Experiment: McCas_formate_complete silver chloride 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00290 and MMJJ_RS00295 are separated by 84 nucleotides MMJJ_RS00295 and MMJJ_RS00300 are separated by 15 nucleotides MMJJ_RS00300 and MMJJ_RS00305 are separated by 20 nucleotides
MMJJ_RS00290: MMJJ_RS00290 - CheF family chemotaxis protein, at 55,709 to 56,755
_RS00290
MMJJ_RS00295: MMJJ_RS00295 - response regulator, at 56,840 to 57,211
_RS00295
MMJJ_RS00300: MMJJ_RS00300 - chemotaxis protein CheC, at 57,227 to 57,916
_RS00300
MMJJ_RS00305: MMJJ_RS00305 - chemotaxis protein CheC, at 57,937 to 58,545
_RS00305
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 55.994 kb on + strand, within MMJJ_RS00290 at 55.998 kb on - strand, within MMJJ_RS00290 at 55.998 kb on - strand, within MMJJ_RS00290 at 55.999 kb on + strand, within MMJJ_RS00290 at 55.999 kb on + strand, within MMJJ_RS00290 at 56.025 kb on + strand, within MMJJ_RS00290 at 56.025 kb on + strand, within MMJJ_RS00290 at 56.040 kb on - strand, within MMJJ_RS00290 at 56.062 kb on + strand, within MMJJ_RS00290 at 56.097 kb on - strand, within MMJJ_RS00290 at 56.097 kb on - strand, within MMJJ_RS00290 at 56.098 kb on + strand, within MMJJ_RS00290 at 56.102 kb on - strand, within MMJJ_RS00290 at 56.102 kb on - strand, within MMJJ_RS00290 at 56.103 kb on + strand, within MMJJ_RS00290 at 56.103 kb on + strand, within MMJJ_RS00290 at 56.132 kb on + strand, within MMJJ_RS00290 at 56.242 kb on - strand, within MMJJ_RS00290 at 56.242 kb on - strand, within MMJJ_RS00290 at 56.256 kb on + strand, within MMJJ_RS00290 at 56.262 kb on - strand, within MMJJ_RS00290 at 56.267 kb on + strand, within MMJJ_RS00290 at 56.272 kb on - strand, within MMJJ_RS00290 at 56.272 kb on - strand, within MMJJ_RS00290 at 56.273 kb on + strand, within MMJJ_RS00290 at 56.371 kb on - strand, within MMJJ_RS00290 at 56.372 kb on + strand, within MMJJ_RS00290 at 56.397 kb on - strand, within MMJJ_RS00290 at 56.397 kb on - strand, within MMJJ_RS00290 at 56.397 kb on - strand, within MMJJ_RS00290 at 56.398 kb on + strand, within MMJJ_RS00290 at 56.398 kb on + strand, within MMJJ_RS00290 at 56.398 kb on + strand, within MMJJ_RS00290 at 56.406 kb on - strand, within MMJJ_RS00290 at 56.411 kb on - strand, within MMJJ_RS00290 at 56.412 kb on + strand, within MMJJ_RS00290 at 56.455 kb on + strand, within MMJJ_RS00290 at 56.574 kb on - strand, within MMJJ_RS00290 at 56.576 kb on - strand, within MMJJ_RS00290 at 56.577 kb on + strand, within MMJJ_RS00290 at 56.579 kb on + strand, within MMJJ_RS00290 at 56.579 kb on + strand, within MMJJ_RS00290 at 56.579 kb on + strand, within MMJJ_RS00290 at 56.609 kb on + strand, within MMJJ_RS00290 at 56.684 kb on + strand at 56.684 kb on + strand at 56.684 kb on + strand at 56.684 kb on + strand at 56.689 kb on - strand at 56.729 kb on + strand at 56.740 kb on - strand at 56.743 kb on - strand