Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09110

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Nitrofurantoin 0.025 mM
1,684,530	+				-2.2
1,684,557	-				-0.2
1,684,557	-				+0.8
1,684,558	+				-2.6
1,684,558	+				-2.2
1,684,608	-				+2.3
1,684,608	-				+2.4
1,684,609	+				+0.5
1,684,632	+		MMJJ_RS09105	0.11	-2.4
1,684,659	-		MMJJ_RS09105	0.13	+2.2
1,684,660	+		MMJJ_RS09105	0.13	-1.2
1,684,660	+		MMJJ_RS09105	0.13	+1.7
1,684,702	-		MMJJ_RS09105	0.18	-4.0
1,684,714	-		MMJJ_RS09105	0.19	-2.4
1,684,715	+		MMJJ_RS09105	0.19	-1.9
1,684,715	+		MMJJ_RS09105	0.19	-1.2
1,684,735	-		MMJJ_RS09105	0.21	+0.4
1,684,772	-		MMJJ_RS09105	0.25	+1.9
1,684,773	+		MMJJ_RS09105	0.25	+1.1
1,684,793	+		MMJJ_RS09105	0.27	+0.7
1,684,799	-		MMJJ_RS09105	0.28	+0.6
1,684,800	+		MMJJ_RS09105	0.28	-0.6
1,684,800	+		MMJJ_RS09105	0.28	-2.3
1,684,807	+		MMJJ_RS09105	0.29	+0.3
1,684,817	+		MMJJ_RS09105	0.30	-0.8
1,684,927	-		MMJJ_RS09105	0.41	+0.3
1,684,927	-		MMJJ_RS09105	0.41	+2.9
1,684,953	-		MMJJ_RS09105	0.44	-1.3
1,684,986	+		MMJJ_RS09105	0.47	-1.1
1,684,998	-		MMJJ_RS09105	0.48	+0.2
1,684,999	+		MMJJ_RS09105	0.49	+0.4
1,685,024	-		MMJJ_RS09105	0.51	-1.5
1,685,025	+		MMJJ_RS09105	0.51	-0.3
1,685,039	+		MMJJ_RS09105	0.53	+0.7
1,685,047	-		MMJJ_RS09105	0.54	-1.0
1,685,060	+		MMJJ_RS09105	0.55	-2.9
1,685,069	+		MMJJ_RS09105	0.56	-2.2
1,685,087	-		MMJJ_RS09105	0.58	-2.2
1,685,108	-		MMJJ_RS09105	0.60	-1.6
1,685,119	-		MMJJ_RS09105	0.61	+0.5
1,685,120	+		MMJJ_RS09105	0.61	+1.1
1,685,120	+		MMJJ_RS09105	0.61	+1.5
1,685,120	+		MMJJ_RS09105	0.61	+0.8
1,685,153	-		MMJJ_RS09105	0.64	+0.2
1,685,154	+		MMJJ_RS09105	0.65	+1.6
1,685,177	+		MMJJ_RS09105	0.67	-1.8
1,685,180	+		MMJJ_RS09105	0.67	+0.7
1,685,180	+		MMJJ_RS09105	0.67	+1.8
1,685,213	+		MMJJ_RS09105	0.71	+0.5
1,685,214	-		MMJJ_RS09105	0.71	+0.2
1,685,214	-		MMJJ_RS09105	0.71	-0.2
1,685,214	-		MMJJ_RS09105	0.71	-2.0
1,685,214	-		MMJJ_RS09105	0.71	+2.8
1,685,214	-		MMJJ_RS09105	0.71	-2.2
1,685,214	-		MMJJ_RS09105	0.71	+0.5
1,685,214	-		MMJJ_RS09105	0.71	-2.2
1,685,214	-		MMJJ_RS09105	0.71	-0.4
1,685,214	-		MMJJ_RS09105	0.71	+1.6
1,685,215	+		MMJJ_RS09105	0.71	-1.6
1,685,215	+		MMJJ_RS09105	0.71	+0.6
1,685,215	+		MMJJ_RS09105	0.71	-2.1
1,685,215	+		MMJJ_RS09105	0.71	+0.6
1,685,215	+		MMJJ_RS09105	0.71	+1.3
1,685,215	+		MMJJ_RS09105	0.71	+2.8
1,685,215	+		MMJJ_RS09105	0.71	-0.1
1,685,215	+		MMJJ_RS09105	0.71	-2.2
1,685,226	+		MMJJ_RS09105	0.72	-1.6
1,685,232	-		MMJJ_RS09105	0.73	-2.3
1,685,233	+		MMJJ_RS09105	0.73	+1.9
1,685,235	-		MMJJ_RS09105	0.73	+0.9
1,685,235	-		MMJJ_RS09105	0.73	-1.0
1,685,236	+		MMJJ_RS09105	0.73	-3.7
1,685,236	+		MMJJ_RS09105	0.73	-1.7
1,685,243	+		MMJJ_RS09105	0.74	-1.3
1,685,273	+		MMJJ_RS09105	0.77	-1.4
1,685,278	-		MMJJ_RS09105	0.77	-1.2
1,685,291	+		MMJJ_RS09105	0.79	-0.6
1,685,320	-		MMJJ_RS09105	0.82	+1.6
1,685,466	+				-1.3
1,685,505	-				-1.6
1,685,506	+				-1.8
1,685,529	+				+0.9
1,685,537	-				-0.3
1,685,567	-				-2.1
1,685,567	-				-0.6
