Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09390

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02385 and MMJJ_RS09390 are separated by 18 nucleotidesMMJJ_RS09390 and MMJJ_RS02390 are separated by 137 nucleotides MMJJ_RS02385: MMJJ_RS02385 - hypothetical protein, at 450,159 to 451,604 _RS02385 MMJJ_RS09390: MMJJ_RS09390 - hypothetical protein, at 451,623 to 451,787 _RS09390 MMJJ_RS02390: MMJJ_RS02390 - hypothetical protein, at 451,925 to 452,398 _RS02390 Position (kb) 451 452Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 450.628 kb on - strand, within MMJJ_RS02385at 450.628 kb on - strand, within MMJJ_RS02385at 450.647 kb on - strand, within MMJJ_RS02385at 450.679 kb on + strand, within MMJJ_RS02385at 450.679 kb on + strand, within MMJJ_RS02385at 450.727 kb on + strand, within MMJJ_RS02385at 450.727 kb on + strand, within MMJJ_RS02385at 450.736 kb on - strand, within MMJJ_RS02385at 450.737 kb on + strand, within MMJJ_RS02385at 450.737 kb on + strand, within MMJJ_RS02385at 450.737 kb on + strand, within MMJJ_RS02385at 450.741 kb on - strand, within MMJJ_RS02385at 450.741 kb on - strand, within MMJJ_RS02385at 450.741 kb on - strand, within MMJJ_RS02385at 450.742 kb on + strand, within MMJJ_RS02385at 450.742 kb on + strand, within MMJJ_RS02385at 450.744 kb on + strand, within MMJJ_RS02385at 450.771 kb on - strand, within MMJJ_RS02385at 450.774 kb on + strand, within MMJJ_RS02385at 450.795 kb on - strand, within MMJJ_RS02385at 450.823 kb on + strand, within MMJJ_RS02385at 450.823 kb on + strand, within MMJJ_RS02385at 450.857 kb on - strand, within MMJJ_RS02385at 450.903 kb on - strand, within MMJJ_RS02385at 450.926 kb on + strand, within MMJJ_RS02385at 450.946 kb on - strand, within MMJJ_RS02385at 450.961 kb on - strand, within MMJJ_RS02385at 450.962 kb on + strand, within MMJJ_RS02385at 450.962 kb on + strand, within MMJJ_RS02385at 450.992 kb on - strand, within MMJJ_RS02385at 450.995 kb on + strand, within MMJJ_RS02385at 451.002 kb on - strand, within MMJJ_RS02385at 451.059 kb on + strand, within MMJJ_RS02385at 451.059 kb on + strand, within MMJJ_RS02385at 451.068 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.082 kb on - strand, within MMJJ_RS02385at 451.166 kb on + strand, within MMJJ_RS02385at 451.182 kb on - strand, within MMJJ_RS02385at 451.182 kb on - strand, within MMJJ_RS02385at 451.198 kb on - strand, within MMJJ_RS02385at 451.219 kb on + strand, within MMJJ_RS02385at 451.228 kb on + strand, within MMJJ_RS02385at 451.238 kb on - strand, within MMJJ_RS02385at 451.241 kb on + strand, within MMJJ_RS02385at 451.277 kb on - strand, within MMJJ_RS02385at 451.281 kb on + strand, within MMJJ_RS02385at 451.281 kb on + strand, within MMJJ_RS02385at 451.294 kb on + strand, within