at 56.753 kb on - strand at 56.765 kb on - strand at 56.766 kb on + strand at 56.769 kb on - strand at 56.769 kb on - strand at 56.769 kb on - strand at 56.769 kb on - strand at 56.770 kb on + strand at 56.770 kb on + strand at 56.770 kb on + strand at 56.786 kb on - strand at 56.786 kb on - strand at 56.787 kb on + strand at 56.789 kb on - strand at 56.789 kb on - strand at 56.790 kb on + strand at 56.804 kb on + strand at 56.810 kb on + strand at 56.826 kb on + strand at 56.826 kb on + strand at 56.835 kb on - strand at 56.835 kb on - strand at 56.838 kb on - strand at 56.848 kb on - strand at 56.848 kb on - strand at 56.854 kb on + strand at 56.868 kb on - strand at 56.924 kb on + strand, within MMJJ_RS00295 at 56.927 kb on - strand, within MMJJ_RS00295 at 57.015 kb on - strand, within MMJJ_RS00295 at 57.015 kb on - strand, within MMJJ_RS00295 at 57.081 kb on - strand, within MMJJ_RS00295 at 57.081 kb on - strand, within MMJJ_RS00295 at 57.081 kb on - strand, within MMJJ_RS00295 at 57.082 kb on + strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.085 kb on + strand, within MMJJ_RS00295 at 57.092 kb on + strand, within MMJJ_RS00295 at 57.092 kb on + strand, within MMJJ_RS00295 at 57.092 kb on + strand, within MMJJ_RS00295 at 57.099 kb on - strand, within MMJJ_RS00295 at 57.130 kb on + strand, within MMJJ_RS00295 at 57.130 kb on + strand, within MMJJ_RS00295 at 57.149 kb on - strand, within MMJJ_RS00295 at 57.149 kb on - strand, within MMJJ_RS00295 at 57.149 kb on - strand, within MMJJ_RS00295 at 57.150 kb on + strand, within MMJJ_RS00295 at 57.150 kb on + strand, within MMJJ_RS00295 at 57.151 kb on - strand, within MMJJ_RS00295 at 57.152 kb on + strand, within MMJJ_RS00295 at 57.152 kb on + strand, within MMJJ_RS00295 at 57.156 kb on - strand, within MMJJ_RS00295 at 57.156 kb on - strand, within MMJJ_RS00295 at 57.156 kb on - strand, within MMJJ_RS00295 at 57.156 kb on - strand, within MMJJ_RS00295 at 57.157 kb on + strand, within MMJJ_RS00295 at 57.223 kb on - strand at 57.224 kb on + strand at 57.314 kb on + strand, within MMJJ_RS00300 at 57.334 kb on + strand, within MMJJ_RS00300 at 57.352 kb on + strand, within MMJJ_RS00300 at 57.432 kb on - strand, within MMJJ_RS00300 at 57.469 kb on + strand, within MMJJ_RS00300 at 57.472 kb on - strand, within MMJJ_RS00300 at 57.473 kb on + strand, within MMJJ_RS00300 at 57.501 kb on - strand, within MMJJ_RS00300 at 57.537 kb on - strand, within MMJJ_RS00300 at 57.611 kb on + strand, within MMJJ_RS00300 at 57.686 kb on + strand, within MMJJ_RS00300 at 57.706 kb on - strand, within MMJJ_RS00300 at 57.707 kb on + strand, within MMJJ_RS00300 at 57.707 kb on + strand, within MMJJ_RS00300 at 57.715 kb on - strand, within MMJJ_RS00300 at 57.760 kb on + strand, within MMJJ_RS00300 at 57.760 kb on + strand, within MMJJ_RS00300 at 57.760 kb on + strand, within MMJJ_RS00300 at 57.762 kb on - strand, within