Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06760

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Nitrofurantoin 0.025 mM
1,247,052	-				-1.8
1,247,053	+				+0.8
1,247,056	-				+0.1
1,247,056	-				+0.7
1,247,058	-				+1.2
1,247,067	-				-2.5
1,247,067	-				-3.6
1,247,068	+				-3.3
1,247,094	+				+0.3
1,247,094	+				-0.9
1,247,095	-				+0.7
1,247,103	+				-1.9
1,247,122	+				+1.0
1,247,153	+				+1.0
1,247,299	-		MMJJ_RS06755	0.21	-5.0
1,247,299	-		MMJJ_RS06755	0.21	-1.7
1,247,300	+		MMJJ_RS06755	0.22	-1.7
1,247,300	+		MMJJ_RS06755	0.22	-0.9
1,247,303	-		MMJJ_RS06755	0.22	-3.0
1,247,303	-		MMJJ_RS06755	0.22	+0.6
1,247,366	+		MMJJ_RS06755	0.29	-0.9
1,247,402	+		MMJJ_RS06755	0.32	-2.6
1,247,402	+		MMJJ_RS06755	0.32	+0.2
1,247,403	-		MMJJ_RS06755	0.32	+1.8
1,247,456	+		MMJJ_RS06755	0.38	-0.7
1,247,480	+		MMJJ_RS06755	0.41	-1.9
1,247,485	-		MMJJ_RS06755	0.41	-1.1
1,247,591	-				+1.6
1,247,591	-		MMJJ_RS06755	0.53	-3.4
1,247,592	+		MMJJ_RS06755	0.53	-1.3
1,247,598	+		MMJJ_RS06755	0.53	-1.7
1,247,600	-		MMJJ_RS06755	0.53	-4.7
1,247,626	-		MMJJ_RS06755	0.56	-2.7
1,247,663	+		MMJJ_RS06755	0.60	-4.9
1,247,663	+		MMJJ_RS06755	0.60	-3.4
1,247,673	-		MMJJ_RS06755	0.61	-3.0
1,247,673	-		MMJJ_RS06755	0.61	-2.1
1,247,706	-		MMJJ_RS06755	0.65	-2.2
1,247,715	-		MMJJ_RS06755	0.66	-2.0
1,247,716	+		MMJJ_RS06755	0.66	+1.2
1,247,760	-		MMJJ_RS06755	0.71	-1.1
1,247,772	-		MMJJ_RS06755	0.72	-2.0
1,247,772	-		MMJJ_RS06755	0.72	-2.1
1,247,772	-		MMJJ_RS06755	0.72	-2.4
1,247,772	-		MMJJ_RS06755	0.72	-2.9
1,247,773	+		MMJJ_RS06755	0.72	-3.8
1,247,773	+		MMJJ_RS06755	0.72	-0.4
1,247,773	+		MMJJ_RS06755	0.72	-4.2
1,247,773	+		MMJJ_RS06755	0.72	-0.9
1,247,773	+		MMJJ_RS06755	0.72	-2.3
1,247,773	+		MMJJ_RS06755	0.72	-0.4
1,247,774	-		MMJJ_RS06755	0.72	-1.5
1,247,774	-		MMJJ_RS06755	0.72	-2.0
1,247,774	-		MMJJ_RS06755	0.72	-0.5
1,247,775	+		MMJJ_RS06755	0.72	+1.1
1,247,775	+		MMJJ_RS06755	0.72	-3.8
1,247,846	+		MMJJ_RS06755	0.80	+1.5
1,247,852	+		MMJJ_RS06755	0.80	-4.3
1,247,857	-		MMJJ_RS06755	0.81	+0.5
1,247,903	-		MMJJ_RS06755	0.86	-1.3
1,247,904	+		MMJJ_RS06755	0.86	-3.4
1,247,904	+		MMJJ_RS06755	0.86	-0.7
1,247,904	+		MMJJ_RS06755	0.86	-2.2
1,247,905	-		MMJJ_RS06755	0.86	-0.7
1,247,906	+		MMJJ_RS06755	0.86	-1.8
1,247,924	-		MMJJ_RS06755	0.88	-4.5
1,247,925	+		MMJJ_RS06755	0.88	-2.6
1,247,927	-		MMJJ_RS06755	0.88	+1.1
