Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08545

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Nitrofurantoin 0.025 mM
1,571,266	-		MMJJ_RS08535	0.46	-1.6
1,571,589	+		MMJJ_RS08535	0.86	-3.0
1,571,714	-				-0.2
1,571,718	+				-0.0
1,571,720	-				+0.3
1,571,722	-				-0.1
1,571,726	+				-0.4
1,571,726	+				-0.8
1,571,729	-				-2.9
1,571,730	+				-2.6
1,571,730	+				-0.9
1,571,732	-				+2.1
1,571,754	+				-1.9
1,571,858	+		MMJJ_RS08540	0.23	+0.2
1,571,887	-		MMJJ_RS08540	0.29	+0.4
1,571,887	-		MMJJ_RS08540	0.29	+3.2
1,571,888	+		MMJJ_RS08540	0.29	+1.1
1,571,888	+		MMJJ_RS08540	0.29	+1.3
1,571,891	-		MMJJ_RS08540	0.30	-0.0
1,571,891	-		MMJJ_RS08540	0.30	-3.3
1,571,891	-		MMJJ_RS08540	0.30	+0.7
1,571,892	+		MMJJ_RS08540	0.30	-3.5
1,571,892	+		MMJJ_RS08540	0.30	+4.5
1,571,892	+		MMJJ_RS08540	0.30	-2.8
1,571,904	-		MMJJ_RS08540	0.32	-2.3
1,571,904	-		MMJJ_RS08540	0.32	+1.2
1,571,905	+		MMJJ_RS08540	0.33	-2.1
1,571,905	+		MMJJ_RS08540	0.33	-0.5
1,571,905	+		MMJJ_RS08540	0.33	+0.6
1,571,905	+		MMJJ_RS08540	0.33	+1.7
1,571,906	-		MMJJ_RS08540	0.33	+0.2
1,571,907	+		MMJJ_RS08540	0.33	+1.3
1,571,907	+		MMJJ_RS08540	0.33	+1.9
1,571,910	+		MMJJ_RS08540	0.34	-0.2
1,571,917	-		MMJJ_RS08540	0.35	-1.5
1,571,918	+		MMJJ_RS08540	0.35	-1.0
1,571,918	+		MMJJ_RS08540	0.35	-3.3
1,571,918	+		MMJJ_RS08540	0.35	+0.8
1,571,924	-		MMJJ_RS08540	0.37	-1.0
1,571,941	+		MMJJ_RS08540	0.40	-1.6
1,571,941	+		MMJJ_RS08540	0.40	-0.1
1,571,941	+		MMJJ_RS08540	0.40	+1.3
1,571,944	+		MMJJ_RS08540	0.41	+0.8
1,571,949	+		MMJJ_RS08540	0.42	+2.1
1,571,969	-		MMJJ_RS08540	0.46	+0.0
1,571,969	-		MMJJ_RS08540	0.46	+2.7
1,571,969	-		MMJJ_RS08540	0.46	-2.6
1,571,969	-		MMJJ_RS08540	0.46	+1.5
1,571,969	-		MMJJ_RS08540	0.46	+1.0
1,571,970	+		MMJJ_RS08540	0.46	+1.5
1,571,972	+		MMJJ_RS08540	0.47	-0.4
1,571,982	+		MMJJ_RS08540	0.49	+1.8
1,571,982	+		MMJJ_RS08540	0.49	-0.8
1,572,007	-		MMJJ_RS08540	0.54	-0.9
1,572,008	+		MMJJ_RS08540	0.54	+1.6
1,572,029	-		MMJJ_RS08540	0.59	-1.6
1,572,029	-		MMJJ_RS08540	0.59	-0.9
1,572,047	-		MMJJ_RS08540	0.63	-1.1
1,572,048	+		MMJJ_RS08540	0.63	+4.3
1,572,048	+		MMJJ_RS08540	0.63	+2.0
1,572,108	-		MMJJ_RS08540	0.76	-1.1