MMJJ_RS00300 at 57.767 kb on - strand, within MMJJ_RS00300 at 57.767 kb on - strand, within MMJJ_RS00300 at 57.796 kb on - strand, within MMJJ_RS00300 at 57.796 kb on - strand, within MMJJ_RS00300 at 57.797 kb on + strand, within MMJJ_RS00300 at 57.797 kb on + strand, within MMJJ_RS00300 at 57.811 kb on - strand, within MMJJ_RS00300 at 57.812 kb on + strand, within MMJJ_RS00300 at 57.843 kb on - strand, within MMJJ_RS00300 at 57.844 kb on + strand, within MMJJ_RS00300 at 57.857 kb on + strand at 57.861 kb on - strand at 57.862 kb on + strand at 57.866 kb on + strand at 57.866 kb on + strand at 57.871 kb on + strand at 57.886 kb on - strand at 57.910 kb on + strand at 57.910 kb on + strand at 57.934 kb on + strand at 57.956 kb on - strand at 57.961 kb on + strand at 57.961 kb on + strand at 58.020 kb on - strand, within MMJJ_RS00305 at 58.020 kb on - strand, within MMJJ_RS00305 at 58.020 kb on - strand, within MMJJ_RS00305 at 58.039 kb on + strand, within MMJJ_RS00305 at 58.048 kb on + strand, within MMJJ_RS00305 at 58.056 kb on - strand, within MMJJ_RS00305 at 58.075 kb on - strand, within MMJJ_RS00305 at 58.159 kb on + strand, within MMJJ_RS00305 at 58.163 kb on - strand, within MMJJ_RS00305
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete silver chloride 0.125 mM remove 55,994 + MMJJ_RS00290 0.27 -0.5 55,998 - MMJJ_RS00290 0.28 -1.4 55,998 - MMJJ_RS00290 0.28 -0.9 55,999 + MMJJ_RS00290 0.28 -0.2 55,999 + MMJJ_RS00290 0.28 +1.2 56,025 + MMJJ_RS00290 0.30 +3.1 56,025 + MMJJ_RS00290 0.30 -0.6 56,040 - MMJJ_RS00290 0.32 +2.3 56,062 + MMJJ_RS00290 0.34 -1.1 56,097 - MMJJ_RS00290 0.37 -0.6 56,097 - MMJJ_RS00290 0.37 +0.3 56,098 + MMJJ_RS00290 0.37 -1.6 56,102 - MMJJ_RS00290 0.38 +1.2 56,102 - MMJJ_RS00290 0.38 +2.1 56,103 + MMJJ_RS00290 0.38 -0.7 56,103 + MMJJ_RS00290 0.38 -2.5 56,132 + MMJJ_RS00290 0.40 -0.7 56,242 - MMJJ_RS00290 0.51 -1.2 56,242 - MMJJ_RS00290 0.51 +1.1 56,256 + MMJJ_RS00290 0.52 -0.1 56,262 - MMJJ_RS00290 0.53 +0.8 56,267 + MMJJ_RS00290 0.53 +0.7 56,272 - MMJJ_RS00290 0.54 -0.1 56,272 - MMJJ_RS00290 0.54 +0.6 56,273 + MMJJ_RS00290 0.54 +2.3 56,371 - MMJJ_RS00290 0.63 -1.8 56,372 + MMJJ_RS00290 0.63 +1.6 56,397 - MMJJ_RS00290 0.66 -1.0 56,397 - MMJJ_RS00290 0.66 -2.2 56,397 - MMJJ_RS00290 0.66 -0.5 56,398 + MMJJ_RS00290 0.66 +1.6 56,398 + MMJJ_RS00290 0.66 +1.1 56,398 + MMJJ_RS00290 0.66 -0.2 56,406 - MMJJ_RS00290 0.67 +0.1 56,411 - MMJJ_RS00290 0.67 -1.2 56,412 + MMJJ_RS00290 0.67 -0.6 56,455 + MMJJ_RS00290 0.71 +1.4 56,574 - MMJJ_RS00290 0.83 -4.0 56,576 - MMJJ_RS00290 0.83 -3.2 56,577 + MMJJ_RS00290 0.83 -0.8 56,579 + MMJJ_RS00290 0.83 +0.3 56,579 + MMJJ_RS00290 0.83 -0.7 56,579 + MMJJ_RS00290 0.83 -2.9 56,609 + MMJJ_RS00290 0.86 -0.9 56,684 + -1.7 56,684 + +1.2 56,684 + +0.2 56,684 + -0.5 56,689 - -0.8 56,729 + +0.4 56,740 - -0.1 56,743 - -1.4 56,753 - -0.4 56,765 - -1.9 56,766 + -0.4 56,769 - -2.5 56,769 - -2.6 