Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04690 and MMJJ_RS04695 are separated by 23 nucleotides MMJJ_RS04695 and MMJJ_RS04700 are separated by 635 nucleotides
MMJJ_RS04690: MMJJ_RS04690 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 877,391 to 878,518
_RS04690
MMJJ_RS04695: MMJJ_RS04695 - formate dehydrogenase subunit alpha, at 878,542 to 880,572
_RS04695
MMJJ_RS04700: MMJJ_RS04700 - deoxyhypusine synthase, at 881,208 to 882,215
_RS04700
Position (kb) 878
879
880
881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.608 kb on - strand, within MMJJ_RS04690 at 877.608 kb on - strand, within MMJJ_RS04690 at 877.619 kb on - strand, within MMJJ_RS04690 at 877.620 kb on + strand, within MMJJ_RS04690 at 877.620 kb on + strand, within MMJJ_RS04690 at 877.643 kb on - strand, within MMJJ_RS04690 at 877.643 kb on - strand, within MMJJ_RS04690 at 877.644 kb on + strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.653 kb on + strand, within MMJJ_RS04690 at 877.653 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.763 kb on + strand, within MMJJ_RS04690 at 877.763 kb on + strand, within MMJJ_RS04690 at 877.827 kb on + strand, within MMJJ_RS04690 at 877.827 kb on + strand, within MMJJ_RS04690 at 877.856 kb on - strand, within MMJJ_RS04690 at 878.040 kb on + strand, within MMJJ_RS04690 at 878.049 kb on + strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.096 kb on - strand, within MMJJ_RS04690 at 878.097 kb on + strand, within MMJJ_RS04690 at 878.104 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.174 kb on - strand, within MMJJ_RS04690 at 878.174 kb on - strand, within MMJJ_RS04690 at 878.175 kb on + strand, within MMJJ_RS04690 at 878.175 kb on + strand, within MMJJ_RS04690 at 878.180 kb on + strand, within MMJJ_RS04690 at 878.214 kb on + strand, within MMJJ_RS04690 at 878.216 kb on - strand, within MMJJ_RS04690 at 878.246 kb on - strand, within MMJJ_RS04690 at 878.246 kb on - strand, within MMJJ_RS04690 at 878.279 kb on - strand, within MMJJ_RS04690 at 878.478 kb on + strand at 878.483 kb on + strand at 878.508 kb on - strand at 878.509 kb on + strand at 878.536 kb on - strand at 878.638 kb on - strand at 878.639 kb on + strand at 878.657 kb on - strand at 878.657 kb on - strand at 878.658 kb on + strand at 878.658 kb on + strand at 878.658 kb on + strand at 878.658 kb on + strand at 878.663 kb on + strand at 878.704 kb on - strand at 878.704 kb on - strand at 878.705 kb on + strand at 878.705 kb on + strand at 878.705 kb on + strand at 878.731 kb on + strand at 878.749 kb on - strand, within MMJJ_RS04695 at 878.780 kb on + strand, within MMJJ_RS04695 at 878.811 kb on - strand, within MMJJ_RS04695 at 878.849 kb on - strand, within MMJJ_RS04695 at 878.849 kb on - strand, within MMJJ_RS04695 at 878.850 kb on + strand, within MMJJ_RS04695 at 878.850 kb on + strand, within MMJJ_RS04695 at 878.860 kb on - strand, within MMJJ_RS04695 at 878.861 kb on + strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.875 kb on + strand, within MMJJ_RS04695 at 878.875 kb on + strand, within MMJJ_RS04695 at 878.875 kb on + strand, within MMJJ_RS04695 at 878.878 kb on - strand, within MMJJ_RS04695 at 878.878 kb on - strand, within MMJJ_RS04695 at 878.878 kb on - strand, within MMJJ_RS04695 at 878.878 kb on - strand, within MMJJ_RS04695 at 878.879 kb on + strand, within MMJJ_RS04695 at 878.889 kb on + strand, within MMJJ_RS04695 at 878.919 kb on - strand, within MMJJ_RS04695 at 878.920 kb on + strand, within MMJJ_RS04695 at 878.934 kb on - strand, within MMJJ_RS04695 at 879.010 kb on + strand, within MMJJ_RS04695 at 879.010 kb on + strand, within MMJJ_RS04695 at 879.062 kb on - strand, within MMJJ_RS04695 at 879.062 kb on - strand, within MMJJ_RS04695 at 879.072 kb on - strand, within MMJJ_RS04695 at 879.094 kb on - strand, within MMJJ_RS04695 at 879.163 kb on + strand, within MMJJ_RS04695 at 879.163 kb on + strand, within MMJJ_RS04695 at 879.277 kb on - strand, within MMJJ_RS04695 at 879.277 kb on - strand, within MMJJ_RS04695 at 879.326 kb on + strand, within MMJJ_RS04695 at 879.337 kb on - strand, within MMJJ_RS04695 at 879.367 kb on - strand, within MMJJ_RS04695 at 879.367 kb on - strand, within MMJJ_RS04695 at 879.367 kb on - strand, within MMJJ_RS04695 at 879.368 kb on + strand, within MMJJ_RS04695 at 879.368 kb on + strand, within MMJJ_RS04695 at 879.368 kb on + strand, within MMJJ_RS04695 at 879.370 kb on + strand, within MMJJ_RS04695 at 879.414 kb on + strand, within MMJJ_RS04695 at 879.440 kb on + strand, within MMJJ_RS04695 at 879.457 kb on - strand, within MMJJ_RS04695 at 879.475 kb on - strand, within MMJJ_RS04695 at 879.476 kb on + strand, within MMJJ_RS04695 at 879.545 kb on + strand, within MMJJ_RS04695 at 879.666 kb on - strand, within MMJJ_RS04695 at 879.688 kb on + strand, within MMJJ_RS04695 at 879.776 kb on + strand, within MMJJ_RS04695 at 879.809 kb on - strand, within MMJJ_RS04695 at 879.810 kb on + strand, within MMJJ_RS04695 at 879.821 kb on + strand, within MMJJ_RS04695 at 879.821 kb on + strand, within MMJJ_RS04695 at 879.830 kb on + strand, within MMJJ_RS04695 at 879.858 kb on - strand, within MMJJ_RS04695 at 879.897 kb on - strand, within MMJJ_RS04695 at 879.904 kb on + strand, within MMJJ_RS04695 at 879.907 kb on + strand, within MMJJ_RS04695 at 879.907 kb on + strand, within MMJJ_RS04695 at 879.907 kb on + strand, within MMJJ_RS04695 at 879.909 kb on - strand, within MMJJ_RS04695 at 879.940 kb on + strand, within MMJJ_RS04695 at 879.940 kb on + strand, within MMJJ_RS04695 at 879.947 kb on + strand, within MMJJ_RS04695 at 880.006 