJ_RS00655 and MMJJ_RS00660 are separated by 147 nucleotides
MMJJ_RS00645: MMJJ_RS00645 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 124,879 to 126,282
_RS00645
MMJJ_RS00650: MMJJ_RS00650 - cation:proton antiporter, at 126,335 to 127,501
_RS00650
MMJJ_RS00655: MMJJ_RS00655 - CBS domain-containing protein, at 127,510 to 127,986
_RS00655
MMJJ_RS00660: MMJJ_RS00660 - putative beta-lysine N-acetyltransferase, at 128,134 to 128,958
_RS00660
Position (kb) 126
127
128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 125.408 kb on - strand, within MMJJ_RS00645 at 125.409 kb on + strand, within MMJJ_RS00645 at 125.444 kb on + strand, within MMJJ_RS00645 at 125.451 kb on - strand, within MMJJ_RS00645 at 125.598 kb on - strand, within MMJJ_RS00645 at 125.598 kb on - strand, within MMJJ_RS00645 at 125.599 kb on + strand, within MMJJ_RS00645 at 125.614 kb on + strand, within MMJJ_RS00645 at 125.659 kb on + strand, within MMJJ_RS00645 at 125.661 kb on - strand, within MMJJ_RS00645 at 125.662 kb on + strand, within MMJJ_RS00645 at 125.662 kb on + strand, within MMJJ_RS00645 at 125.663 kb on - strand, within MMJJ_RS00645 at 125.667 kb on + strand, within MMJJ_RS00645 at 125.667 kb on + strand, within MMJJ_RS00645 at 125.669 kb on - strand, within MMJJ_RS00645 at 125.670 kb on + strand, within MMJJ_RS00645 at 125.670 kb on + strand, within MMJJ_RS00645 at 125.670 kb on + strand, within MMJJ_RS00645 at 125.714 kb on + strand, within MMJJ_RS00645 at 125.733 kb on + strand, within MMJJ_RS00645 at 125.804 kb on - strand, within MMJJ_RS00645 at 125.805 kb on + strand, within MMJJ_RS00645 at 125.826 kb on + strand, within MMJJ_RS00645 at 125.860 kb on + strand, within MMJJ_RS00645 at 125.860 kb on + strand, within MMJJ_RS00645 at 125.884 kb on - strand, within MMJJ_RS00645 at 125.885 kb on + strand, within MMJJ_RS00645 at 125.901 kb on + strand, within MMJJ_RS00645 at 125.903 kb on - strand, within MMJJ_RS00645 at 125.903 kb on - strand, within MMJJ_RS00645 at 125.904 kb on + strand, within MMJJ_RS00645 at 125.963 kb on - strand, within MMJJ_RS00645 at 125.981 kb on - strand, within MMJJ_RS00645 at 126.046 kb on - strand, within MMJJ_RS00645 at 126.076 kb on + strand, within MMJJ_RS00645 at 126.197 kb on - strand at 126.281 kb on + strand at 126.281 kb on + strand at 126.331 kb on - strand at 126.332 kb on + strand at 126.332 kb on + strand at 126.333 kb on - strand at 126.337 kb on + strand at 126.353 kb on - strand at 126.370 kb on - strand at 126.370 kb on - strand at 126.370 kb on - strand at 126.370 kb on - strand at 126.371 kb on + strand at 126.386 