Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02140

Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02130 and MMJJ_RS02135 are separated by 1 nucleotidesMMJJ_RS02135 and MMJJ_RS02140 overlap by 4 nucleotidesMMJJ_RS02140 and MMJJ_RS02145 are separated by 43 nucleotidesMMJJ_RS02145 and MMJJ_RS02150 are separated by 123 nucleotides MMJJ_RS02130: MMJJ_RS02130 - UPF0146 family protein, at 405,760 to 406,173 _RS02130 MMJJ_RS02135: MMJJ_RS02135 - TatD family hydrolase, at 406,175 to 407,017 _RS02135 MMJJ_RS02140: MMJJ_RS02140 - preflagellin peptidase FlaK, at 407,014 to 407,706 _RS02140 MMJJ_RS02145: MMJJ_RS02145 - class I SAM-dependent methyltransferase, at 407,750 to 408,352 _RS02145 MMJJ_RS02150: MMJJ_RS02150 - ornithine carbamoyltransferase, at 408,476 to 409,390 _RS02150 Position (kb) 407 408Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 406.172 kb on + strandat 406.231 kb on + strandat 406.294 kb on - strand, within MMJJ_RS02135at 406.295 kb on + strand, within MMJJ_RS02135at 406.304 kb on + strand, within MMJJ_RS02135at 406.315 kb on - strand, within MMJJ_RS02135at 406.315 kb on - strand, within MMJJ_RS02135at 406.316 kb on + strand, within MMJJ_RS02135at 406.357 kb on + strand, within MMJJ_RS02135at 406.369 kb on + strand, within MMJJ_RS02135at 406.476 kb on - strand, within MMJJ_RS02135at 406.476 kb on - strand, within MMJJ_RS02135at 406.476 kb on - strand, within MMJJ_RS02135at 406.477 kb on + strand, within MMJJ_RS02135at 406.477 kb on + strand, within MMJJ_RS02135at 406.477 kb on + strand, within MMJJ_RS02135at 406.477 kb on + strand, within MMJJ_RS02135at 406.501 kb on - strand, within MMJJ_RS02135at 406.501 kb on - strand, within MMJJ_RS02135at 406.510 kb on + strand, within MMJJ_RS02135at 406.510 kb on + strand, within MMJJ_RS02135at 406.575 kb on - strand, within MMJJ_RS02135at 406.605 kb on + strand, within MMJJ_RS02135at 406.628 kb on + strand, within MMJJ_RS02135at 406.758 kb on - strand, within MMJJ_RS02135at 406.856 kb on - strand, within MMJJ_RS02135at 407.039 kb on + strandat 407.039 kb on + strandat 407.065 kb on - strandat 407.066 kb on + strandat 407.066 kb on + strandat 407.069 kb on - strandat 407.069 kb on - strandat 407.069 kb on - strandat 407.069 kb on - strandat 407.070 kb on + strandat 407.070 kb on + strandat 407.070 kb on + strandat 407.070 kb on + strandat 407.074 kb on - strandat 407.075 kb on + strandat 407.080 kb on - strandat 407.091 kb on - strand, within MMJJ_RS02140at 407.110 kb on + strand, within MMJJ_RS02140at 407.117 kb on + strand, within MMJJ_RS02140at 407.135 kb on - strand, within MMJJ_RS02140at 407.136 kb on + strand, within MMJJ_RS02140at 407.381 kb on - strand, within MMJJ_RS02140at 407.382 kb on + strand, within MMJJ_RS02140at 407.414 kb on - strand, within MMJJ_RS02140at 407.414 kb on - strand, within MMJJ_RS02140at 407.414 kb on - strand, within MMJJ_RS02140at 407.414 kb on - strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.492 kb on + strand, within MMJJ_RS02140at 407.502 kb on - strand, within MMJJ_RS02140at 