56,769 - +2.2 56,769 - -2.9 56,770 + +0.2 56,770 + +0.1 56,770 + +1.2 56,786 - -0.1 56,786 - +2.6 56,787 + +0.9 56,789 - -0.3 56,789 - -0.4 56,790 + -0.3 56,804 + -4.5 56,810 + -0.8 56,826 + -0.0 56,826 + -2.3 56,835 - +2.9 56,835 - -0.6 56,838 - +3.2 56,848 - +1.1 56,848 - -3.1 56,854 + +0.8 56,868 - +0.8 56,924 + MMJJ_RS00295 0.23 -3.8 56,927 - MMJJ_RS00295 0.23 +0.8 57,015 - MMJJ_RS00295 0.47 +1.9 57,015 - MMJJ_RS00295 0.47 +1.3 57,081 - MMJJ_RS00295 0.65 -0.3 57,081 - MMJJ_RS00295 0.65 -0.5 57,081 - MMJJ_RS00295 0.65 +0.5 57,082 + MMJJ_RS00295 0.65 +1.4 57,084 - MMJJ_RS00295 0.66 +3.4 57,084 - MMJJ_RS00295 0.66 -3.8 57,084 - MMJJ_RS00295 0.66 +0.7 57,084 - MMJJ_RS00295 0.66 -3.6 57,084 - MMJJ_RS00295 0.66 +0.0 57,084 - MMJJ_RS00295 0.66 -0.3 57,084 - MMJJ_RS00295 0.66 -1.1 57,085 + MMJJ_RS00295 0.66 -0.5 57,092 + MMJJ_RS00295 0.68 -0.0 57,092 + MMJJ_RS00295 0.68 +1.8 57,092 + MMJJ_RS00295 0.68 -0.6 57,099 - MMJJ_RS00295 0.70 -1.4 57,130 + MMJJ_RS00295 0.78 +2.6 57,130 + MMJJ_RS00295 0.78 +1.1 57,149 - MMJJ_RS00295 0.83 +0.6 57,149 - MMJJ_RS00295 0.83 +0.5 57,149 - MMJJ_RS00295 0.83 +0.6 57,150 + MMJJ_RS00295 0.83 +1.1 57,150 + MMJJ_RS00295 0.83 +1.1 57,151 - MMJJ_RS00295 0.84 +2.2 57,152 + MMJJ_RS00295 0.84 -0.7 57,152 + MMJJ_RS00295 0.84 +1.4 57,156 - MMJJ_RS00295 0.85 +1.5 57,156 - MMJJ_RS00295 0.85 -1.6 57,156 - MMJJ_RS00295 0.85 +0.8 57,156 - MMJJ_RS00295 0.85 +0.9 57,157 + MMJJ_RS00295 0.85 -0.1 57,223 - -0.9 57,224 + +2.4 57,314 + MMJJ_RS00300 0.13 -1.7 57,334 + MMJJ_RS00300 0.16 -0.1 57,352 + MMJJ_RS00300 0.18 +0.2 57,432 - MMJJ_RS00300 0.30 +3.5 57,469 + MMJJ_RS00300 0.35 +0.9 57,472 - MMJJ_RS00300 0.36 -0.6 57,473 + MMJJ_RS00300 0.36 -0.7 57,501 - MMJJ_RS00300 0.40 +1.6 57,537 - MMJJ_RS00300 0.45 +2.9 57,611 + MMJJ_RS00300 0.56 +0.2 57,686 + MMJJ_RS00300 0.67 -2.2 57,706 - MMJJ_RS00300 0.69 +2.2 57,707 + MMJJ_RS00300 0.70 -0.1 57,707 + MMJJ_RS00300 0.70 -3.8 57,715 - MMJJ_RS00300 0.71 +1.8 57,760 + MMJJ_RS00300 0.77 +2.6 57,760 + MMJJ_RS00300 0.77 +3.1 57,760 + MMJJ_RS00300 0.77 +2.1 57,762 - MMJJ_RS00300 0.78 +1.4 57,767 - MMJJ_RS00300 0.78 +0.1 57,767 - MMJJ_RS00300 0.78 -0.1 57,796 - MMJJ_RS00300 0.82 +1.8 57,796 - MMJJ_RS00300 0.82 -0.8 57,797 + MMJJ_RS00300 0.83 -0.9 57,797 + MMJJ_RS00300 0.83 -3.8 57,811 - MMJJ_RS00300 0.85 +2.1 57,812 + MMJJ_RS00300 0.85 -2.6 57,843 - MMJJ_RS00300 0.89 +0.5 57,844 + MMJJ_RS00300 0.89 +2.4 57,857 + +0.1 57,861 - +1.6 57,862 + +0.1 57,866 + +0.2 57,866 + -1.2 57,871 + +1.2 57,886 - -1.5 57,910 + +0.9 57,910 + -1.0 57,934 + +1.3 57,956 - +1.1 57,961 + -3.1 57,961 + +2.0 58,020 - MMJJ_RS00305 0.14 +0.9 58,020 - MMJJ_RS00305 0.14 +3.3 58,020 - MMJJ_RS00305 0.14 -0.7 58,039 + MMJJ_RS00305 0.17 +0.2 58,048 + MMJJ_RS00305 0.18 +0.8 58,056 - MMJJ_RS00305 0.20 +0.8 58,075 - MMJJ_RS00305 0.23 +1.6 58,159 + MMJJ_RS00305 0.36 -0.8 58,163 - MMJJ_RS00305 0.37 +0.9
Or see this region's nucleotide sequence