kb on + strand at 126.393 kb on + strand at 126.524 kb on + strand, within MMJJ_RS00650 at 126.542 kb on - strand, within MMJJ_RS00650 at 126.574 kb on - strand, within MMJJ_RS00650 at 126.587 kb on - strand, within MMJJ_RS00650 at 126.588 kb on + strand, within MMJJ_RS00650 at 126.593 kb on - strand, within MMJJ_RS00650 at 126.594 kb on + strand, within MMJJ_RS00650 at 126.615 kb on + strand, within MMJJ_RS00650 at 126.641 kb on - strand, within MMJJ_RS00650 at 126.663 kb on - strand, within MMJJ_RS00650 at 126.663 kb on - strand, within MMJJ_RS00650 at 126.663 kb on - strand, within MMJJ_RS00650 at 126.663 kb on - strand, within MMJJ_RS00650 at 126.663 kb on - strand, within MMJJ_RS00650 at 126.684 kb on + strand, within MMJJ_RS00650 at 126.835 kb on - strand, within MMJJ_RS00650 at 126.836 kb on + strand, within MMJJ_RS00650 at 127.002 kb on + strand, within MMJJ_RS00650 at 127.115 kb on - strand, within MMJJ_RS00650 at 127.130 kb on + strand, within MMJJ_RS00650 at 127.141 kb on - strand, within MMJJ_RS00650 at 127.155 kb on - strand, within MMJJ_RS00650 at 127.155 kb on - strand, within MMJJ_RS00650 at 127.156 kb on + strand, within MMJJ_RS00650 at 127.169 kb on + strand, within MMJJ_RS00650 at 127.215 kb on + strand, within MMJJ_RS00650 at 127.215 kb on + strand, within MMJJ_RS00650 at 127.247 kb on - strand, within MMJJ_RS00650 at 127.248 kb on + strand, within MMJJ_RS00650 at 127.248 kb on + strand, within MMJJ_RS00650 at 127.248 kb on + strand, within MMJJ_RS00650 at 127.248 kb on + strand, within MMJJ_RS00650 at 127.254 kb on + strand, within MMJJ_RS00650 at 127.406 kb on - strand at 127.433 kb on - strand at 127.434 kb on + strand at 127.459 kb on - strand at 127.478 kb on + strand at 127.533 kb on - strand at 127.534 kb on + strand at 127.534 kb on + strand at 127.534 kb on + strand at 127.594 kb on - strand, within MMJJ_RS00655 at 127.681 kb on - strand, within MMJJ_RS00655 at 127.789 kb on - strand, within MMJJ_RS00655 at 127.789 kb on - strand, within MMJJ_RS00655 at 127.789 kb on - strand, within MMJJ_RS00655 at 127.802 kb on + strand, within MMJJ_RS00655 at 127.860 kb on - strand, within MMJJ_RS00655 at 127.860 kb on - strand, within MMJJ_RS00655 at 127.861 kb on + strand, within MMJJ_RS00655 at 127.864 kb on - strand, within MMJJ_RS00655 at 127.864 kb on - strand, within MMJJ_RS00655 at 127.864 kb on - strand, within MMJJ_RS00655 at 127.896 kb on - strand, within MMJJ_RS00655 at 127.896 kb on - strand, within MMJJ_RS00655 at 127.900 kb on - strand, within MMJJ_RS00655 at 127.900 kb on - strand, within MMJJ_RS00655 at 127.900 kb