1,685,572	-				-2.1
1,685,573	+				+4.9
1,685,573	+				+1.3
1,685,629	-		MMJJ_RS09110	0.16	-2.6
1,685,646	+		MMJJ_RS09110	0.18	-3.8
1,685,647	-		MMJJ_RS09110	0.18	-1.7
1,685,648	+		MMJJ_RS09110	0.18	-2.4
1,685,728	+		MMJJ_RS09110	0.28	-2.1
1,685,730	+		MMJJ_RS09110	0.28	+3.3
1,685,730	+		MMJJ_RS09110	0.28	+1.8
1,685,798	+		MMJJ_RS09110	0.37	-2.8
1,685,844	-		MMJJ_RS09110	0.42	-0.4
1,685,844	-		MMJJ_RS09110	0.42	-1.5
1,685,844	-		MMJJ_RS09110	0.42	+2.3
1,685,845	+		MMJJ_RS09110	0.42	-1.4
1,685,845	+		MMJJ_RS09110	0.42	-0.5
1,685,845	+		MMJJ_RS09110	0.42	+1.9
1,685,845	+		MMJJ_RS09110	0.42	+1.6
1,685,846	-		MMJJ_RS09110	0.43	+4.1
1,685,846	-		MMJJ_RS09110	0.43	+0.9
1,685,846	-		MMJJ_RS09110	0.43	+1.6
1,685,847	+		MMJJ_RS09110	0.43	+0.1
1,685,855	+		MMJJ_RS09110	0.44	-1.4
1,685,875	-		MMJJ_RS09110	0.46	-0.5
1,685,875	-		MMJJ_RS09110	0.46	-1.5
1,685,876	+		MMJJ_RS09110	0.46	-2.7
1,685,880	-		MMJJ_RS09110	0.47	+1.6
1,685,900	-		MMJJ_RS09110	0.49	-3.6
1,685,900	-		MMJJ_RS09110	0.49	-2.0
1,685,907	-		MMJJ_RS09110	0.50	-0.7
1,685,908	+		MMJJ_RS09110	0.50	-0.2
1,685,939	-		MMJJ_RS09110	0.54	+0.7
1,685,939	-		MMJJ_RS09110	0.54	-1.1
1,685,939	-		MMJJ_RS09110	0.54	+4.8
1,685,939	-		MMJJ_RS09110	0.54	-1.3
1,685,939	-		MMJJ_RS09110	0.54	-1.8
1,685,939	-		MMJJ_RS09110	0.54	+1.9
1,685,940	+		MMJJ_RS09110	0.54	-3.4
1,685,940	+		MMJJ_RS09110	0.54	+0.8
1,685,940	+		MMJJ_RS09110	0.54	-1.8
1,685,940	+		MMJJ_RS09110	0.54	+0.6
1,685,943	-		MMJJ_RS09110	0.55	+2.9
1,685,943	-		MMJJ_RS09110	0.55	-1.0
1,685,943	-		MMJJ_RS09110	0.55	+1.1
1,685,943	-		MMJJ_RS09110	0.55	-0.9
1,685,943	-		MMJJ_RS09110	0.55	-0.7
1,685,944	+		MMJJ_RS09110	0.55	-3.5
1,685,944	+		MMJJ_RS09110	0.55	+0.8
1,685,944	+		MMJJ_RS09110	0.55	-0.2
1,685,944	+		MMJJ_RS09110	0.55	+0.8
1,685,944	+		MMJJ_RS09110	0.55	-2.3
1,685,945	-		MMJJ_RS09110	0.55	-1.1
1,685,945	-		MMJJ_RS09110	0.55	+0.8
1,685,946	+		MMJJ_RS09110	0.55	-0.1
1,685,971	+		MMJJ_RS09110	0.58	+0.6
1,686,047	+		MMJJ_RS09110	0.67	-0.3
1,686,096	+		MMJJ_RS09110	0.73	-3.2
1,686,107	+		MMJJ_RS09110	0.75	+3.2
1,686,136	-		MMJJ_RS09110	0.78	-2.1
1,686,137	+		MMJJ_RS09110	0.79	-1.3
1,686,137	+		MMJJ_RS09110	0.79	+0.9
1,686,137	+		MMJJ_RS09110	0.79	-0.4
1,686,139	-		MMJJ_RS09110	0.79	-2.0
1,686,139	-		MMJJ_RS09110	0.79	-3.0
1,686,139	-		MMJJ_RS09110	0.79	-2.2
1,686,140	+		MMJJ_RS09110	0.79	-1.0
1,686,140	+		MMJJ_RS09110	0.79	+2.6
1,686,140	+		MMJJ_RS09110	0.79	+1.5
1,686,140	+		MMJJ_RS09110	0.79	-0.9
1,686,141	-		MMJJ_RS09110	0.79	-2.7
1,686,142	+		MMJJ_RS09110	0.79	+0.7
1,686,142	+		MMJJ_RS09110	0.79	+1.2
1,686,142	+		MMJJ_RS09110	0.79	+0.8
1,686,266	-				-2.0
1,686,272	+				+2.6
1,686,275	+				-0.7
1,686,278	-				-2.4
1,686,315	+				+0.8
1,686,323	-				-1.6
1,686,324	+				+2.4
1,686,327	-				-2.4
1,686,327	-				-0.1
1,686,327	-				+0.3
1,686,328	+				-0.9
1,686,329	-				+1.6
1,686,329	-				-1.1
1,686,329	-				-0.0
1,686,329	-				-3.1
1,686,330	+				+3.0
1,686,366	-				+0.2
1,686,380	+				+1.0