1,572,146	-		MMJJ_RS08540	0.84	+0.2
1,572,147	+		MMJJ_RS08540	0.84	-1.6
1,572,149	-		MMJJ_RS08540	0.84	-2.2
1,572,149	-		MMJJ_RS08540	0.84	+2.0
1,572,149	-		MMJJ_RS08540	0.84	-1.4
1,572,149	-		MMJJ_RS08540	0.84	-0.0
1,572,149	-		MMJJ_RS08540	0.84	+1.2
1,572,149	-		MMJJ_RS08540	0.84	+2.8
1,572,149	-		MMJJ_RS08540	0.84	+1.1
1,572,149	-		MMJJ_RS08540	0.84	+1.1
1,572,149	-		MMJJ_RS08540	0.84	+1.4
1,572,149	-				+2.6
1,572,149	-		MMJJ_RS08540	0.84	-1.2
1,572,149	-		MMJJ_RS08540	0.84	+1.4
1,572,149	-		MMJJ_RS08540	0.84	-2.3
1,572,149	-		MMJJ_RS08540	0.84	+1.8
1,572,150	+		MMJJ_RS08540	0.84	+3.8
1,572,150	+		MMJJ_RS08540	0.84	+1.1
1,572,150	+		MMJJ_RS08540	0.84	-2.7
1,572,150	+		MMJJ_RS08540	0.84	-2.8
1,572,150	+		MMJJ_RS08540	0.84	+0.3
1,572,150	+		MMJJ_RS08540	0.84	+0.5
1,572,150	+		MMJJ_RS08540	0.84	+0.7
1,572,150	+		MMJJ_RS08540	0.84	-3.6
1,572,150	+		MMJJ_RS08540	0.84	-0.7
1,572,150	+		MMJJ_RS08540	0.84	+0.2
1,572,151	-		MMJJ_RS08540	0.85	-0.8
1,572,151	-		MMJJ_RS08540	0.85	-2.1
1,572,151	-		MMJJ_RS08540	0.85	+2.4
1,572,151	-		MMJJ_RS08540	0.85	+1.3
1,572,151	-		MMJJ_RS08540	0.85	-3.8
1,572,151	-		MMJJ_RS08540	0.85	+0.4
1,572,152	+		MMJJ_RS08540	0.85	-1.7
1,572,152	+		MMJJ_RS08540	0.85	-2.0
1,572,152	+		MMJJ_RS08540	0.85	+3.3
1,572,163	-		MMJJ_RS08540	0.87	-0.1
1,572,164	+		MMJJ_RS08540	0.87	+0.9
1,572,164	+		MMJJ_RS08540	0.87	-3.9
1,572,165	-		MMJJ_RS08540	0.88	+0.4
1,572,165	-		MMJJ_RS08540	0.88	-0.9
1,572,166	+		MMJJ_RS08540	0.88	+1.7
1,572,166	+		MMJJ_RS08540	0.88	+1.0
1,572,171	-		MMJJ_RS08540	0.89	+1.5
1,572,171	-		MMJJ_RS08540	0.89	+1.0
1,572,171	-		MMJJ_RS08540	0.89	-1.5
1,572,171	-		MMJJ_RS08540	0.89	+1.6
1,572,172	+		MMJJ_RS08540	0.89	-3.5
1,572,186	+				-0.4
1,572,202	+				+0.2
1,572,228	-				+4.0
1,572,229	+				-0.1
1,572,248	-				+2.3
1,572,248	-				-3.8
1,572,248	-				-0.4
1,572,248	-				+2.6
1,572,248	-				-2.4
1,572,249	+				-2.6
1,572,249	+				+0.2
1,572,249	+				+1.6
1,572,249	+				-2.6
1,572,249	+				-0.8
1,572,249	+				-2.3
1,572,249	+				+2.4
1,572,249	+				-1.2
1,572,250	-				-1.9
1,572,250	-				-3.5
1,572,255	-				+1.0
1,572,255	-				-1.6
1,572,256	+				+5.5
1,572,256	+				-0.1
1,572,256	+				-2.1