on - strand, within MMJJ_RS00655 at 127.901 kb on + strand, within MMJJ_RS00655 at 127.914 kb on - strand, within MMJJ_RS00655 at 127.915 kb on + strand, within MMJJ_RS00655 at 127.955 kb on - strand at 128.001 kb on - strand at 128.008 kb on + strand at 128.011 kb on + strand at 128.012 kb on - strand at 128.012 kb on - strand at 128.012 kb on - strand at 128.012 kb on - strand at 128.013 kb on + strand at 128.018 kb on + strand at 128.032 kb on - strand at 128.032 kb on - strand at 128.037 kb on + strand at 128.069 kb on + strand at 128.070 kb on - strand at 128.070 kb on - strand at 128.070 kb on - strand at 128.070 kb on - strand at 128.070 kb on - strand at 128.071 kb on + strand at 128.071 kb on + strand at 128.071 kb on + strand at 128.071 kb on + strand at 128.120 kb on + strand at 128.135 kb on - strand at 128.136 kb on + strand at 128.184 kb on - strand at 128.191 kb on + strand at 128.213 kb on - strand at 128.217 kb on - strand, within MMJJ_RS00660 at 128.217 kb on - strand, within MMJJ_RS00660 at 128.218 kb on + strand, within MMJJ_RS00660 at 128.253 kb on + strand, within MMJJ_RS00660 at 128.259 kb on - strand, within MMJJ_RS00660 at 128.277 kb on + strand, within MMJJ_RS00660 at 128.317 kb on - strand, within MMJJ_RS00660 at 128.317 kb on - strand, within MMJJ_RS00660 at 128.319 kb on - strand, within MMJJ_RS00660 at 128.319 kb on - strand, within MMJJ_RS00660 at 128.319 kb on - strand, within MMJJ_RS00660 at 128.320 kb on + strand, within MMJJ_RS00660 at 128.321 kb on - strand, within MMJJ_RS00660 at 128.321 kb on - strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.323 kb on - strand, within MMJJ_RS00660 at 128.324 kb on + strand, within MMJJ_RS00660 at 128.324 kb on + strand, within MMJJ_RS00660 at 128.324 kb on + strand, within MMJJ_RS00660 at 128.326 kb on - strand, within MMJJ_RS00660 at 128.327 kb on + strand, within MMJJ_RS00660 at 128.331 kb on + strand, within MMJJ_RS00660 at 128.394 kb on - strand, within MMJJ_RS00660 at 128.395 kb on + strand, within MMJJ_RS00660 at 128.395 kb on + strand, within MMJJ_RS00660 at 128.400 kb on - strand, within MMJJ_RS00660 at 128.442 kb on - strand, within MMJJ_RS00660 at 128.452 kb on - strand, within MMJJ_RS00660 at 128.454 kb on - strand, within MMJJ_RS00660 at 128.459 kb on - strand, within MMJJ_RS00660 at 128.486 kb on + strand, within MMJJ_RS00660 at 128.488 kb on - strand, within MMJJ_RS00660 at 128.489 kb on + strand, within MMJJ_RS00660 at 128.490 kb on - strand, within MMJJ_RS00660 at 128.492 kb on - strand, within MMJJ_RS00660 at 128.493 kb on + strand, within MMJJ_RS00660