1,247,933	-		MMJJ_RS06755	0.89	-3.2
1,247,983	-				-2.7
1,247,983	-				-0.4
1,248,007	-				-2.4
1,248,027	-				-3.1
1,248,028	+				-0.4
1,248,031	-				-2.3
1,248,031	-				-2.6
1,248,031	-				-1.7
1,248,032	+				+2.8
1,248,088	+				-0.4
1,248,094	+				-0.2
1,248,143	+				-0.8
1,248,143	+				-1.2
1,248,159	-				-1.1
1,248,163	-				-0.4
1,248,182	+				+4.6
1,248,210	-		MMJJ_RS06760	0.12	+0.6
1,248,210	-				+0.6
1,248,211	+		MMJJ_RS06760	0.12	-2.1
1,248,214	-		MMJJ_RS06760	0.12	-1.1
1,248,217	-		MMJJ_RS06760	0.12	-1.1
1,248,302	-		MMJJ_RS06760	0.19	-0.8
1,248,390	+		MMJJ_RS06760	0.25	-3.0
1,248,439	+		MMJJ_RS06760	0.29	-0.4
1,248,456	-		MMJJ_RS06760	0.30	-0.4
1,248,463	+		MMJJ_RS06760	0.31	-1.9
1,248,506	-		MMJJ_RS06760	0.34	+0.3
1,248,511	+		MMJJ_RS06760	0.34	-0.4
1,248,511	+		MMJJ_RS06760	0.34	-0.2
1,248,511	+		MMJJ_RS06760	0.34	-0.9
1,249,006	-		MMJJ_RS06760	0.71	+4.2
1,249,245	-		MMJJ_RS06760	0.89	+2.6
1,249,271	+				-0.2
1,249,273	+				-0.7
1,249,301	+				+1.6
1,249,305	-				+1.1
1,249,305	-				+2.6
1,249,338	-				+1.1
1,249,343	+				+0.6
1,249,385	+				-0.2
1,249,425	+				-1.4
1,249,451	-				+1.0
1,249,451	-				-2.0
1,249,456	-				-2.2
1,249,460	-				+0.9
1,249,461	+				-0.7
1,249,475	-				-2.1
1,249,490	+				-1.3
1,249,497	+				+2.3
1,249,529	+				-1.4
1,249,567	-				+1.5
1,249,567	-				+2.1
1,249,571	-				-0.2
1,249,583	+				+1.8
1,249,588	+		MMJJ_RS06765	0.10	-2.4
1,249,594	-		MMJJ_RS06765	0.11	+0.7
1,249,616	+		MMJJ_RS06765	0.14	-1.5
1,249,622	+		MMJJ_RS06765	0.15	+0.3
1,249,627	-		MMJJ_RS06765	0.16	-2.2
1,249,627	-		MMJJ_RS06765	0.16	-1.2
1,249,627	-		MMJJ_RS06765	0.16	-2.8
1,249,628	+		MMJJ_RS06765	0.16	-0.1
1,249,628	+		MMJJ_RS06765	0.16	-0.4
1,249,631	-		MMJJ_RS06765	0.16	-2.1
1,249,631	-		MMJJ_RS06765	0.16	-1.9
1,249,631	-				+1.6
1,249,631	-		MMJJ_RS06765	0.16	-0.1
1,249,631	-		MMJJ_RS06765	0.16	+0.3
1,249,632	+		MMJJ_RS06765	0.16	-0.5
1,249,632	+		MMJJ_RS06765	0.16	+2.6
1,249,632	+		MMJJ_RS06765	0.16	-0.5
1,249,637	-		MMJJ_RS06765	0.17	+0.6
1,249,638	+		MMJJ_RS06765	0.17	-1.6
1,249,639	-		MMJJ_RS06765	0.17	+0.1
1,249,639	-		MMJJ_RS06765	0.17	-1.8
1,249,640	+		MMJJ_RS06765	0.17	-1.5
1,249,640	+		MMJJ_RS06765	0.17	+0.9
1,249,649	-		MMJJ_RS06765	0.19	+0.6
1,249,650	+		MMJJ_RS06765	0.19	-0.0
1,249,650	+		MMJJ_RS06765	0.19	-0.1
1,249,676	+		MMJJ_RS06765	0.22	+0.7
1,249,689	-		MMJJ_RS06765	0.24	-3.7
1,249,690	+		MMJJ_RS06765	0.24	+0.1