MMJJ_RS02385at 451.297 kb on - strand, within MMJJ_RS02385at 451.297 kb on - strand, within MMJJ_RS02385at 451.297 kb on - strand, within MMJJ_RS02385at 451.297 kb on - strand, within MMJJ_RS02385at 451.297 kb on - strand, within MMJJ_RS02385at 451.297 kb on - strand, within MMJJ_RS02385at 451.297 kb on - strand, within MMJJ_RS02385at 451.297 kb on - strand, within MMJJ_RS02385at 451.298 kb on + strand, within MMJJ_RS02385at 451.298 kb on + strand, within MMJJ_RS02385at 451.299 kb on - strand, within MMJJ_RS02385at 451.300 kb on + strand, within MMJJ_RS02385at 451.300 kb on + strand, within MMJJ_RS02385at 451.301 kb on - strand, within MMJJ_RS02385at 451.301 kb on - strand, within MMJJ_RS02385at 451.301 kb on - strand, within MMJJ_RS02385at 451.302 kb on + strand, within MMJJ_RS02385at 451.303 kb on - strand, within MMJJ_RS02385at 451.304 kb on + strand, within MMJJ_RS02385at 451.319 kb on - strand, within MMJJ_RS02385at 451.319 kb on - strand, within MMJJ_RS02385at 451.326 kb on + strand, within MMJJ_RS02385at 451.331 kb on - strand, within MMJJ_RS02385at 451.332 kb on + strand, within MMJJ_RS02385at 451.332 kb on + strand, within MMJJ_RS02385at 451.339 kb on + strand, within MMJJ_RS02385at 451.339 kb on + strand, within MMJJ_RS02385at 451.387 kb on - strand, within MMJJ_RS02385at 451.387 kb on - strand, within MMJJ_RS02385at 451.387 kb on - strand, within MMJJ_RS02385at 451.388 kb on + strand, within MMJJ_RS02385at 451.388 kb on + strand, within MMJJ_RS02385at 451.388 kb on + strand, within MMJJ_RS02385at 451.389 kb on - strand, within MMJJ_RS02385at 451.389 kb on - strand, within MMJJ_RS02385at 451.389 kb on - strand, within MMJJ_RS02385at 451.390 kb on + strand, within MMJJ_RS02385at 451.392 kb on - strand, within MMJJ_RS02385at 451.392 kb on - strand, within MMJJ_RS02385at 451.392 kb on - strand, within MMJJ_RS02385at 451.392 kb on - strand, within MMJJ_RS02385at 451.392 kb on - strand, within MMJJ_RS02385at 451.392 kb on - strand, within MMJJ_RS02385at 451.393 kb on + strand, within MMJJ_RS02385at 451.393 kb on + strand, within MMJJ_RS02385at 451.393 kb on + strand, within MMJJ_RS02385at 451.427 kb on - strand, within MMJJ_RS02385at 451.428 kb on + strand, within MMJJ_RS02385at 451.434 kb on - strand, within MMJJ_RS02385at 451.454 kb on + strand, within MMJJ_RS02385at 451.538 kb on - strandat 451.639 kb on - strandat 451.649 kb on + strand, within MMJJ_RS09390at 451.652 kb on - strand, within MMJJ_RS09390at 451.653 kb on + strand, within MMJJ_RS09390at 451.765 kb on + strand, within MMJJ_RS09390at 451.788 kb on + strandat 451.792 kb on + strandat 451.792 kb on + strandat 451.794 kb on - strandat 451.794 kb on - strandat 451.844 kb on - strandat 451.844 kb on - strandat 451.844 kb on - strandat 451.844 kb on - strandat 451.845 kb on + strandat 451.845 kb on + strandat 451.845 kb on + strandat 451.846 kb on - strandat 451.847 kb on + strandat 451.847 kb on + strandat 451.847 kb on + strandat 451.847 kb on + strandat 451.847 kb on + strandat 451.854 kb on - strandat 451.859 kb on - strandat 451.895 kb on + strandat 451.905 kb on - strandat 451.944 kb on + strandat 451.996 kb on - strand, within MMJJ_RS02390at 452.001 kb on + strand, within MMJJ_RS02390at 452.023 kb on - strand, within MMJJ_RS02390at 452.051 kb on - strand, within MMJJ_RS02390at 452.052 kb on + strand, within MMJJ_RS02390at 452.052 kb on + strand, within MMJJ_RS02390at 452.053 kb on - strand, within MMJJ_RS02390at 452.053 kb on - strand, within MMJJ_RS02390at 452.072 kb on - strand, within MMJJ_RS02390at 452.072 kb on - strand, within MMJJ_RS02390at 452.073 kb on + strand, within MMJJ_RS02390at 452.110 kb on - strand, within MMJJ_RS02390at 452.110 kb on - strand, within MMJJ_RS02390at 452.114 kb on - strand, within MMJJ_RS02390at 452.114 kb on - strand, within MMJJ_RS02390at 452.115 kb on + strand, within MMJJ_RS02390at 452.115 kb on + strand, within MMJJ_RS02390at 452.115 kb on + strand, within MMJJ_RS02390at 452.115 kb on + strand, within MMJJ_RS02390at 452.115 kb on + strand, within MMJJ_RS02390at 452.117 kb on - strand, within MMJJ_RS02390at 452.117 kb on - strand, within MMJJ_RS02390at 452.117 kb on - strand, within MMJJ_RS02390at 452.117 kb on - strand, within MMJJ_RS02390at 452.117 kb on - strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.118 kb on + strand, within MMJJ_RS02390at 452.120 kb on + strand, within MMJJ_RS02390at 452.120 kb on + strand, within MMJJ_RS02390at 452.120 kb on + strand, within MMJJ_RS02390at 452.120 kb on + strand, within MMJJ_RS02390at 452.122 kb on + strand, within MMJJ_RS02390at 452.128 kb on + strand, within MMJJ_RS02390at 452.263 kb on - strand, within MMJJ_RS02390at 452.263 kb on - strand, within MMJJ_RS02390at 452.264 kb on + strand, within MMJJ_RS02390at 452.266 kb on + strand, within MMJJ_RS02390at 452.275 kb on - strand, within MMJJ_RS02390at 452.292 kb on + strand, within MMJJ_RS02390at 452.313 kb on + strand, within MMJJ_RS02390at 452.419 kb on - strandat 452.422 kb on - strandat 452.422 kb on - strandat 452.422 kb on - strandat 452.422 kb on - strandat 452.449 kb on - strandat 452.502 kb on - strandat 452.524 kb on - strandat 452.530 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM
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450,628 - MMJJ_RS02385 0.32 -3.1
450,628 - MMJJ_RS02385 0.32 -2.2
450,647 - MMJJ_RS02385 0.34 -0.4
450,679 + MMJJ_RS02385 0.36 +1.3
450,679 + MMJJ_RS02385 0.36 +0.8
450,727 + MMJJ_RS02385 0.39 -2.3
450,727 + MMJJ_RS02385 0.39 -0.2
450,736 - MMJJ_RS02385 0.40 -0.3