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sulfate 125 mM remove 125,408 - MMJJ_RS00645 0.38 -0.9 125,409 + MMJJ_RS00645 0.38 -1.1 125,444 + MMJJ_RS00645 0.40 +0.1 125,451 - MMJJ_RS00645 0.41 -0.4 125,598 - MMJJ_RS00645 0.51 -1.4 125,598 - MMJJ_RS00645 0.51 -2.0 125,599 + MMJJ_RS00645 0.51 -1.6 125,614 + MMJJ_RS00645 0.52 -1.6 125,659 + MMJJ_RS00645 0.56 -2.1 125,661 - MMJJ_RS00645 0.56 -0.3 125,662 + MMJJ_RS00645 0.56 -3.3 125,662 + MMJJ_RS00645 0.56 -0.5 125,663 - MMJJ_RS00645 0.56 -3.2 125,667 + MMJJ_RS00645 0.56 +2.3 125,667 + MMJJ_RS00645 0.56 -2.1 125,669 - MMJJ_RS00645 0.56 +1.4 125,670 + MMJJ_RS00645 0.56 +0.6 125,670 + MMJJ_RS00645 0.56 +0.5 125,670 + MMJJ_RS00645 0.56 -0.9 125,714 + MMJJ_RS00645 0.59 -0.2 125,733 + MMJJ_RS00645 0.61 -1.3 125,804 - MMJJ_RS00645 0.66 +0.8 125,805 + MMJJ_RS00645 0.66 -1.6 125,826 + MMJJ_RS00645 0.67 -0.1 125,860 + MMJJ_RS00645 0.70 +0.5 125,860 + MMJJ_RS00645 0.70 -2.1 125,884 - MMJJ_RS00645 0.72 -4.0 125,885 + MMJJ_RS00645 0.72 -1.9 125,901 + MMJJ_RS00645 0.73 -2.5 125,903 - MMJJ_RS00645 0.73 -0.7 125,903 - MMJJ_RS00645 0.73 -1.5 125,904 + MMJJ_RS00645 0.73 +1.4 125,963 - MMJJ_RS00645 0.77 -0.4 125,981 - MMJJ_RS00645 0.78 -1.7 126,046 - MMJJ_RS00645 0.83 -1.1 126,076 + MMJJ_RS00645 0.85 +2.3 126,197 - -2.8 126,281 + -3.3 126,281 + -0.6 126,331 - -1.6 126,332 + -2.5 126,332 + -3.7 126,333 - -2.5 126,337 + -1.6 126,353 - -0.3 126,370 - -0.2 126,370 - -1.3 126,370 - +3.3 126,370 - +1.2 126,371 + -2.4 126,386 + +1.1 126,393 + +1.7 126,524 + MMJJ_RS00650 0.16 -0.1 126,542 - MMJJ_RS00650 0.18 +0.3 126,574 - MMJJ_RS00650 0.20 +1.5 126,587 - MMJJ_RS00650 0.22 +0.5 126,588 + MMJJ_RS00650 0.22 -4.1 126,593 - MMJJ_RS00650 0.22 -2.8 126,594 + MMJJ_RS00650 0.22 -1.7 126,615 + MMJJ_RS00650 0.24 -3.9 126,641 - MMJJ_RS00650 0.26 -2.1 126,663 - MMJJ_RS00650 0.28 +3.3 126,663 - MMJJ_RS00650 0.28 -2.2 126,663 - MMJJ_RS00650 0.28 +1.6 126,663 - MMJJ_RS00650 0.28 +1.9 126,663 - MMJJ_RS00650 0.28 +2.5 126,684 + MMJJ_RS00650 0.30 +4.7 126,835 - MMJJ_RS00650 0.43 -3.2 126,836 + MMJJ_RS00650 0.43 +1.6 127,002 + MMJJ_RS00650 0.57 -0.9 127,115 - MMJJ_RS00650 0.67 +1.6 127,130 + MMJJ_RS00650 0.68 +1.3 127,141 - MMJJ_RS00650 0.69 -2.7 127,155 - MMJJ_RS00650 0.70 +0.5 127,155 - MMJJ_RS00650 0.70 -0.9 127,156 + MMJJ_RS00650 0.70 +2.3 127,169 + MMJJ_RS00650 0.71 +1.9 127,215 + MMJJ_RS00650 0.75 -0.7 127,215 + MMJJ_RS00650 0.75 -2.5 127,247 - MMJJ_RS00650 0.78 +1.8 127,248 + MMJJ_RS00650 0.78 -1.1 127,248 + MMJJ_RS00650 0.78 -1.0 127,248 + MMJJ_RS00650 0.78 -3.0 127,248 + MMJJ_RS00650 0.78 +0.7 127,254 + MMJJ_RS00650 0.79 -1.2 