407.504 kb on - strand, within MMJJ_RS02140at 407.627 kb on - strand, within MMJJ_RS02140at 407.628 kb on + strand, within MMJJ_RS02140at 407.628 kb on + strand, within MMJJ_RS02140at 407.668 kb on - strandat 407.684 kb on + strandat 407.697 kb on + strandat 407.697 kb on + strandat 407.725 kb on - strandat 407.730 kb on + strandat 407.730 kb on + strandat 407.730 kb on + strandat 407.741 kb on + strandat 407.799 kb on + strandat 407.804 kb on + strandat 407.837 kb on + strand, within MMJJ_RS02145at 407.838 kb on - strand, within MMJJ_RS02145at 407.843 kb on + strand, within MMJJ_RS02145at 407.903 kb on - strand, within MMJJ_RS02145at 407.940 kb on + strand, within MMJJ_RS02145at 407.958 kb on + strand, within MMJJ_RS02145at 407.974 kb on - strand, within MMJJ_RS02145at 407.979 kb on + strand, within MMJJ_RS02145at 407.979 kb on + strand, within MMJJ_RS02145at 408.000 kb on + strand, within MMJJ_RS02145at 408.012 kb on + strand, within MMJJ_RS02145at 408.012 kb on + strand, within MMJJ_RS02145at 408.057 kb on + strand, within MMJJ_RS02145at 408.057 kb on + strand, within MMJJ_RS02145at 408.099 kb on + strand, within MMJJ_RS02145at 408.122 kb on + strand, within MMJJ_RS02145at 408.142 kb on - strand, within MMJJ_RS02145at 408.142 kb on - strand, within MMJJ_RS02145at 408.143 kb on + strand, within MMJJ_RS02145at 408.146 kb on - strand, within MMJJ_RS02145at 408.147 kb on + strand, within MMJJ_RS02145at 408.147 kb on + strand, within MMJJ_RS02145at 408.147 kb on + strand, within MMJJ_RS02145at 408.173 kb on - strand, within MMJJ_RS02145at 408.173 kb on - strand, within MMJJ_RS02145at 408.209 kb on - strand, within MMJJ_RS02145at 408.215 kb on - strand, within MMJJ_RS02145at 408.215 kb on - strand, within MMJJ_RS02145at 408.216 kb on + strand, within MMJJ_RS02145at 408.219 kb on + strand, within MMJJ_RS02145at 408.219 kb on + strand, within MMJJ_RS02145at 408.259 kb on - strand, within MMJJ_RS02145at 408.304 kb on - strandat 408.304 kb on - strandat 408.307 kb on - strandat 408.381 kb on - strandat 408.382 kb on + strandat 408.385 kb on - strandat 408.390 kb on + strandat 408.390 kb on + strandat 408.395 kb on - strandat 408.395 kb on - strandat 408.395 kb on - strandat 408.396 kb on + strandat 408.404 kb on - strandat 408.405 kb on + strandat 408.407 kb on + strandat 408.407 kb on + strandat 408.413 kb on - strandat 408.413 kb on - strandat 408.413 kb on - strandat 408.413 kb on - strandat 408.413 kb on - strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM
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406,172 + +2.8
406,231 + +1.4
406,294 - MMJJ_RS02135 0.14 -0.1
406,295 + MMJJ_RS02135 0.14 -0.3
406,304 + MMJJ_RS02135 0.15 +0.4
406,315 - MMJJ_RS02135 0.17 -1.5
406,315 - MMJJ_RS02135 0.17 +4.5
406,316 + MMJJ_RS02135 0.17 -2.3
406,357 + MMJJ_RS02135 0.22 +2.4
406,369 + MMJJ_RS02135 0.23 -0.7
406,476 - MMJJ_RS02135 0.36 -3.4
406,476 - MMJJ_RS02135 0.36 +1.3
406,476 - MMJJ_RS02135 0.36 +1.0
406,477 + MMJJ_RS02135 0.36 -1.4
406,477 + MMJJ_RS02135 0.36 -0.5
406,477 + MMJJ_RS02135 0.36 -2.4