450,737 + MMJJ_RS02385 0.40 +2.6
450,737 + MMJJ_RS02385 0.40 -2.0
450,737 + MMJJ_RS02385 0.40 +0.7
450,741 - MMJJ_RS02385 0.40 +2.3
450,741 - MMJJ_RS02385 0.40 +2.2
450,741 - MMJJ_RS02385 0.40 -2.8
450,742 + MMJJ_RS02385 0.40 -0.5
450,742 + MMJJ_RS02385 0.40 -1.7
450,744 + MMJJ_RS02385 0.40 +0.4
450,771 - MMJJ_RS02385 0.42 -1.6
450,774 + MMJJ_RS02385 0.43 -0.8
450,795 - MMJJ_RS02385 0.44 -2.7
450,823 + MMJJ_RS02385 0.46 -2.3
450,823 + MMJJ_RS02385 0.46 +1.5
450,857 - MMJJ_RS02385 0.48 -3.8
450,903 - MMJJ_RS02385 0.51 -1.6
450,926 + MMJJ_RS02385 0.53 -3.5
450,946 - MMJJ_RS02385 0.54 -2.4
450,961 - MMJJ_RS02385 0.55 +1.7
450,962 + MMJJ_RS02385 0.56 +1.4
450,962 + MMJJ_RS02385 0.56 -2.9
450,992 - MMJJ_RS02385 0.58 -2.7
450,995 + MMJJ_RS02385 0.58 +2.7
451,002 - MMJJ_RS02385 0.58 +1.1
451,059 + MMJJ_RS02385 0.62 +1.0
451,059 + MMJJ_RS02385 0.62 -0.8
451,068 - MMJJ_RS02385 0.63 +1.8
451,080 - MMJJ_RS02385 0.64 +1.0
451,080 - MMJJ_RS02385 0.64 +1.5
451,080 - MMJJ_RS02385 0.64 +0.7
451,080 - MMJJ_RS02385 0.64 -0.4
451,080 - MMJJ_RS02385 0.64 +2.6
451,080 - MMJJ_RS02385 0.64 +0.6
451,080 - MMJJ_RS02385 0.64 +1.5
451,080 - MMJJ_RS02385 0.64 -2.3
451,082 - MMJJ_RS02385 0.64 -2.7
451,166 + MMJJ_RS02385 0.70 -1.1
451,182 - MMJJ_RS02385 0.71 +0.3
451,182 - MMJJ_RS02385 0.71 -1.0
451,198 - MMJJ_RS02385 0.72 -0.3
451,219 + MMJJ_RS02385 0.73 +1.8
451,228 + MMJJ_RS02385 0.74 -2.0
451,238 - MMJJ_RS02385 0.75 -1.1
451,241 + MMJJ_RS02385 0.75 +1.6
451,277 - MMJJ_RS02385 0.77 +2.5
451,281 + MMJJ_RS02385 0.78 -1.7
451,281 + MMJJ_RS02385 0.78 -3.2
451,294 + MMJJ_RS02385 0.78 +0.5
451,297 - MMJJ_RS02385 0.79 +0.9
451,297 - MMJJ_RS02385 0.79 +3.3
451,297 - MMJJ_RS02385 0.79 +1.6
451,297 - MMJJ_RS02385 0.79 -3.1
451,297 - MMJJ_RS02385 0.79 +1.8
451,297 - MMJJ_RS02385 0.79 +2.9
451,297 - MMJJ_RS02385 0.79 -0.5
451,297 - MMJJ_RS02385 0.79 -0.2
451,298 + MMJJ_RS02385 0.79 -0.0
451,298 + MMJJ_RS02385 0.79 -1.7
451,299 - MMJJ_RS02385 0.79 -1.9
451,300 + MMJJ_RS02385 0.79 -2.7
451,300 + MMJJ_RS02385 0.79 +3.8
451,301 - MMJJ_RS02385 0.79 -0.3
451,301 - MMJJ_RS02385 0.79 -2.3
451,301 - MMJJ_RS02385 0.79 +1.9
451,302 + MMJJ_RS02385 0.79 +0.9
451,303 - MMJJ_RS02385 0.79 -1.0
451,304 + MMJJ_RS02385 0.79 -3.6
451,319 - MMJJ_RS02385 0.80 +0.9
451,319 - MMJJ_RS02385 0.80 -1.1
451,326 + MMJJ_RS02385 0.81 -0.1
451,331 - MMJJ_RS02385 0.81 -0.5
451,332 + MMJJ_RS02385 0.81 +2.2
451,332 + MMJJ_RS02385 0.81 +1.6
451,339 + MMJJ_RS02385 0.82 +0.3
451,339 + MMJJ_RS02385 0.82 +0.2
451,387 - MMJJ_RS02385 0.85 -2.4
451,387 - MMJJ_RS02385 0.85 -0.3
451,387 - MMJJ_RS02385 0.85 -3.0
451,388 + MMJJ_RS02385 0.85 +1.0
451,388 + MMJJ_RS02385 0.85 -0.1
451,388 + MMJJ_RS02385 0.85 +1.5
451,389 - MMJJ_RS02385 0.85 -1.5
451,389 - MMJJ_RS02385 0.85 +1.3
451,389 - MMJJ_RS02385 0.85 +2.0