1,572,256	+				+2.4
1,572,259	-				-0.2
1,572,259	-				-2.0
1,572,259	-				+2.5
1,572,260	+				-1.8
1,572,260	+				-2.3
1,572,262	-				-1.3
1,572,268	+				-0.9
1,572,282	-				-0.6
1,572,283	+				+0.6
1,572,540	-		MMJJ_RS08545	0.29	+2.0
1,572,795	-				+1.0
1,572,797	-		MMJJ_RS08545	0.56	+0.4
1,572,811	-		MMJJ_RS08545	0.57	-1.4
1,573,195	-				+1.0
1,573,195	-				+2.0
1,573,271	-				+0.6
1,573,276	+				+1.4
1,573,278	-				-2.0
1,573,278	-				+1.3
1,573,279	+				-1.6
1,573,279	+				-1.8
1,573,279	+				+2.2
1,573,279	+				+4.0
1,573,282	-				-1.4
1,573,282	-				-4.4
1,573,282	-				+0.6
1,573,283	+				-3.4
1,573,288	-				+3.3
1,573,288	-				-2.3
1,573,302	+				-1.9
1,573,311	-				+2.6
1,573,320	-				+1.0
1,573,345	-				+0.8
1,573,345	-				+1.1
1,573,346	+				+2.4
1,573,347	-				+3.3
1,573,350	+				+2.3
1,573,363	-				+0.9
1,573,366	-				-0.7
1,573,367	+				+1.0
1,573,432	-				-0.8
1,573,433	+				-0.7
1,573,445	+				-3.2
1,573,445	+				-1.9
1,573,480	-				-2.4
1,573,501	-				-0.6
1,573,501	-				-1.6
1,573,501	-				+1.0
1,573,502	+				-1.4
1,573,504	+				+2.9
1,573,515	-				-2.0
1,573,515	-				-3.5
1,573,516	+				+1.9
1,573,519	-				-0.1
1,573,529	-				-1.4
1,573,529	-				+1.0
1,573,529	-				+1.6
1,573,531	-				-0.2
1,573,531	-				+0.9
1,573,534	-				+0.5
1,573,534	-				-1.6
1,573,535	+				+1.4
1,573,644	-				-0.6
1,573,652	-				-1.2
1,573,652	-				-2.1
1,573,676	-				+0.7
1,573,682	+				+0.6
1,573,722	-		MMJJ_RS08550	0.13	-1.2
1,573,808	+		MMJJ_RS08550	0.19	+2.4
1,573,941	-		MMJJ_RS08550	0.29	-0.3
1,573,941	-		MMJJ_RS08550	0.29	-1.9
1,573,942	+		MMJJ_RS08550	0.29	+0.1
1,573,944	+		MMJJ_RS08550	0.29	+0.5
1,573,944	+		MMJJ_RS08550	0.29	+0.4
1,573,960	-		MMJJ_RS08550	0.31	-0.2
1,573,984	+		MMJJ_RS08550	0.32	+0.4
1,573,984	+		MMJJ_RS08550	0.32	+1.5
1,574,030	+		MMJJ_RS08550	0.36	-1.1
1,574,049	+		MMJJ_RS08550	0.37	+1.1
1,574,061	+		MMJJ_RS08550	0.38	-2.6
1,574,061	+		MMJJ_RS08550	0.38	-0.4
1,574,123	-		MMJJ_RS08550	0.43	-1.8
1,574,123	-		MMJJ_RS08550	0.43	+1.2
1,574,124	+		MMJJ_RS08550	0.43	-2.9
1,574,124	+		MMJJ_RS08550	0.43	-0.8
1,574,158	+		MMJJ_RS08550	0.46	-3.4
1,574,162	-		MMJJ_RS08550	0.46	+0.5
1,574,211	-		MMJJ_RS08550	0.50	+1.8