406,477 + MMJJ_RS02135 0.36 +0.2
406,501 - MMJJ_RS02135 0.39 -0.1
406,501 - MMJJ_RS02135 0.39 +2.0
406,510 + MMJJ_RS02135 0.40 +0.8
406,510 + MMJJ_RS02135 0.40 -4.2
406,575 - MMJJ_RS02135 0.47 -0.6
406,605 + MMJJ_RS02135 0.51 -3.8
406,628 + MMJJ_RS02135 0.54 -0.0
406,758 - MMJJ_RS02135 0.69 -0.3
406,856 - MMJJ_RS02135 0.81 +0.3
407,039 + -0.8
407,039 + +2.4
407,065 - +3.4
407,066 + -3.6
407,066 + -3.7
407,069 - -1.2
407,069 - +0.4
407,069 - -2.9
407,069 - -1.4
407,070 + -0.0
407,070 + -0.7
407,070 + -2.1
407,070 + +0.2
407,074 - -2.4
407,075 + +0.6
407,080 - +1.7
407,091 - MMJJ_RS02140 0.11 -1.4
407,110 + MMJJ_RS02140 0.14 +1.0
407,117 + MMJJ_RS02140 0.15 +2.2
407,135 - MMJJ_RS02140 0.17 +1.1
407,136 + MMJJ_RS02140 0.18 -2.2
407,381 - MMJJ_RS02140 0.53 -0.2
407,382 + MMJJ_RS02140 0.53 +1.0
407,414 - MMJJ_RS02140 0.58 -2.6
407,414 - MMJJ_RS02140 0.58 -0.1
407,414 - MMJJ_RS02140 0.58 -2.9
407,414 - MMJJ_RS02140 0.58 +0.1
407,415 + MMJJ_RS02140 0.58 +1.6
407,415 + MMJJ_RS02140 0.58 -1.9
407,415 + MMJJ_RS02140 0.58 +2.1
407,415 + MMJJ_RS02140 0.58 -1.0
407,415 + MMJJ_RS02140 0.58 -0.0
407,415 + MMJJ_RS02140 0.58 +1.0
407,492 + MMJJ_RS02140 0.69 -1.8
407,502 - MMJJ_RS02140 0.70 +1.2
407,504 - MMJJ_RS02140 0.71 -3.3
407,627 - MMJJ_RS02140 0.88 +1.0
407,628 + MMJJ_RS02140 0.89 +0.5
407,628 + MMJJ_RS02140 0.89 +1.7
407,668 - -0.4
407,684 + +0.8
407,697 + +0.8
407,697 + +1.5
407,725 - +1.5
407,730 + -0.3
407,730 + +0.6
407,730 + -0.9
407,741 + -0.1
407,799 + +2.1
407,804 + +2.1
407,837 + MMJJ_RS02145 0.14 -0.0
407,838 - MMJJ_RS02145 0.15 -1.1
407,843 + MMJJ_RS02145 0.15 +1.5
407,903 - MMJJ_RS02145 0.25 +0.6
407,940 + MMJJ_RS02145 0.32 +0.7
407,958 + MMJJ_RS02145 0.34 +2.6
407,974 - MMJJ_RS02145 0.37 -1.4
407,979 + MMJJ_RS02145 0.38 +0.0
407,979 + MMJJ_RS02145 0.38 +0.4
408,000 + MMJJ_RS02145 0.41 -0.2
408,012 + MMJJ_RS02145 0.43 -2.6
408,012 + MMJJ_RS02145 0.43 +1.2
408,057 + MMJJ_RS02145 0.51 -1.4
408,057 + MMJJ_RS02145 0.51 +1.8
408,099 + MMJJ_RS02145 0.58 +0.6
408,122 + MMJJ_RS02145 0.62 +0.3
408,142 - MMJJ_RS02145 0.65 -0.4
408,142 - MMJJ_RS02145 0.65 -3.3
408,143 + MMJJ_RS02145 0.65 +2.2
408,146 - MMJJ_RS02145 0.66 +0.3
408,147 + MMJJ_RS02145 0.66 -2.0
408,147 + MMJJ_RS02145 0.66 -0.3
408,147 + MMJJ_RS02145 0.66 +4.0
408,173 - MMJJ_RS02145 0.70 +2.5
408,173 - MMJJ_RS02145 0.70 +2.2
408,209 - MMJJ_RS02145 0.76 +0.1
408,215 - MMJJ_RS02145 0.77 +0.1
408,215 - MMJJ_RS02145 0.77 -0.9
408,216 + MMJJ_RS02145 0.77 +1.6
408,219 + MMJJ_RS02145 0.78 -1.3
408,219 + MMJJ_RS02145 0.78 +0.5
408,259 - MMJJ_RS02145 0.84 +1.1
408,304 - +1.5
408,304 - -0.9
408,307 - +0.2
408,381 - +3.9
408,382 + -1.0
408,385 - -0.3
408,390 + -1.9
408,390 + +2.0
408,395 - +0.0
408,395 - -3.9
408,395 - -0.1
408,396 + +0.2
408,404 - -2.2
408,405 + -0.3
408,407 + -1.5
408,407 + -0.8
408,413 - -3.1
408,413 - +0.6
408,413 - -1.8
408,413 - -0.7
408,413 - +1.0
408,414 + +1.6
408,414 + -2.3
408,414 + -2.5
408,414 + -2.1
408,414 + -3.6
408,414 + -0.0
408,414 + +0.8
408,414 + -1.7

Or see this region's nucleotide sequence