451,390 + MMJJ_RS02385 0.85 -4.6
451,392 - MMJJ_RS02385 0.85 -0.0
451,392 - MMJJ_RS02385 0.85 +2.9
451,392 - MMJJ_RS02385 0.85 +2.1
451,392 - MMJJ_RS02385 0.85 +0.2
451,392 - MMJJ_RS02385 0.85 +1.8
451,392 - MMJJ_RS02385 0.85 +0.4
451,393 + MMJJ_RS02385 0.85 -3.5
451,393 + MMJJ_RS02385 0.85 -3.3
451,393 + MMJJ_RS02385 0.85 +0.2
451,427 - MMJJ_RS02385 0.88 +1.6
451,428 + MMJJ_RS02385 0.88 -4.3
451,434 - MMJJ_RS02385 0.88 -3.3
451,454 + MMJJ_RS02385 0.90 +2.5
451,538 - +1.9
451,639 - +3.5
451,649 + MMJJ_RS09390 0.16 -4.0
451,652 - MMJJ_RS09390 0.18 -1.4
451,653 + MMJJ_RS09390 0.18 -1.0
451,765 + MMJJ_RS09390 0.86 +0.1
451,788 + -0.0
451,792 + -0.4
451,792 + -1.6
451,794 - +0.7
451,794 - -2.7
451,844 - -4.1
451,844 - -2.2
451,844 - +1.8
451,844 - +2.3
451,845 + +1.1
451,845 + -1.4
451,845 + -0.8
451,846 - -2.7
451,847 + +2.5
451,847 + -2.1
451,847 + +0.5
451,847 + -1.2
451,847 + -2.5
451,854 - +0.1
451,859 - -2.4
451,895 + +2.7
451,905 - +0.5
451,944 + +2.1
451,996 - MMJJ_RS02390 0.15 -0.7
452,001 + MMJJ_RS02390 0.16 +0.0
452,023 - MMJJ_RS02390 0.21 -0.7
452,051 - MMJJ_RS02390 0.27 +0.0
452,052 + MMJJ_RS02390 0.27 +0.7
452,052 + MMJJ_RS02390 0.27 -2.2
452,053 - MMJJ_RS02390 0.27 -1.2
452,053 - MMJJ_RS02390 0.27 +0.2
452,072 - MMJJ_RS02390 0.31 -1.0
452,072 - MMJJ_RS02390 0.31 -1.3
452,073 + MMJJ_RS02390 0.31 -3.0
452,110 - MMJJ_RS02390 0.39 -0.8
452,110 - MMJJ_RS02390 0.39 -4.3
452,114 - MMJJ_RS02390 0.40 +0.2
452,114 - MMJJ_RS02390 0.40 +0.6
452,115 + MMJJ_RS02390 0.40 -0.0
452,115 + MMJJ_RS02390 0.40 +2.2
452,115 + MMJJ_RS02390 0.40 -0.1
452,115 + MMJJ_RS02390 0.40 +0.8
452,115 + MMJJ_RS02390 0.40 +5.7
452,117 - MMJJ_RS02390 0.41 +3.1
452,117 - MMJJ_RS02390 0.41 +0.0
452,117 - MMJJ_RS02390 0.41 +1.2
452,117 - MMJJ_RS02390 0.41 +3.8
452,117 - MMJJ_RS02390 0.41 -2.6
452,118 + MMJJ_RS02390 0.41 -3.7
452,118 + MMJJ_RS02390 0.41 -3.0
452,118 + MMJJ_RS02390 0.41 -2.0
452,118 + MMJJ_RS02390 0.41 +1.5
452,118 + MMJJ_RS02390 0.41 -1.0
452,118 + MMJJ_RS02390 0.41 -2.5
452,118 + MMJJ_RS02390 0.41 -0.2
452,118 + MMJJ_RS02390 0.41 -2.2
452,118 + MMJJ_RS02390 0.41 -0.3
452,118 + MMJJ_RS02390 0.41 -1.1
452,118 + MMJJ_RS02390 0.41 -2.6
452,120 + MMJJ_RS02390 0.41 -3.3
452,120 + MMJJ_RS02390 0.41 +1.2
452,120 + MMJJ_RS02390 0.41 +0.9
452,120 + MMJJ_RS02390 0.41 +1.9
452,122 + MMJJ_RS02390 0.42 -0.1
452,128 + MMJJ_RS02390 0.43 -4.3
452,263 - MMJJ_RS02390 0.71 -0.9
452,263 - MMJJ_RS02390 0.71 -2.8
452,264 + MMJJ_RS02390 0.72 -0.3
452,266 + MMJJ_RS02390 0.72 -2.1
452,275 - MMJJ_RS02390 0.74 -2.0
452,292 + MMJJ_RS02390 0.77 -1.3
452,313 + MMJJ_RS02390 0.82 -0.7
452,419 - +0.6
452,422 - +0.5
452,422 - -2.1
452,422 - +2.3
452,422 - -3.8
452,449 - +1.2
452,502 - +2.5
452,524 - -1.5
452,530 + -3.3

Or see this region's nucleotide sequence