Experiment: McCas_formate_complete silver chloride 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03435 and MMJJ_RS03440 are separated by 94 nucleotides MMJJ_RS03440 and MMJJ_RS03445 are separated by 745 nucleotides
MMJJ_RS03435: MMJJ_RS03435 - hypothetical protein, at 644,187 to 645,512
_RS03435
MMJJ_RS03440: MMJJ_RS03440 - hypothetical protein, at 645,607 to 645,873
_RS03440
MMJJ_RS03445: MMJJ_RS03445 - hypothetical protein, at 646,619 to 647,167
_RS03445
Position (kb) 645
646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 644.625 kb on + strand, within MMJJ_RS03435 at 644.643 kb on + strand, within MMJJ_RS03435 at 644.645 kb on + strand, within MMJJ_RS03435 at 644.690 kb on + strand, within MMJJ_RS03435 at 644.707 kb on - strand, within MMJJ_RS03435 at 644.708 kb on + strand, within MMJJ_RS03435 at 644.750 kb on - strand, within MMJJ_RS03435 at 644.750 kb on - strand, within MMJJ_RS03435 at 644.754 kb on + strand, within MMJJ_RS03435 at 644.754 kb on + strand, within MMJJ_RS03435 at 644.779 kb on - strand, within MMJJ_RS03435 at 644.823 kb on - strand, within MMJJ_RS03435 at 644.824 kb on + strand, within MMJJ_RS03435 at 644.824 kb on + strand, within MMJJ_RS03435 at 644.828 kb on - strand, within MMJJ_RS03435 at 644.858 kb on - strand, within MMJJ_RS03435 at 644.858 kb on - strand, within MMJJ_RS03435 at 644.905 kb on - strand, within MMJJ_RS03435 at 644.915 kb on + strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.979 kb on + strand, within MMJJ_RS03435 at 644.981 kb on - strand, within MMJJ_RS03435 at 644.982 kb on + strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 645.013 kb on - strand, within MMJJ_RS03435 at 645.033 kb on - strand, within MMJJ_RS03435 at 645.053 kb on - strand, within MMJJ_RS03435 at 645.068 kb on + strand, within MMJJ_RS03435 at 645.087 kb on - strand, within MMJJ_RS03435 at 645.087 kb on - strand, within MMJJ_RS03435 at 645.087 kb on - strand, within MMJJ_RS03435 at 645.088 kb on + strand, within MMJJ_RS03435 at 645.137 kb on + strand, within MMJJ_RS03435 at 645.176 kb on + strand, within MMJJ_RS03435 at 645.176 kb on + strand, within MMJJ_RS03435 at 645.215 kb on + strand, within MMJJ_RS03435 at 645.215 kb on + strand, within MMJJ_RS03435 at 645.235 kb on - strand, within MMJJ_RS03435 at 645.235 kb on - strand, within MMJJ_RS03435 at 645.236 kb on + strand, within MMJJ_RS03435 at 645.236 kb on + strand, within MMJJ_RS03435 at 645.269 kb on - strand, within MMJJ_RS03435 at 645.269 kb on - strand, within MMJJ_RS03435 at 645.270 kb on + strand, within MMJJ_RS03435 at 645.299 kb on - strand, within MMJJ_RS03435 at 645.299 kb on - strand, within MMJJ_RS03435 at 645.300 kb on + strand, within MMJJ_RS03435 at 645.300 kb on + strand, within MMJJ_RS03435 at 645.325 kb on - strand, within MMJJ_RS03435 at 645.371 kb on + strand, within MMJJ_RS03435 at 645.394 kb on - strand