Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00385 and MMJJ_RS00390 are separated by 84 nucleotides MMJJ_RS00390 and MMJJ_RS00395 are separated by 18 nucleotides MMJJ_RS00395 and MMJJ_RS00400 are separated by 42 nucleotides MMJJ_RS00400 and MMJJ_RS00405 are separated by 76 nucleotides MMJJ_RS00405 and MMJJ_RS00410 are separated by 43 nucleotides
MMJJ_RS00385: MMJJ_RS00385 - TIGR00454 family protein, at 73,254 to 73,862
_RS00385
MMJJ_RS00390: MMJJ_RS00390 - proteasome assembly chaperone family protein, at 73,947 to 74,654
_RS00390
MMJJ_RS00395: MMJJ_RS00395 - DUF473 domain-containing protein, at 74,673 to 75,050
_RS00395
MMJJ_RS00400: MMJJ_RS00400 - tautomerase family protein, at 75,093 to 75,287
_RS00400
MMJJ_RS00405: MMJJ_RS00405 - flavodoxin family protein, at 75,364 to 75,945
_RS00405
MMJJ_RS00410: MMJJ_RS00410 - hypothetical protein, at 75,989 to 76,417
_RS00410
Position (kb) 74
75
76 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 73.684 kb on - strand, within MMJJ_RS00385 at 73.685 kb on + strand, within MMJJ_RS00385 at 73.713 kb on - strand, within MMJJ_RS00385 at 73.723 kb on - strand, within MMJJ_RS00385 at 73.725 kb on - strand, within MMJJ_RS00385 at 73.726 kb on + strand, within MMJJ_RS00385 at 73.765 kb on - strand, within MMJJ_RS00385 at 73.886 kb on - strand at 73.887 kb on + strand at 73.887 kb on + strand at 73.893 kb on - strand at 73.893 kb on - strand at 73.893 kb on - strand at 73.893 kb on - strand at 73.893 kb on - strand at 73.893 kb on - strand at 73.893 kb on - strand at 73.893 kb on - strand at 73.893 kb on - strand at 73.894 kb on + strand at 73.894 kb on + strand at 73.895 kb on - strand at 73.897 kb on - strand at 73.898 kb on + strand at 73.947 kb on + strand at 73.953 kb on - strand at 73.953 kb on - strand at 73.954 kb on + strand at 73.980 kb on + strand at 74.070 kb on - strand, within MMJJ_RS00390 at 74.079 kb on - strand, within MMJJ_RS00390 at 74.151 kb on - strand, within MMJJ_RS00390 at 74.168 kb on + strand, within MMJJ_RS00390 at 74.171 kb on + strand, within MMJJ_RS00390 at 74.173 kb on - strand, within MMJJ_RS00390 at 74.188 kb on - strand, within MMJJ_RS00390 at 74.188 kb on - strand, within MMJJ_RS00390 at 74.188 kb on - strand, within MMJJ_RS00390 at 74.188 kb on - strand, within MMJJ_RS00390 at 74.207 kb on + strand, within MMJJ_RS00390 at 74.207 kb on + strand, within MMJJ_RS00390 at 74.209 kb on - strand, within MMJJ_RS00390 at 74.209 kb on - strand, within MMJJ_RS00390 at 74.209 kb on - strand, within MMJJ_RS00390 at 74.209 kb on - strand, within MMJJ_RS00390 at 74.210 kb on + strand, within MMJJ_RS00390 at 74.210 kb on + strand, within MMJJ_RS00390 at 74.216 kb on - strand, within MMJJ_RS00390 at 74.216 kb on - strand, within MMJJ_RS00390 at 74.216 kb on - strand, within MMJJ_RS00390 at 74.216 kb on - strand, within MMJJ_RS00390 at 74.217 kb on + strand, within MMJJ_RS00390 at 74.217 kb on + strand, within MMJJ_RS00390 at 74.217 kb on + strand, within MMJJ_RS00390 at 74.217 kb on + strand, within MMJJ_RS00390 at 74.217 kb on + strand, within MMJJ_RS00390 at 74.225 kb on - strand, within MMJJ_RS00390 at 74.226 kb on + strand, within MMJJ_RS00390 at 74.252 kb on + strand at 74.270 kb on + strand, within MMJJ_RS00390 at 74.385 kb on + strand, within MMJJ_RS00390 at 74.385 kb on + strand, within MMJJ_RS00390 at 74.408 kb on - strand, within MMJJ_RS00390 at 74.409 kb on + strand, within MMJJ_RS00390 at 74.421 kb on + strand, within MMJJ_RS00390 at 74.470 kb on - strand, within MMJJ_RS00390 at 74.496 kb on + strand, within MMJJ_RS00390 at 74.501 kb on + strand, within MMJJ_RS00390 at 74.512 kb on - strand, within MMJJ_RS00390 at 74.642 kb on - strand at 74.642 kb on - strand at 74.642 kb on - strand at 74.643 kb on + strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.646 kb on - strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.647 kb on + strand at 74.648 kb on - strand at 74.649 kb on + strand at 74.653 kb on + strand at 74.653 kb on + strand at 74.653 kb on + strand at 74.765 kb on - strand, within MMJJ_RS00395 at 74.876 kb on - strand, within MMJJ_RS00395 at 74.882 kb on - strand, within MMJJ_RS00395 at 74.882 kb on - strand, within MMJJ_RS00395 at 74.883 kb on + strand, within MMJJ_RS00395 at 74.923 kb on - strand, within MMJJ_RS00395 at 74.923 kb on - strand, within MMJJ_RS00395 at 74.923 kb on - strand, within MMJJ_RS00395 at 74.924 kb on + strand, within MMJJ_RS00395 at 74.932 kb on - strand, within MMJJ_RS00395 at 74.960 kb on + strand, within MMJJ_RS00395 at 75.016 kb on - strand at 75.038 kb on + strand at 75.039 kb on - strand at 75.109 kb on - strand at 75.124 kb on - strand, within MMJJ_RS00400 at 75.181 kb on - strand, within MMJJ_RS00400 at 75.211 kb on - strand, within MMJJ_RS00400 at 75.212 kb on + strand, within MMJJ_RS00400 at 75.215 kb on - strand, within MMJJ_RS00400 at 75.215 kb on - strand, within MMJJ_RS00400 at 75.266 kb on + strand, within MMJJ_RS00400 at 75.266 kb on + strand, within MMJJ_RS00400 at 75.272 kb on - strand at 75.300 kb on - strand at 75.301 kb on + strand at 75.342 kb on - strand at 75.343 kb on + strand at 75.371 kb on - strand at 75.371 kb on - strand at 75.434 kb on - strand, within MMJJ_RS00405 at 75.472 kb on + strand, within MMJJ_RS00405 at 75.494 kb on - strand, within MMJJ_RS00405 at 75.540 kb on - strand, within MMJJ_RS00405 at 75.540 kb on - strand, within MMJJ_RS00405 at 75.541 kb on + strand, within MMJJ_RS00405 at 75.541 kb on + strand, within MMJJ_RS00405 at 75.541 kb on + strand, within MMJJ_RS00405 at 75.548 kb on - strand, within MMJJ_RS00405 at 75.596 kb on - strand, within MMJJ_RS00405 at 75.596 kb on - strand, within MMJJ_RS00405 at 75.616 kb on - strand, within MMJJ_RS00405 at 75.616 kb on - strand, within MMJJ_RS00405 at 75.685 kb on + strand, within MMJJ_RS00405 at 75.754 kb on + strand, within MMJJ_RS00405 at 75.781 kb on + strand, within MMJJ_RS00405 at 75.827 kb on + strand, within MMJJ_RS00405 at 75.941 kb on - strand at 75.942 kb on + strand at 75.943 kb on - strand at 75.946 kb on - strand at 75.947 kb on + strand at 75.966 kb on - strand at 75.976 kb on - strand at 76.026 kb on - strand at 76.