1,249,690	+		MMJJ_RS06765	0.24	-4.2
1,249,711	-		MMJJ_RS06765	0.27	-1.4
1,249,712	+		MMJJ_RS06765	0.27	+2.7
1,249,731	+		MMJJ_RS06765	0.30	-0.3
1,249,750	+		MMJJ_RS06765	0.32	-0.1
1,249,760	-		MMJJ_RS06765	0.34	+1.5
1,249,760	-		MMJJ_RS06765	0.34	+1.0
1,249,762	-		MMJJ_RS06765	0.34	-4.8
1,249,762	-		MMJJ_RS06765	0.34	+2.7
1,249,763	+		MMJJ_RS06765	0.34	-2.2
1,249,766	-		MMJJ_RS06765	0.34	-1.5
1,249,767	+		MMJJ_RS06765	0.35	-0.7
1,249,783	-		MMJJ_RS06765	0.37	-1.2
1,249,783	-		MMJJ_RS06765	0.37	+1.8
1,249,783	-		MMJJ_RS06765	0.37	-0.8
1,249,783	-		MMJJ_RS06765	0.37	+0.6
1,249,788	+		MMJJ_RS06765	0.37	-2.1
1,249,788	+		MMJJ_RS06765	0.37	-1.1
1,249,789	-		MMJJ_RS06765	0.38	-3.6
1,249,815	-		MMJJ_RS06765	0.41	+0.8
1,249,816	+		MMJJ_RS06765	0.41	-1.2
1,249,816	+		MMJJ_RS06765	0.41	+2.4
1,249,817	-		MMJJ_RS06765	0.41	+0.7
1,249,817	-		MMJJ_RS06765	0.41	+2.4
1,249,821	-		MMJJ_RS06765	0.42	-0.5
1,249,822	+		MMJJ_RS06765	0.42	+1.3
1,249,822	+		MMJJ_RS06765	0.42	-3.3
1,249,822	+		MMJJ_RS06765	0.42	-0.8
1,249,823	-		MMJJ_RS06765	0.42	+3.3
1,249,823	-		MMJJ_RS06765	0.42	-2.6
1,249,824	+		MMJJ_RS06765	0.42	-0.8
1,249,826	-		MMJJ_RS06765	0.43	-0.8
1,249,833	+		MMJJ_RS06765	0.43	+1.8
1,249,864	+		MMJJ_RS06765	0.48	-0.7
1,249,900	-		MMJJ_RS06765	0.53	-1.0
1,250,027	-		MMJJ_RS06765	0.70	+1.1
1,250,028	+		MMJJ_RS06765	0.70	+0.4
1,250,031	-		MMJJ_RS06765	0.70	+0.9
1,250,045	+		MMJJ_RS06765	0.72	-1.8
1,250,062	-		MMJJ_RS06765	0.75	-0.1
1,250,063	+		MMJJ_RS06765	0.75	-4.0
1,250,063	+		MMJJ_RS06765	0.75	+1.1
1,250,108	+		MMJJ_RS06765	0.81	+2.6
1,250,126	-		MMJJ_RS06765	0.83	+2.8
1,250,126	-		MMJJ_RS06765	0.83	-2.2
1,250,127	+		MMJJ_RS06765	0.83	-3.4
1,250,161	-		MMJJ_RS06765	0.88	+1.7
1,250,165	-		MMJJ_RS06765	0.88	-0.8
1,250,165	-		MMJJ_RS06765	0.88	-1.3
1,250,166	+		MMJJ_RS06765	0.89	+1.0
1,250,166	+		MMJJ_RS06765	0.89	+1.9
1,250,169	-		MMJJ_RS06765	0.89	-0.2
1,250,170	+		MMJJ_RS06765	0.89	-0.0
1,250,170	+		MMJJ_RS06765	0.89	-3.8
1,250,220	-				-3.1
1,250,220	-				+3.6
1,250,221	+				+1.2
1,250,221	+				+0.9
1,250,223	+				-3.1
1,250,223	+				+2.3
1,250,231	+				+0.4
1,250,231	+				-1.5
1,250,240	+				+1.1
1,250,297	-				+4.3
1,250,297	-				-1.8
1,250,305	-				+1.5
1,250,306	+				+0.1
1,250,306	+				+1.3
1,250,328	+				+1.9
1,250,365	-				-1.8
1,250,365	-				+1.1
1,250,366	+				+2.0
1,250,366	+				+2.5
1,250,366	+				+1.8