127,406 - -1.9 127,433 - +0.9 127,434 + -1.4 127,459 - +0.2 127,478 + +0.2 127,533 - +2.4 127,534 + -1.7 127,534 + +0.8 127,534 + -2.2 127,594 - MMJJ_RS00655 0.18 +1.7 127,681 - MMJJ_RS00655 0.36 -1.3 127,789 - MMJJ_RS00655 0.58 +1.7 127,789 - MMJJ_RS00655 0.58 +1.5 127,789 - MMJJ_RS00655 0.58 -2.8 127,802 + MMJJ_RS00655 0.61 +2.2 127,860 - MMJJ_RS00655 0.73 -1.1 127,860 - MMJJ_RS00655 0.73 +2.1 127,861 + MMJJ_RS00655 0.74 +0.4 127,864 - MMJJ_RS00655 0.74 +1.9 127,864 - MMJJ_RS00655 0.74 +1.7 127,864 - MMJJ_RS00655 0.74 -2.1 127,896 - MMJJ_RS00655 0.81 +2.7 127,896 - MMJJ_RS00655 0.81 -1.0 127,900 - MMJJ_RS00655 0.82 +0.6 127,900 - MMJJ_RS00655 0.82 +1.1 127,900 - MMJJ_RS00655 0.82 -3.1 127,901 + MMJJ_RS00655 0.82 -1.7 127,914 - MMJJ_RS00655 0.85 +0.8 127,915 + MMJJ_RS00655 0.85 -3.2 127,955 - -3.3 128,001 - +5.9 128,008 + -1.3 128,011 + +1.3 128,012 - +0.9 128,012 - -1.1 128,012 - +1.5 128,012 - -2.7 128,013 + +1.5 128,018 + +1.2 128,032 - +1.3 128,032 - +1.6 128,037 + -2.3 128,069 + -0.5 128,070 - +2.0 128,070 - +1.3 128,070 - -0.1 128,070 - +2.0 128,070 - -1.1 128,071 + +0.8 128,071 + -2.0 128,071 + -0.1 128,071 + +0.2 128,120 + +0.1 128,135 - +6.7 128,136 + +2.1 128,184 - -0.1 128,191 + -1.9 128,213 - -1.9 128,217 - MMJJ_RS00660 0.10 -0.4 128,217 - MMJJ_RS00660 0.10 -0.7 128,218 + MMJJ_RS00660 0.10 -0.6 128,253 + MMJJ_RS00660 0.14 +3.4 128,259 - MMJJ_RS00660 0.15 +1.3 128,277 + MMJJ_RS00660 0.17 -1.3 128,317 - MMJJ_RS00660 0.22 -2.7 128,317 - MMJJ_RS00660 0.22 -1.7 128,319 - MMJJ_RS00660 0.22 -4.2 128,319 - MMJJ_RS00660 0.22 -3.7 128,319 - MMJJ_RS00660 0.22 +1.0 128,320 + MMJJ_RS00660 0.23 -0.4 128,321 - MMJJ_RS00660 0.23 -2.4 128,321 - MMJJ_RS00660 0.23 +0.7 128,322 + MMJJ_RS00660 0.23 -0.4 128,322 + MMJJ_RS00660 0.23 +0.3 128,322 + MMJJ_RS00660 0.23 +1.2 128,322 + MMJJ_RS00660 0.23 -2.2 128,322 + MMJJ_RS00660 0.23 +2.8 128,323 - MMJJ_RS00660 0.23 -1.2 128,324 + MMJJ_RS00660 0.23 -3.2 128,324 + MMJJ_RS00660 0.23 -0.8 128,324 + MMJJ_RS00660 0.23 +1.4 128,326 - MMJJ_RS00660 0.23 -1.4 128,327 + MMJJ_RS00660 0.23 -3.3 128,331 + MMJJ_RS00660 0.24 -2.2 128,394 - MMJJ_RS00660 0.32 -1.3 128,395 + MMJJ_RS00660 0.32 +0.1 128,395 + MMJJ_RS00660 0.32 -1.4 128,400 - MMJJ_RS00660 0.32 -1.4 128,442 - MMJJ_RS00660 0.37 -2.1 128,452 - MMJJ_RS00660 0.39 -1.0 128,454 - MMJJ_RS00660 0.39 +3.2 128,459 - MMJJ_RS00660 0.39 -1.8 128,486 + MMJJ_RS00660 0.43 -2.4 128,488 - MMJJ_RS00660 0.43 +1.5 128,489 + MMJJ_RS00660 0.43 +0.2 128,490 - MMJJ_RS00660 0.43 +1.8 128,492 - MMJJ_RS00660 0.43 +0.5 128,493 + MMJJ_RS00660 0.44 -1.6
Or see this region's nucleotide sequence