Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04325

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04315 and MMJJ_RS04325 are separated by 912 nucleotidesMMJJ_RS04325 and MMJJ_RS04330 overlap by 20 nucleotidesMMJJ_RS04330 and MMJJ_RS04335 are separated by 1 nucleotides MMJJ_RS04315: MMJJ_RS04315 - alpha/beta hydrolase, at 806,343 to 807,047 _RS04315 MMJJ_RS04325: MMJJ_RS04325 - tyrosine-type recombinase/integrase, at 807,960 to 808,928 _RS04325 MMJJ_RS04330: MMJJ_RS04330 - DUF2540 domain-containing protein, at 808,909 to 809,186 _RS04330 MMJJ_RS04335: MMJJ_RS04335 - minichromosome maintenance protein MCM, at 809,188 to 811,212 _RS04335 Position (kb) 807 808 809Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 806.968 kb on - strand, within MMJJ_RS04315at 806.969 kb on + strand, within MMJJ_RS04315at 806.985 kb on - strandat 806.986 kb on + strandat 807.008 kb on + strandat 807.008 kb on + strandat 807.074 kb on + strandat 807.090 kb on + strandat 807.103 kb on - strandat 807.103 kb on - strandat 807.200 kb on + strandat 807.206 kb on + strandat 807.239 kb on + strandat 807.274 kb on - strandat 807.315 kb on - strandat 807.315 kb on - strandat 807.371 kb on + strandat 807.541 kb on + strandat 807.541 kb on + strandat 807.541 kb on + strandat 807.570 kb on - strandat 807.580 kb on - strandat 807.580 kb on - strandat 807.895 kb on - strandat 807.984 kb on - strandat 808.018 kb on - strandat 808.140 kb on + strand, within MMJJ_RS04325at 808.200 kb on - strand, within MMJJ_RS04325at 808.274 kb on + strand, within MMJJ_RS04325at 808.281 kb on + strand, within MMJJ_RS04325at 808.290 kb on - strand, within MMJJ_RS04325at 808.347 kb on + strand, within MMJJ_RS04325at 808.352 kb on - strand, within MMJJ_RS04325at 808.374 kb on + strand, within MMJJ_RS04325at 808.374 kb on + strand, within MMJJ_RS04325at 808.450 kb on + strand, within MMJJ_RS04325at 808.462 kb on + strand, within MMJJ_RS04325at 808.462 kb on + strand, within MMJJ_RS04325at 808.462 kb on + strand, within MMJJ_RS04325at 808.490 kb on - strand, within MMJJ_RS04325at 808.491 kb on + strand, within MMJJ_RS04325at 808.500 kb on - strand, within MMJJ_RS04325at 808.500 kb on - strand, within MMJJ_RS04325at 808.500 kb on - strand, within MMJJ_RS04325at 808.524 kb on - strand, within MMJJ_RS04325at 808.525 kb on + strand, within MMJJ_RS04325at 808.526 kb on - strand, within MMJJ_RS04325at 808.527 kb on + strand, within MMJJ_RS04325at 808.542 kb on - strand, within MMJJ_RS04325at 808.620 kb on + strand, within MMJJ_RS04325at 808.690 kb on - strand, within MMJJ_RS04325at 808.704 kb on - strand, within MMJJ_RS04325at 808.902 kb on - strandat 808.911 kb on + strandat 808.962 kb on - strand, within MMJJ_RS04330at 