at 645.394 kb on - strand at 645.431 kb on - strand at 645.432 kb on + strand at 645.475 kb on - strand at 645.482 kb on - strand at 645.483 kb on + strand at 645.552 kb on - strand at 645.596 kb on + strand at 645.609 kb on + strand at 645.616 kb on - strand at 645.627 kb on - strand at 645.645 kb on + strand, within MMJJ_RS03440 at 645.646 kb on + strand, within MMJJ_RS03440 at 645.646 kb on + strand, within MMJJ_RS03440 at 645.648 kb on - strand, within MMJJ_RS03440 at 645.661 kb on + strand, within MMJJ_RS03440 at 645.730 kb on - strand, within MMJJ_RS03440 at 645.730 kb on - strand, within MMJJ_RS03440 at 645.730 kb on - strand, within MMJJ_RS03440 at 645.731 kb on + strand, within MMJJ_RS03440 at 645.731 kb on + strand, within MMJJ_RS03440 at 645.731 kb on + strand, within MMJJ_RS03440 at 645.732 kb on - strand, within MMJJ_RS03440 at 645.733 kb on + strand, within MMJJ_RS03440 at 645.733 kb on + strand, within MMJJ_RS03440 at 645.772 kb on + strand, within MMJJ_RS03440 at 645.791 kb on + strand, within MMJJ_RS03440 at 645.834 kb on + strand, within MMJJ_RS03440 at 645.834 kb on + strand, within MMJJ_RS03440 at 645.834 kb on + strand, within MMJJ_RS03440 at 645.837 kb on - strand, within MMJJ_RS03440 at 645.837 kb on - strand, within MMJJ_RS03440 at 645.838 kb on + strand, within MMJJ_RS03440 at 645.838 kb on + strand, within MMJJ_RS03440 at 645.838 kb on + strand, within MMJJ_RS03440 at 645.890 kb on - strand at 645.900 kb on - strand at 645.906 kb on + strand at 645.906 kb on + strand at 645.963 kb on - strand at 645.967 kb on - strand at 645.991 kb on - strand at 646.017 kb on + strand at 646.058 kb on + strand at 646.087 kb on + strand at 646.091 kb on - strand at 646.091 kb on - strand at 646.092 kb on + strand at 646.092 kb on + strand at 646.093 kb on - strand at 646.118 kb on + strand at 646.142 kb on - strand at 646.160 kb on - strand at 646.182 kb on - strand at 646.182 kb on - strand at 646.236 kb on + strand at 646.238 kb on - strand at 646.254 kb on + strand at 646.255 kb on - strand at 646.255 kb on - strand at 646.255 kb on - strand at 646.255 kb on - strand at 646.255 kb on - strand at 646.256 kb on + strand at 646.256 kb on + strand at 646.256 kb on + strand at 646.256 kb on + strand at 646.274 kb on + strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.276 kb on + strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.278 kb on + strand at 646.278 kb on + strand at 646.278 kb on + strand at 646.279 kb on - strand at 646.279 kb on - strand at 646.280 kb on + strand at 646.283 kb on + strand at 646.351 kb on - strand at 646.352 kb on + strand at 646.378 kb on + strand at 646.390 kb on + strand at 646.393 kb on - strand at 646.397 kb on - strand at 646.397 kb on - strand at 646.406 kb on + strand at 646.462 kb on - strand at 646.537 kb on - strand at 646.550 kb on - strand at 646.550 kb on - strand at 646.551 kb on + strand at 646.551 kb on + strand at 646.562 kb on - strand at 646.563 kb on + strand at 646.564 kb on - strand at 646.564 kb on - strand at 646.566 kb on - strand at 646.566 kb on - strand at 646.567 kb on + strand at 646.567 kb on + strand at 646.567 kb on + strand at 646.567 kb on + strand at 646.569 kb on + strand at 646.569 kb on + strand at 646.616 kb on - strand at 646.616 kb on - strand at 646.616 kb on - strand at 646.617 kb on + strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.654 kb on - strand at 646.666 kb on - strand at 646.667 kb on + strand at 646.667 kb on + strand at 646.670 kb on + strand at 646.758 kb on - strand, within MMJJ_RS03445 at 646.759 kb on + strand, within MMJJ_RS03445 at 646.797 kb on - strand, within MMJJ_RS03445 at 646.798 kb on + strand, within MMJJ_RS03445 at 646.798 kb on + strand, within MMJJ_RS03445 at 646.814 kb on + strand, within MMJJ_RS03445 at 646.814 kb on + strand, within MMJJ_RS03445
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete silver chloride 0.125 mM remove 644,625 + MMJJ_RS03435 0.33 -0.7 644,643 + MMJJ_RS03435 0.34 -1.1 644,645 + MMJJ_RS03435 0.35 +0.9 644,690 + MMJJ_RS03435 0.38 -0.6 644,707 - MMJJ_RS03435 0.39 +0.3 644,708 + MMJJ_RS03435 0.39 +1.0 644,750 - MMJJ_RS03435 0.42 +1.0 644,750 - MMJJ_RS03435 0.42 -4.4 644,754 + MMJJ_RS03435 0.43 +0.4 644,754 + MMJJ_RS03435 0.43 -0.1 644,779 - MMJJ_RS03435 0.45 -0.5 644,823 - MMJJ_RS03435 0.48 -1.1 644,824 + MMJJ_RS03435 0.48 -1.3 644,824 + MMJJ_RS03435 0.48 -0.2 644,828 - MMJJ_RS03435 0.48 -0.6 644,858 - MMJJ_RS03435 0.51 -1.1 644,858 - MMJJ_RS03435 0.51 -2.7 644,905 - MMJJ_RS03435 0.54 -1.1 644,915 + MMJJ_RS03435 0.55 +0.7 644,978 - MMJJ_RS03435 0.60 -1.1 644,978 - MMJJ_RS03435 0.60 -1.0 644,978 - MMJJ_RS03435 0.60 -0.1 644,979 + MMJJ_RS03435 0.60 +1.7 644,981 - MMJJ_RS03435 0.60 -0.1 644,982 + MMJJ_RS03435 0.60 -1.2 644,983 - MMJJ_RS03435 0.60 -1.3 644,983 - MMJJ_RS03435 0.60 +0.1 644,983 - MMJJ_RS03435 0.60 +1.2 644,984 + MMJJ_RS03435 0.60 -3.3 644,984 + MMJJ_RS03435 0.60 +1.8 644,984 + MMJJ_RS03435 0.60 +0.6 645,013 - MMJJ_RS03435 0.62 -1.2 645,033 - MMJJ_RS03435 0.64 +1.9 645,053 - MMJJ_RS03435 0.65 +0.8 645,068 + MMJJ_RS03435 0.66 -0.7 645,087 - MMJJ_RS03435 0.68 +0.8 645,087 - MMJJ_RS03435 0.68 +0.5 645,087 - MMJJ_RS03435 0.68 +1.8 645,088 + MMJJ_RS03435 0.68 +1.1 645,137 + MMJJ_RS03435 0.72 +1.3 645,176 + MMJJ_RS03435 0.75 +0.7 645,176 + MMJJ_RS03435 0.75 -1.7 645,215 + MMJJ_RS03435 0.78 -0.4 645,215 + MMJJ_RS03435 0.78 +0.9 645,235 - MMJJ_RS03435 0.79 +1.0 645,235 - MMJJ_RS03435 0.79 -2.7 645,236 + MMJJ_RS03435 0.79 +1.4 645,236 + MMJJ_RS03435 0.79 -0.2 645,269 - MMJJ_RS03435 0.82 -4.0 645,269 - MMJJ_RS03435 0.82 +0.2 645,270 + MMJJ_RS03435 0.82 -1.7 645,299 - MMJJ_RS03435 0.84 +0.5 645,299 - MMJJ_RS03435 0.84 -0.5 645,300 + MMJJ_RS03435 0.84 -1.1 645,300 + MMJJ_RS03435 