kb on + strand, within MMJJ_RS04695 at 880.028 kb on + strand, within MMJJ_RS04695 at 880.033 kb on + strand, within MMJJ_RS04695 at 880.033 kb on + strand, within MMJJ_RS04695 at 880.065 kb on - strand, within MMJJ_RS04695 at 880.065 kb on - strand, within MMJJ_RS04695 at 880.076 kb on - strand, within MMJJ_RS04695 at 880.077 kb on + strand, within MMJJ_RS04695 at 880.081 kb on + strand, within MMJJ_RS04695 at 880.087 kb on - strand, within MMJJ_RS04695 at 880.087 kb on - strand, within MMJJ_RS04695 at 880.088 kb on + strand, within MMJJ_RS04695 at 880.156 kb on - strand, within MMJJ_RS04695 at 880.157 kb on + strand, within MMJJ_RS04695 at 880.157 kb on + strand, within MMJJ_RS04695 at 880.214 kb on + strand, within MMJJ_RS04695 at 880.241 kb on - strand, within MMJJ_RS04695 at 880.241 kb on - strand, within MMJJ_RS04695 at 880.241 kb on - strand, within MMJJ_RS04695 at 880.242 kb on + strand, within MMJJ_RS04695 at 880.282 kb on - strand, within MMJJ_RS04695 at 880.283 kb on + strand, within MMJJ_RS04695 at 880.299 kb on + strand, within MMJJ_RS04695 at 880.307 kb on + strand, within MMJJ_RS04695 at 880.321 kb on + strand, within MMJJ_RS04695 at 880.328 kb on + strand, within MMJJ_RS04695 at 880.344 kb on - strand, within MMJJ_RS04695 at 880.345 kb on + strand, within MMJJ_RS04695 at 880.422 kb on + strand at 880.425 kb on - strand at 880.426 kb on + strand at 880.433 kb on + strand at 880.434 kb on - strand at 880.483 kb on - strand at 880.484 kb on + strand at 880.486 kb on - strand at 880.487 kb on + strand at 880.500 kb on - strand at 880.505 kb on + strand at 880.560 kb on - strand at 880.573 kb on - strand at 880.597 kb on - strand at 880.641 kb on + strand at 880.687 kb on - strand at 880.711 kb on + strand at 880.711 kb on + strand at 880.773 kb on - strand at 880.875 kb on + strand at 880.887 kb on - strand at 880.974 kb on + strand at 881.024 kb on - strand at 881.073 kb on + strand at 881.123 kb on + strand at 881.144 kb on + strand at 881.192 kb on - strand at 881.193 kb on + strand at 881.210 kb on + strand at 881.213 kb on - strand at 881.360 kb on - strand, within MMJJ_RS04700 at 881.360 kb on - strand, within MMJJ_RS04700 at 881.361 kb on + strand, within MMJJ_RS04700 at 881.361 kb on + strand, within MMJJ_RS04700 at 881.365 kb on - strand, within MMJJ_RS04700 at 881.406 kb on - strand, within MMJJ_RS04700 at 881.410 kb on + strand at 881.508 kb on - strand, within MMJJ_RS04700