808.962 kb on - strand, within MMJJ_RS04330at 808.963 kb on + strand, within MMJJ_RS04330at 808.966 kb on + strand, within MMJJ_RS04330at 808.969 kb on - strand, within MMJJ_RS04330at 808.969 kb on - strandat 808.970 kb on + strand, within MMJJ_RS04330at 808.970 kb on + strand, within MMJJ_RS04330at 808.970 kb on + strand, within MMJJ_RS04330at 808.974 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on - strand, within MMJJ_RS04330at 809.098 kb on - strand, within MMJJ_RS04330at 809.098 kb on - strand, within MMJJ_RS04330at 809.098 kb on - strand, within MMJJ_RS04330at 809.098 kb on - strand, within MMJJ_RS04330at 809.099 kb on + strand, within MMJJ_RS04330at 809.099 kb on + strand, within MMJJ_RS04330at 809.125 kb on - strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.129 kb on + strand, within MMJJ_RS04330at 809.159 kb on - strandat 809.160 kb on + strandat 809.167 kb on + strandat 809.167 kb on + strandat 809.261 kb on + strandat 809.267 kb on + strandat 809.287 kb on + strandat 809.330 kb on + strandat 809.362 kb on - strandat 809.362 kb on - strandat 809.364 kb on - strandat 809.367 kb on - strandat 809.373 kb on + strandat 809.384 kb on + strandat 809.468 kb on + strand, within MMJJ_RS04335at 809.486 kb on - strand, within MMJJ_RS04335at 809.486 kb on - strand, within MMJJ_RS04335at 809.487 kb on + strand, within MMJJ_RS04335at 809.487 kb on + strand, within MMJJ_RS04335at 809.518 kb on - strand, within MMJJ_RS04335at 809.608 kb on - strand, within MMJJ_RS04335at 809.619 kb on + strand, within MMJJ_RS04335at 809.632 kb on - strand, within MMJJ_RS04335at 809.640 kb on - strand, within MMJJ_RS04335at 809.679 kb on + strand, within MMJJ_RS04335at 809.679 kb on + strand, within MMJJ_RS04335at 809.688 kb on + strand, within MMJJ_RS04335at 809.717 kb on + strand, within MMJJ_RS04335at 809.774 kb on - strand, within MMJJ_RS04335at 809.797 kb on + strand, within MMJJ_RS04335at 809.873 kb on + strand, within MMJJ_RS04335

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM
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806,968 - MMJJ_RS04315 0.89 +0.4
806,969 + MMJJ_RS04315 0.89 -0.4
806,985 - +0.8
806,986 + +2.4
807,008 + -0.1
807,008 + +0.2
807,074 + +1.7
807,090 + +2.1
807,103 - -2.4
807,103 - -0.2
807,200 + +3.5
807,206 + +2.2
807,239 + +1.8
807,274 - -2.7
807,315 - +0.1
807,315 - +1.2
807,371 + +1.3
807,541 + +3.0
807,541 + -0.7
807,541 + +1.8
807,570 - +1.7
807,580 - +0.8
807,580 - +1.9
807,895 - +1.5
807,984 - -3.2
808,018 - +0.2
808,140 + MMJJ_RS04325 0.19 +1.4
808,200 - MMJJ_RS04325 0.25 -2.5
808,274 + MMJJ_RS04325 0.32 +0.3
808,281 + MMJJ_RS04325 0.33 +3.0
808,290 - MMJJ_RS04325 0.34 +0.4
808,347 + MMJJ_RS04325 0.40 +1.4
808,352 - MMJJ_RS04325 0.40 +0.7