0.84 +0.5 645,325 - MMJJ_RS03435 0.86 +0.8 645,371 + MMJJ_RS03435 0.89 +1.0 645,394 - +1.6 645,394 - -0.9 645,431 - -2.1 645,432 + +0.1 645,475 - +2.1 645,482 - -0.1 645,483 + +1.0 645,552 - +1.2 645,596 + -0.9 645,609 + -0.5 645,616 - +3.4 645,627 - -0.8 645,645 + MMJJ_RS03440 0.14 -3.5 645,646 + MMJJ_RS03440 0.15 -1.0 645,646 + MMJJ_RS03440 0.15 +1.2 645,648 - MMJJ_RS03440 0.15 -0.6 645,661 + MMJJ_RS03440 0.20 -1.1 645,730 - MMJJ_RS03440 0.46 +0.8 645,730 - MMJJ_RS03440 0.46 +0.4 645,730 - MMJJ_RS03440 0.46 +3.9 645,731 + MMJJ_RS03440 0.46 +0.9 645,731 + MMJJ_RS03440 0.46 +0.7 645,731 + MMJJ_RS03440 0.46 -0.1 645,732 - MMJJ_RS03440 0.47 +0.6 645,733 + MMJJ_RS03440 0.47 +0.2 645,733 + MMJJ_RS03440 0.47 -0.6 645,772 + MMJJ_RS03440 0.62 -0.5 645,791 + MMJJ_RS03440 0.69 +2.4 645,834 + MMJJ_RS03440 0.85 +0.9 645,834 + MMJJ_RS03440 0.85 +1.0 645,834 + MMJJ_RS03440 0.85 -0.2 645,837 - MMJJ_RS03440 0.86 +0.4 645,837 - MMJJ_RS03440 0.86 -3.6 645,838 + MMJJ_RS03440 0.87 +1.9 645,838 + MMJJ_RS03440 0.87 +1.1 645,838 + MMJJ_RS03440 0.87 +0.7 645,890 - -0.9 645,900 - +2.9 645,906 + +0.3 645,906 + -1.0 645,963 - -0.3 645,967 - -0.0 645,991 - +0.1 646,017 + -4.5 646,058 + -0.5 646,087 + -1.7 646,091 - +1.6 646,091 - +0.7 646,092 + +0.7 646,092 + -1.4 646,093 - +0.4 646,118 + +1.2 646,142 - -0.5 646,160 - +1.4 646,182 - -0.0 646,182 - +0.3 646,236 + -0.0 646,238 - +1.5 646,254 + +2.2 646,255 - +1.4 646,255 - -0.3 646,255 - -0.0 646,255 - -3.7 646,255 - +1.7 646,256 + +1.7 646,256 + +0.5 646,256 + +2.3 646,256 + -1.5 646,274 + -0.5 646,275 - -2.5 646,275 - -0.9 646,275 - +0.0 646,275 - -0.4 646,275 - -0.2 646,275 - +0.8 646,276 + -0.7 646,277 - -1.6 646,277 - +0.7 646,277 - +0.2 646,277 - -3.7 646,277 - +0.8 646,277 - +1.1 646,277 - -0.1 646,277 - -0.6 646,278 + -0.5 646,278 + -0.3 646,278 + -0.4 646,279 - -1.8 646,279 - +0.9 646,280 + -1.4 646,283 + +0.3 646,351 - -0.8 646,352 + -0.1 646,378 + +0.9 646,390 + +1.5 646,393 - -2.7 646,397 - +0.6 646,397 - -0.6 646,406 + -0.7 646,462 - -0.1 646,537 - -3.7 646,550 - +0.2 646,550 - -2.6 646,551 + -0.7 646,551 + +1.2 646,562 - +1.0 646,563 + -1.5 646,564 - -1.1 646,564 - +0.4 646,566 - -0.9 646,566 - -0.2 646,567 + -1.0 646,567 + -0.6 646,567 + -0.2 646,567 + +1.3 646,569 + -0.4 646,569 + +0.6 646,616 - -0.3 646,616 - +0.9 646,616 - -1.4 646,617 + +1.1 646,618 - +1.4 646,618 - +1.1 646,618 - -0.4 646,618 - +0.9 646,618 - +1.5 646,618 - +0.5 646,619 + -0.4 646,619 + -0.4 646,619 + -2.9 646,619 + -0.9 646,619 + -2.1 646,619 + +0.6 646,619 + -1.0 646,654 - +1.6 646,666 - +1.1 646,667 + +0.5 646,667 + -1.3 646,670 + +1.7 646,758 - MMJJ_RS03445 0.25 +0.1 646,759 + MMJJ_RS03445 0.26 +1.2 646,797 - MMJJ_RS03445 0.32 -0.2 646,798 + MMJJ_RS03445 0.33 -1.4 646,798 + MMJJ_RS03445 0.33 +0.0 646,814 + MMJJ_RS03445 0.36 +1.3 646,814 + MMJJ_RS03445 0.36 +0.8
Or see this region's nucleotide sequence