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM remove 877,590 + MMJJ_RS04690 0.18 -1.7 877,590 + MMJJ_RS04690 0.18 +1.8 877,590 + MMJJ_RS04690 0.18 +0.7 877,608 - MMJJ_RS04690 0.19 -1.1 877,608 - MMJJ_RS04690 0.19 +0.5 877,619 - MMJJ_RS04690 0.20 +0.3 877,620 + MMJJ_RS04690 0.20 +0.0 877,620 + MMJJ_RS04690 0.20 -0.4 877,643 - MMJJ_RS04690 0.22 +0.5 877,643 - MMJJ_RS04690 0.22 -1.5 877,644 + MMJJ_RS04690 0.22 +1.1 877,652 - MMJJ_RS04690 0.23 +0.5 877,652 - MMJJ_RS04690 0.23 +3.7 877,652 - MMJJ_RS04690 0.23 +1.0 877,652 - MMJJ_RS04690 0.23 +6.1 877,652 - MMJJ_RS04690 0.23 -4.1 877,652 - MMJJ_RS04690 0.23 -1.1 877,653 + MMJJ_RS04690 0.23 +1.6 877,653 + MMJJ_RS04690 0.23 -3.4 877,661 + MMJJ_RS04690 0.24 -3.9 877,661 + MMJJ_RS04690 0.24 -0.8 877,661 + MMJJ_RS04690 0.24 -3.8 877,763 + MMJJ_RS04690 0.33 -2.3 877,763 + MMJJ_RS04690 0.33 -2.2 877,827 + MMJJ_RS04690 0.39 -2.6 877,827 + MMJJ_RS04690 0.39 -2.3 877,856 - MMJJ_RS04690 0.41 +2.0 878,040 + MMJJ_RS04690 0.58 -2.4 878,049 + MMJJ_RS04690 0.58 -1.7 878,081 - MMJJ_RS04690 0.61 +0.5 878,081 - MMJJ_RS04690 0.61 -2.8 878,081 - MMJJ_RS04690 0.61 -0.9 878,096 - MMJJ_RS04690 0.62 -0.3 878,097 + MMJJ_RS04690 0.63 -0.9 878,104 + MMJJ_RS04690 0.63 -0.2 878,171 + MMJJ_RS04690 0.69 +1.2 878,171 + MMJJ_RS04690 0.69 +0.6 878,171 + MMJJ_RS04690 0.69 -0.5 878,174 - MMJJ_RS04690 0.69 -1.1 878,174 - MMJJ_RS04690 0.69 +0.7 878,175 + MMJJ_RS04690 0.70 +0.9 878,175 + MMJJ_RS04690 0.70 +0.7 878,180 + MMJJ_RS04690 0.70 -2.6 878,214 + MMJJ_RS04690 0.73 +0.0 878,216 - MMJJ_RS04690 0.73 +3.0 878,246 - MMJJ_RS04690 0.76 -0.3 878,246 - MMJJ_RS04690 0.76 -3.5 878,279 - MMJJ_RS04690 0.79 -2.0 878,478 + -1.3 878,483 + -2.6 878,508 - -3.4 878,509 + +1.1 878,536 - +0.3 878,638 - -1.0 878,639 + +2.0 878,657 - +1.6 878,657 - -1.4 878,658 + -1.2 878,658 + -0.4 878,658 + +1.4 878,658 + +3.8 878,663 + +0.7 878,704 - +0.8 878,704 - +2.0 878,705 + -3.7 878,705 + +2.0 878,705 + -3.2 878,731 + -1.0 878,749 - MMJJ_RS04695 0.10 +2.2 878,780 + MMJJ_RS04695 0.12 +1.3 878,811 - MMJJ_RS04695 0.13 -2.3 878,849 - MMJJ_RS04695 0.15 -2.2 878,849 - MMJJ_RS04695 0.15 -3.3 878,850 + MMJJ_RS04695 0.15 +3.0 878,850 + MMJJ_RS04695 0.15 +1.5 878,860 - MMJJ_RS04695 0.16 -0.8 878,861 + MMJJ_RS04695 0.16 -4.7 878,874 - MMJJ_RS04695 0.16 +2.2 878,874 - MMJJ_RS04695 0.16 +1.6 878,874 - MMJJ_RS04695 0.16 -2.4 878,874 - MMJJ_RS04695 0.16 +2.3 878,874 - MMJJ_RS04695 0.16 -4.1 878,874 - MMJJ_RS04695 0.16 -1.4 878,875 + MMJJ_RS04695 0.16 +1.6 878,875 + MMJJ_RS04695 0.16 +0.1 878,875 + MMJJ_RS04695 0.16 +2.1 878,878 - MMJJ_RS04695 0.17 -1.7 878,878 - MMJJ_RS04695 0.17 -1.3 878,878 - MMJJ_RS04695 0.17 -0.8 878,878 - MMJJ_RS04695 0.17 +1.6 878,879 + MMJJ_RS04695 0.17 +1.3 878,889 + MMJJ_RS04695 0.17 -0.0 878,919 - MMJJ_RS04695 0.19 +0.3 878,920 + MMJJ_RS04695 0.19 -1.0 878,934 - MMJJ_RS04695 0.19 +0.2 879,010 + MMJJ_RS04695 0.23 +1.0 879,010 + MMJJ_RS04695 0.23 -2.4 879,062 - MMJJ_RS04695 0.26 +0.2 879,062 - MMJJ_RS04695 0.26 -3.1 879,072 - MMJJ_RS04695 0.26 -3.6 879,094 - MMJJ_RS04695 0.27 +0.2 879,163 + MMJJ_RS04695 0.31 +1.4 879,163 + MMJJ_RS04695 0.31 +0.3 879,277 - MMJJ_RS04695 0.36 -2.5 879,277 - MMJJ_RS04695 0.36 -3.7 879,326 + MMJJ_RS04695 0.39 +3.7 879,337 - MMJJ_RS04695 0.39 +0.8 879,367 - MMJJ_RS04695 0.41 -0.7 879,367 - MMJJ_RS04695 0.41 -1.1 879,367 - MMJJ_RS04695 0.41 -1.0 879,368 + MMJJ_RS04695 0.41 -0.2 879,368 + MMJJ_RS04695 0.41 -1.0 879,368 + MMJJ_RS04695 0.41 -2.3 879,370 + MMJJ_RS04695 0.41 -0.7 879,414 + MMJJ_RS04695 0.43 -0.4 879,440 + MMJJ_RS04695 0.44 -0.2 879,457 - MMJJ_RS04695 0.45 +0.7 879,475 - MMJJ_RS04695 0.46 -1.1 879,476 + MMJJ_RS04695 0.46 -0.8 879,545 + MMJJ_RS04695 0.49 -2.7 879,666 - MMJJ_RS04695 0.55 -1.8 879,688 + MMJJ_RS04695 0.56 -2.6 879,776 + MMJJ_RS04695 0.61 -1.1 879,809 - MMJJ_RS04695 0.62 -1.7 879,810 + MMJJ_RS04695 0.62 +1.5 879,821 + MMJJ_RS04695 0.63 -0.8 879,821 + MMJJ_RS04695 0.63 +0.5 879,830 + MMJJ_RS04695 0.63 +0.4 879,858 - MMJJ_RS04695 0.65 +1.8 879,897 - MMJJ_RS04695 0.67 -0.6 879,904 + MMJJ_RS04695 0.67 +0.7 879,907 + MMJJ_RS04695 0.67 -0.6 879,907 + MMJJ_RS04695 0.67 +1.8 879,907 + MMJJ_RS04695 0.67 -2.7 879,909 - MMJJ_RS04695 0.67 +0.3 879,940 + MMJJ_RS04695 0.69 +0.0 879,940 + MMJJ_RS04695 0.69 -0.4 879,947 + MMJJ_RS04695 0.69 -1.5 880,006 + MMJJ_RS04695 0.72 +1.6 880,028 + MMJJ_RS04695 0.73 +0.6 880,033 + MMJJ_RS04695 0.73 +1.1 880,033 + MMJJ_RS04695 0.73 +2.2 880,065 - MMJJ_RS04695 0.75 -2.7 880,065 - MMJJ_RS04695 0.75 +1.1 880,076 - MMJJ_RS04695 0.76 -1.5 880,077 + MMJJ_RS04695 0.76 -3.9 880,081 + MMJJ_RS04695 0.76 -0.1 880,087 - MMJJ_RS04695 0.76 -2.9 880,087 - MMJJ_RS04695 0.76 +0.9 880,088 + MMJJ_RS04695 0.76 -2.7 880,156 - MMJJ_RS04695 0.79 -0.3 880,157 + MMJJ_RS04695 0.80 +0.7 880,157 + MMJJ_RS04695 0.80 +1.2 880,214 + MMJJ_RS04695 0.82 -0.8 880,241 - MMJJ_RS04695 0.84 -2.8 880,241 - MMJJ_RS04695 0.84 -4.0 880,241 - MMJJ_RS04695 0.84 +0.0 880,242 + MMJJ_RS04695 0.84 +0.3 880,282 - MMJJ_RS04695 0.86 +3.2 880,283 + MMJJ_RS04695 0.86 +2.4 880,299 + MMJJ_RS04695 0.87 -0.5 880,307 + MMJJ_RS04695 0.87 -1.5 880,321 + MMJJ_RS04695 0.88 -0.2 880,328 + MMJJ_RS04695 0.88 +1.7 880,344 - MMJJ_RS04695 0.89 -3.7 880,345 + MMJJ_RS04695 0.89 +0.0 880,422 + +3.8 880,425 - -1.3 880,426 + +2.0 880,433 + -1.0 880,434 - +2.4 880,483 - -1.5 880,484 + +1.8 880,486 - +1.9 880,487 + +2.1 880,500 - -3.2 880,505 + +1.9 880,560 - -4.4 880,573 - -1.1 880,597 - +1.7 880,641 + -0.4 880,687 - +1.1 880,711 + +1.5 880,711 + -2.5 880,773 - -1.0 880,875 + -2.8 880,887 - +2.1 880,974 + -1.8 881,024 - -2.0 881,073 + +1.0 881,123 + +1.6 881,144 + -0.2 881,192 - +0.9 881,193 + +0.0 881,210 + -0.2 881,213 - -1.0 881,360 - MMJJ_RS04700 0.15 -1.8 881,360 - MMJJ_RS04700 0.15 +1.6 881,361 + MMJJ_RS04700 0.15 -0.6 881,361 + MMJJ_RS04700 0.15 +0.3 881,365 - MMJJ_RS04700 0.16 -4.0 881,406 - MMJJ_RS04700 0.20 +0.3 881,410 + +1.0 881,508 - MMJJ_RS04700 0.30 +0.6
Or see this region's nucleotide sequence