808,374 + MMJJ_RS04325 0.43 +1.0
808,374 + MMJJ_RS04325 0.43 -0.5
808,450 + MMJJ_RS04325 0.51 +0.0
808,462 + MMJJ_RS04325 0.52 +1.2
808,462 + MMJJ_RS04325 0.52 -1.0
808,462 + MMJJ_RS04325 0.52 -2.9
808,490 - MMJJ_RS04325 0.55 +2.4
808,491 + MMJJ_RS04325 0.55 -3.6
808,500 - MMJJ_RS04325 0.56 -0.6
808,500 - MMJJ_RS04325 0.56 -3.5
808,500 - MMJJ_RS04325 0.56 +2.8
808,524 - MMJJ_RS04325 0.58 +0.6
808,525 + MMJJ_RS04325 0.58 -0.8
808,526 - MMJJ_RS04325 0.58 -3.7
808,527 + MMJJ_RS04325 0.59 -2.6
808,542 - MMJJ_RS04325 0.60 -2.8
808,620 + MMJJ_RS04325 0.68 +4.0
808,690 - MMJJ_RS04325 0.75 +4.2
808,704 - MMJJ_RS04325 0.77 -0.7
808,902 - +0.1
808,911 + +0.8
808,962 - MMJJ_RS04330 0.19 -3.0
808,962 - MMJJ_RS04330 0.19 +1.3
808,963 + MMJJ_RS04330 0.19 -2.8
808,966 + MMJJ_RS04330 0.21 -1.6
808,969 - MMJJ_RS04330 0.22 -1.2
808,969 - +2.6
808,970 + MMJJ_RS04330 0.22 -0.3
808,970 + MMJJ_RS04330 0.22 +0.6
808,970 + MMJJ_RS04330 0.22 -1.4
808,974 - MMJJ_RS04330 0.23 -0.0
809,094 - MMJJ_RS04330 0.67 -1.9
809,094 - MMJJ_RS04330 0.67 -3.8
809,094 - MMJJ_RS04330 0.67 -1.1
809,094 - MMJJ_RS04330 0.67 +2.6
809,094 - MMJJ_RS04330 0.67 +2.5
809,094 - MMJJ_RS04330 0.67 -0.7
809,094 - MMJJ_RS04330 0.67 +1.1
809,095 + MMJJ_RS04330 0.67 +0.5
809,095 + MMJJ_RS04330 0.67 -0.8
809,095 + MMJJ_RS04330 0.67 +0.0
809,095 + MMJJ_RS04330 0.67 -2.1
809,095 + MMJJ_RS04330 0.67 -2.9
809,095 + MMJJ_RS04330 0.67 -2.6
809,095 + MMJJ_RS04330 0.67 +0.4
809,095 - MMJJ_RS04330 0.67 +1.6
809,098 - MMJJ_RS04330 0.68 -0.8
809,098 - MMJJ_RS04330 0.68 +1.6
809,098 - MMJJ_RS04330 0.68 -0.9
809,098 - MMJJ_RS04330 0.68 +2.1
809,099 + MMJJ_RS04330 0.68 +0.4
809,099 + MMJJ_RS04330 0.68 -1.6
809,125 - MMJJ_RS04330 0.78 +1.9
809,126 + MMJJ_RS04330 0.78 +2.8
809,126 + MMJJ_RS04330 0.78 -2.2
809,126 + MMJJ_RS04330 0.78 +4.9
809,126 + MMJJ_RS04330 0.78 -1.4
809,126 + MMJJ_RS04330 0.78 +0.8
809,129 + MMJJ_RS04330 0.79 +1.3
809,159 - +0.5
809,160 + -4.0
809,167 + -1.7
809,167 + -0.5
809,261 + +2.2
809,267 + +1.1
809,287 + +0.7
809,330 + -2.7
809,362 - -0.3
809,362 - +0.9
809,364 - -0.7
809,367 - +0.0
809,373 + -1.5
809,384 + -2.8
809,468 + MMJJ_RS04335 0.14 -2.7
809,486 - MMJJ_RS04335 0.15 -2.6
809,486 - MMJJ_RS04335 0.15 -0.7
809,487 + MMJJ_RS04335 0.15 +2.4
809,487 + MMJJ_RS04335 0.15 -0.6
809,518 - MMJJ_RS04335 0.16 +1.4
809,608 - MMJJ_RS04335 0.21 +2.1
809,619 + MMJJ_RS04335 0.21 +1.1
809,632 - MMJJ_RS04335 0.22 -1.1
809,640 - MMJJ_RS04335 0.22 +1.9
809,679 + MMJJ_RS04335 0.24 -3.5
809,679 + MMJJ_RS04335 0.24 -1.2
809,688 + MMJJ_RS04335 0.25 +1.0
809,717 + MMJJ_RS04335 0.26 -0.4
809,774 - MMJJ_RS04335 0.29 +0.9
809,797 + MMJJ_RS04335 0.30 +2.5
809,873 + MMJJ_RS04335 0.34 -3.1

Or see this region's nucleotide sequence