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 73,684 - MMJJ_RS00385 0.71 -1.2 73,685 + MMJJ_RS00385 0.71 +0.7 73,713 - MMJJ_RS00385 0.75 +2.4 73,723 - MMJJ_RS00385 0.77 -0.7 73,725 - MMJJ_RS00385 0.77 -0.4 73,726 + MMJJ_RS00385 0.78 -1.9 73,765 - MMJJ_RS00385 0.84 -0.1 73,886 - +0.9 73,887 + +0.3 73,887 + +0.4 73,893 - -3.9 73,893 - +2.4 73,893 - +1.7 73,893 - -0.5 73,893 - -0.0 73,893 - +0.5 73,893 - +2.3 73,893 - -4.7 73,893 - -1.1 73,894 + +0.6 73,894 + +1.9 73,895 - +1.8 73,897 - +0.6 73,898 + +0.3 73,947 + -0.9 73,953 - -0.1 73,953 - -1.7 73,954 + -3.0 73,980 + -2.3 74,070 - MMJJ_RS00390 0.17 +1.7 74,079 - MMJJ_RS00390 0.19 +2.5 74,151 - MMJJ_RS00390 0.29 +2.4 74,168 + MMJJ_RS00390 0.31 +2.6 74,171 + MMJJ_RS00390 0.32 +0.6 74,173 - MMJJ_RS00390 0.32 +0.5 74,188 - MMJJ_RS00390 0.34 -0.6 74,188 - MMJJ_RS00390 0.34 -3.2 74,188 - MMJJ_RS00390 0.34 +0.4 74,188 - MMJJ_RS00390 0.34 -3.0 74,207 + MMJJ_RS00390 0.37 +1.3 74,207 + MMJJ_RS00390 0.37 -4.3 74,209 - MMJJ_RS00390 0.37 +1.4 74,209 - MMJJ_RS00390 0.37 -0.9 74,209 - MMJJ_RS00390 0.37 -0.4 74,209 - MMJJ_RS00390 0.37 +0.1 74,210 + MMJJ_RS00390 0.37 -2.8 74,210 + MMJJ_RS00390 0.37 +0.1 74,216 - MMJJ_RS00390 0.38 -1.8 74,216 - MMJJ_RS00390 0.38 -1.4 74,216 - MMJJ_RS00390 0.38 -0.9 74,216 - MMJJ_RS00390 0.38 -0.1 74,217 + MMJJ_RS00390 0.38 +3.5 74,217 + MMJJ_RS00390 0.38 -1.4 74,217 + MMJJ_RS00390 0.38 -1.2 74,217 + MMJJ_RS00390 0.38 +0.8 74,217 + MMJJ_RS00390 0.38 -0.1 74,225 - MMJJ_RS00390 0.39 -1.1 74,226 + MMJJ_RS00390 0.39 +1.8 74,252 + +0.4 74,270 + MMJJ_RS00390 0.46 +1.8 74,385 + MMJJ_RS00390 0.62 -4.0 74,385 + MMJJ_RS00390 0.62 -2.9 74,408 - MMJJ_RS00390 0.65 +2.3 74,409 + MMJJ_RS00390 0.65 -0.8 74,421 + MMJJ_RS00390 0.67 -3.0 74,470 - MMJJ_RS00390 0.74 -2.7 74,496 + MMJJ_RS00390 0.78 +0.1 74,501 + MMJJ_RS00390 0.78 +0.6 74,512 - MMJJ_RS00390 0.80 -3.1 74,642 - -2.2 74,642 - -0.8 74,642 - -3.2 74,643 + +3.0 74,646 - -0.6 74,646 - +0.5 74,646 - -0.8 74,646 - -3.7 74,646 - -0.4 74,646 - -4.0 74,646 - -0.2 74,646 - -2.4 74,646 - -0.4 74,646 - -4.1 74,646 - +1.7 74,646 - -2.9 74,647 + +2.5 74,647 + -1.3 74,647 + -0.2 74,647 + +0.2 74,647 + +3.4 74,647 + +4.6 74,647 + +2.7 74,647 + +1.0 74,647 + +2.0 74,647 + -2.1 74,647 + +2.1 74,648 - -3.0 74,649 + -2.5 74,653 + -0.9 74,653 + -1.0 74,653 + -1.8 74,765 - MMJJ_RS00395 0.24 -0.3 74,876 - MMJJ_RS00395 0.54 -0.9 74,882 - MMJJ_RS00395 0.55 -1.2 74,882 - MMJJ_RS00395 0.55 -4.6 74,883 + MMJJ_RS00395 0.56 -2.7 74,923 - MMJJ_RS00395 0.66 -2.7 74,923 - MMJJ_RS00395 0.66 -1.4 74,923 - MMJJ_RS00395 0.66 -4.7 74,924 + MMJJ_RS00395 0.66 -1.5 74,932 - MMJJ_RS00395 0.69 -3.7 74,960 + MMJJ_RS00395 0.76 -2.9 75,016 - +1.1 75,038 + -0.4 75,039 - -1.4 75,109 - +2.0 75,124 - MMJJ_RS00400 0.16 -0.4 75,181 - MMJJ_RS00400 0.45 -3.5 75,211 - MMJJ_RS00400 0.61 -3.1 75,212 + MMJJ_RS00400 0.61 -0.7 75,215 - MMJJ_RS00400 0.63 +2.3 75,215 - MMJJ_RS00400 0.63 -1.8 75,266 + MMJJ_RS00400 0.89 +0.8 75,266 + MMJJ_RS00400 0.89 -2.3 75,272 - -2.1 75,300 - +0.4 75,301 + -1.6 75,342 - -1.7 75,343 + -3.6 75,371 - -0.1 75,371 - +3.0 75,434 - MMJJ_RS00405 0.12 +1.9 75,472 + MMJJ_RS00405 0.19 +1.9 75,494 - MMJJ_RS00405 0.22 +1.1 75,540 - MMJJ_RS00405 0.30 -1.6 75,540 - MMJJ_RS00405 0.30 +2.4 75,541 + MMJJ_RS00405 0.30 +0.2 75,541 + MMJJ_RS00405 0.30 +0.1 75,541 + MMJJ_RS00405 0.30 +3.7 75,548 - MMJJ_RS00405 0.32 +1.9 75,596 - MMJJ_RS00405 0.40 +1.0 75,596 - MMJJ_RS00405 0.40 +1.3 75,616 - MMJJ_RS00405 0.43 +1.7 75,616 - MMJJ_RS00405 0.43 +1.8 75,685 + MMJJ_RS00405 0.55 -2.4 75,754 + MMJJ_RS00405 0.67 +2.2 75,781 + MMJJ_RS00405 0.72 +1.9 75,827 + MMJJ_RS00405 0.80 +0.8 75,941 - +0.5 75,942 + -0.4 75,943 - -1.5 75,946 - +1.8 75,947 + +0.9 75,966 - +0.7 75,976 - +4.9 76,026 - -2.1 76,030 + -1.3
Or see this region's nucleotide sequence