Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01710 and MMJJ_RS01715 are separated by 109 nucleotides MMJJ_RS01715 and MMJJ_RS01720 are separated by 39 nucleotides
MMJJ_RS01710: MMJJ_RS01710 - beta-propeller domain-containing protein, at 329,712 to 331,949
_RS01710
MMJJ_RS01715: MMJJ_RS01715 - winged helix-turn-helix domain-containing protein, at 332,059 to 332,604
_RS01715
MMJJ_RS01720: MMJJ_RS01720 - hypothetical protein, at 332,644 to 333,876
_RS01720
Position (kb) 332
333 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 331.116 kb on + strand, within MMJJ_RS01710 at 331.116 kb on + strand, within MMJJ_RS01710 at 331.132 kb on - strand, within MMJJ_RS01710 at 331.132 kb on - strand, within MMJJ_RS01710 at 331.132 kb on - strand, within MMJJ_RS01710 at 331.133 kb on + strand, within MMJJ_RS01710 at 331.133 kb on + strand, within MMJJ_RS01710 at 331.133 kb on + strand, within MMJJ_RS01710 at 331.133 kb on + strand, within MMJJ_RS01710 at 331.134 kb on - strand, within MMJJ_RS01710 at 331.134 kb on - strand, within MMJJ_RS01710 at 331.134 kb on - strand, within MMJJ_RS01710 at 331.134 kb on - strand, within MMJJ_RS01710 at 331.135 kb on + strand, within MMJJ_RS01710 at 331.135 kb on + strand, within MMJJ_RS01710 at 331.140 kb on + strand, within MMJJ_RS01710 at 331.140 kb on + strand, within MMJJ_RS01710 at 331.142 kb on - strand, within MMJJ_RS01710 at 331.142 kb on - strand, within MMJJ_RS01710 at 331.143 kb on + strand, within MMJJ_RS01710 at 331.148 kb on + strand, within MMJJ_RS01710 at 331.148 kb on + strand, within MMJJ_RS01710 at 331.214 kb on + strand, within MMJJ_RS01710 at 331.261 kb on - strand, within MMJJ_RS01710 at 331.284 kb on + strand, within MMJJ_RS01710 at 331.319 kb on + strand, within MMJJ_RS01710 at 331.330 kb on + strand, within MMJJ_RS01710 at 331.333 kb on + strand, within MMJJ_RS01710 at 331.336 kb on - strand, within MMJJ_RS01710 at 331.336 kb on - strand, within MMJJ_RS01710 at 331.337 kb on + strand, within MMJJ_RS01710 at 331.339 kb on + strand, within MMJJ_RS01710 at 331.369 kb on - strand, within MMJJ_RS01710 at 331.370 kb on + strand, within MMJJ_RS01710 at 331.370 kb on + strand, within MMJJ_RS01710 at 331.451 kb on - strand, within MMJJ_RS01710 at 331.451 kb on - strand, within MMJJ_RS01710 at 331.451 kb on - strand, within MMJJ_RS01710 at 331.533 kb on - strand, within MMJJ_RS01710 at 331.550 kb on + strand, within MMJJ_RS01710 at 331.570 kb on - strand, within MMJJ_RS01710 at 331.601 kb on + strand at 331.606 kb on + strand, within MMJJ_RS01710 at 331.608 kb on + strand, within MMJJ_RS01710 at 331.608 kb on + strand, within MMJJ_RS01710 at 331.631 kb on - strand, within MMJJ_RS01710 at 331.690 kb on - strand, within MMJJ_RS01710 at 331.729 kb on - strand at 331.729 kb on - strand at 331.730 kb on + strand at 331.730 kb on + strand at 331.730 kb on + strand at 331.734 kb on - strand at 331.734 kb on - strand at 331.735 kb on + strand at 331.735 kb on + strand at 331.735 kb on + strand at 331.746 kb on - strand at 331.746 kb on - strand at 331.757 kb on - strand at 331.757 kb on - strand at 331.768 kb on - strand at 331.853 kb on - strand at 331.854 kb on + strand at 331.856 kb on + strand at 331.860 kb on - strand at 331.860 kb on - strand at 331.885 kb on - strand at 331.886 kb on + strand at 331.886 kb on + strand at 331.890 kb on - strand at 331.911 kb on - strand at 331.935 kb on - strand at 331.935 kb on - strand at 331.935 kb on - strand at 331.936 kb on + strand at 331.937 kb on - strand at 331.950 kb on + strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.963 kb on + strand at 331.985 kb on + strand at 331.994 kb on - strand at 332.072 kb on - strand at 332.078 kb on + strand at 332.113 kb on - strand at 332.116 kb on - strand, within MMJJ_RS01715 at 332.119 kb on - strand, within MMJJ_RS01715 at 332.120 kb on + strand, within MMJJ_RS01715 at 332.167 kb on - strand, within MMJJ_RS01715 at 332.195 kb on + strand, within MMJJ_RS01715 at 332.230 kb on + strand, within MMJJ_RS01715 at 332.286 kb on - strand, within MMJJ_RS01715 at 332.287 kb on + strand at 332.291 kb on - strand, within MMJJ_RS01715 at 332.292 kb on + strand, within MMJJ_RS01715 at 332.292 kb on + strand, within MMJJ_RS01715 at 332.362 kb on - strand, within MMJJ_RS01715 at 332.362 kb on - strand, within MMJJ_RS01715 at 332.363 kb on + strand, within MMJJ_RS01715 at 332.394 kb on + strand, within MMJJ_RS01715 at 332.396 kb on + strand, within MMJJ_RS01715 at 332.425 kb on - strand, within MMJJ_RS01715 at 332.453 kb on + strand, within MMJJ_RS01715 at 332.464 kb on - strand, within MMJJ_RS01715 at 332.465 kb on + strand, within MMJJ_RS01715 at 332.465 kb on + strand, within MMJJ_RS01715 at 332.587 kb on + strand at 332.605 kb on + strand at 332.616 kb on - strand at 332.616 kb on - strand at 332.617 kb on + strand at 332.645 kb on - strand at 332.682 kb on - strand at 332.682 kb on - strand at 332.683 kb on + strand at 332.683 kb on + strand at 332.683 kb on + strand at 332.684 kb on - strand at 332.686 kb on - strand at 332.687 kb on + strand at 332.698 kb on - strand at 332.698 kb on - strand at 332.707 kb on - strand at 332.719 kb on - strand at 332.720 kb on + strand at 332.728 kb on + strand at 332.733 kb on - strand at 332.734 kb on + strand at 332.734 kb on + strand at 332.734 kb on + strand at 332.734 kb on + strand at 332.735 kb on - strand at 332.735 kb on - strand at 332.736 kb on + strand at 332.739 kb on - strand at 332.756 kb on + strand at 332.825 kb on - strand, within MMJJ_RS01720 at 332.826 kb on + strand, within MMJJ_RS01720 at 332.873 kb on + strand, within MMJJ_RS01720 at 332.879 kb on - strand, within MMJJ_RS01720 at 332.921 kb on - strand, within MMJJ_RS01720 at 332.921 kb on - strand, within MMJJ_RS01720 at 332.921 kb on - strand, within MMJJ_RS01720 at 332.922 kb on + strand, within MMJJ_RS01720 at 332.930 kb on - strand, within MMJJ_RS01720 at 332.930 kb on - strand, within MMJJ_RS01720 at 332.930 kb on - strand, within MMJJ_RS01720 at 332.931 kb on + strand, within MMJJ_RS01720 at 332.931 kb on + strand, within MMJJ_RS01720 at 333.057 kb on + strand, within MMJJ_RS01720 at 333.120 kb on - strand, within MMJJ_RS01720 at 333.120 kb on - strand, within MMJJ_RS01720 at 333.121 kb on + strand, within MMJJ_RS01720 at 333.121 kb on + strand, within MMJJ_RS01720 at 333.121 kb on + strand, within MMJJ_RS01720 at 333.122 kb on - strand, within MMJJ_RS01720 at 333.123 kb on + strand, within MMJJ_RS01720 at 333.163 kb on - strand, within MMJJ_RS01720 at 333.164 kb on + strand, within MMJJ_RS01720 at 333.308 kb on + strand, within MMJJ_RS01720 at 333.342 kb on - strand, within MMJJ_RS01720 at 333.342 kb on - strand, within MMJJ_RS01720 at 333.342 kb on - strand, within MMJJ_RS01720 at 333.343 kb on + strand, within MMJJ_RS01720 at 333.344 kb on - strand, within MMJJ_RS01720 at 333.344 kb on - strand, within MMJJ_RS01720 at 333.344 kb on - strand, within MMJJ_RS01720 at 333.345 kb on + strand, within MMJJ_RS01720 at 333.345 kb on + strand, within MMJJ_RS01720 at 333.346 kb on - strand, within MMJJ_RS01720 at 333.347 kb on + strand, within MMJJ_RS01720 at 333.347 kb on + strand, within MMJJ_RS01720 at 333.347 kb on + strand, within MMJJ_RS01720 at 333.400 kb on + strand, within MMJJ_RS01720 at 333.411 kb on - strand, within MMJJ_RS01720 at 333.417 kb on - strand, within MMJJ_RS01720 at 333.418 kb on + strand, within MMJJ_RS01720 at 333.418 kb on + strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.423 kb on + strand, within MMJJ_RS01720 at 333.423 kb on + strand, within MMJJ_RS01720 at 333.423 kb on + strand, within MMJJ_RS01720 at 333.423 kb on + strand, within MMJJ_RS01720 at 333.424 kb on - strand, within MMJJ_RS01720 at 333.424 kb on - strand, within MMJJ_RS01720 at 333.425 kb on + strand, within MMJJ_RS01720 at 333.434 kb on - strand, within MMJJ_RS01720 at 333.435 kb on + strand, within MMJJ_RS01720 at 333.435 kb on + strand, within MMJJ_RS01720 at 333.435 kb on + strand, within MMJJ_RS01720 at 333.482 kb on + strand, within MMJJ_RS01720 at 333.482 kb on + strand, within MMJJ_RS01720 at 333.502 kb on - strand, within MMJJ_RS01720 at 333.507 kb on - strand, within MMJJ_RS01720 at 333.519 kb on - strand, within MMJJ_RS01720 at 333.519 kb on - strand, within MMJJ_RS01720 at 333.520 kb on + strand, within MMJJ_RS01720 at 333.547 kb on - strand, within MMJJ_RS01720 at 333.547 kb on - strand, within MMJJ_RS01720 at 333.547 kb on - strand, within MMJJ_RS01720 at 333.554 kb on + strand, within MMJJ_RS01720 at 333.554 kb on + strand, within MMJJ_RS01720 at 333.563 kb on - strand, within MMJJ_RS01720 at 333.564 kb on + strand, within MMJJ_RS01720 at 333.564 kb on + strand, within MMJJ_RS01720
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM remove 331,116 + MMJJ_RS01710 0.63 +1.2 331,116 + MMJJ_RS01710 0.63 -0.3 331,132 - MMJJ_RS01710 0.63 +1.0 331,132 - MMJJ_RS01710 0.63 +0.5 331,132 - MMJJ_RS01710 0.63 +1.6 331,133 + MMJJ_RS01710 0.63 -3.2 331,133 + MMJJ_RS01710 0.63 -2.2 331,133 + MMJJ_RS01710 0.63 +1.0 331,133 + MMJJ_RS01710 0.63 -0.2 331,134 - MMJJ_RS01710 0.64 +0.6 331,134 - MMJJ_RS01710 0.64 -0.0 331,134 - MMJJ_RS01710 0.64 +1.2 331,134 - MMJJ_RS01710 0.64 +2.2 331,135 + MMJJ_RS01710 0.64 +1.2 331,135 + MMJJ_RS01710 0.64 +0.2 331,140 + MMJJ_RS01710 0.64 -1.6 331,140 + MMJJ_RS01710 0.64 -1.2 331,142 - MMJJ_RS01710 0.64 -1.8 331,142 - MMJJ_RS01710 0.64 -0.6 331,143 + MMJJ_RS01710 0.64 +1.1 331,148 + MMJJ_RS01710 0.64 -3.2 331,148 + MMJJ_RS01710 0.64 -1.4 331,214 + MMJJ_RS01710 0.67 +1.7 331,261 - MMJJ_RS01710 0.69 -0.6 331,284 + MMJJ_RS01710 0.70 +1.7 331,319 + MMJJ_RS01710 0.72 -2.0 331,330 + MMJJ_RS01710 0.72 +2.2 331,333 + MMJJ_RS01710 0.72 +1.2 331,336 - MMJJ_RS01710 0.73 +3.3 331,336 - MMJJ_RS01710 0.73 -0.4 331,337 + MMJJ_RS01710 0.73 +0.9 331,339 + MMJJ_RS01710 0.73 +0.7 331,369 - MMJJ_RS01710 0.74 +2.8 331,370 + MMJJ_RS01710 0.74 +2.5 331,370 + MMJJ_RS01710 0.74 -1.2 331,451 - MMJJ_RS01710 0.78 -1.0 331,451 - MMJJ_RS01710 0.78 +1.6 331,451 - MMJJ_RS01710 0.78 +3.6 331,533 - MMJJ_RS01710 0.81 +1.2 331,550 + MMJJ_RS01710 0.82 +0.2 331,570 - MMJJ_RS01710 0.83 +1.2 331,601 + +2.9 331,606 + MMJJ_RS01710 0.85 -0.9 331,608 + MMJJ_RS01710 0.85 +1.0 331,608 + MMJJ_RS01710 0.85 -2.8 331,631 - MMJJ_RS01710 0.86 +2.2 331,690 - MMJJ_RS01710 0.88 -1.5 331,729 - +0.6 331,729 - +1.1 331,730 + +2.1 331,730 + +0.0 331,730 + +0.6 331,734 - +0.7 331,734 - +2.1 331,735 + -1.1 331,735 + -0.7 331,735 + -1.6 331,746 - +0.5 331,746 - +0.9 331,757 - +2.0 331,757 - -0.2 331,768 - -3.9 331,853 - -0.4 331,854 + +1.3 331,856 + -2.0 331,860 - +0.5 331,860 - -0.2 331,885 - -2.8 331,886 + -2.8 331,886 + -0.3 331,890 - -3.6 331,911 - -1.3 331,935 - -1.3 331,935 - -0.6 331,935 - +3.7 331,936 + -3.5 331,937 - +3.4 331,950 + +1.1 331,962 - -2.6 331,962 - +0.0 331,962 - +2.2 331,962 - +1.4 331,962 - -3.4 331,962 - -1.4 331,963 + -1.5 331,985 + +1.5 331,994 - +0.8 332,072 - -0.0 332,078 + +2.0 332,113 - +1.7 332,116 - MMJJ_RS01715 0.10 -0.6 332,119 - MMJJ_RS01715 0.11 +1.9 332,120 + MMJJ_RS01715 0.11 -0.2 332,167 - MMJJ_RS01715 0.20 -1.5 332,195 + MMJJ_RS01715 0.25 +0.3 332,230 + MMJJ_RS01715 0.31 -1.6 332,286 - MMJJ_RS01715 0.42 -2.4 332,287 + +1.4 332,291 - MMJJ_RS01715 0.42 -1.0 332,292 + MMJJ_RS01715 0.43 -2.5 332,292 + MMJJ_RS01715 0.43 +1.0 332,362 - MMJJ_RS01715 0.55 -2.7 332,362 - MMJJ_RS01715 0.55 +1.4 332,363 + MMJJ_RS01715 0.56 -0.3 332,394 + MMJJ_RS01715 0.61 -2.3 332,396 + MMJJ_RS01715 0.62 +0.3 332,425 - MMJJ_RS01715 0.67 -3.5 332,453 + MMJJ_RS01715 0.72 +1.5 332,464 - MMJJ_RS01715 0.74 -0.1 332,465 + MMJJ_RS01715 0.74 -1.6 332,465 + MMJJ_RS01715 0.74 -0.7 332,587 + -0.8 332,605 + -1.0 332,616 - +3.4 332,616 - +0.6 332,617 + +3.0 332,645 - -1.4 332,682 - -1.6 332,682 - -2.5 332,683 + +0.9 332,683 + -0.5 332,683 + +4.0 332,684 - +0.6 332,686 - -1.2 332,687 + +1.4 332,698 - -0.5 332,698 - +1.2 332,707 - +2.2 332,719 - -2.4 332,720 + +1.5 332,728 + +0.7 332,733 - -2.9 332,734 + -1.8 332,734 + -0.1 332,734 + +0.4 332,734 + -0.1 332,735 - -1.6 332,735 - +2.0 332,736 + +2.5 332,739 - -1.1 332,756 + -3.5 332,825 - MMJJ_RS01720 0.15 -3.1 332,826 + MMJJ_RS01720 0.15 +1.5 332,873 + MMJJ_RS01720 0.19 -0.9 332,879 - MMJJ_RS01720 0.19 +1.1 332,921 - MMJJ_RS01720 0.22 -0.1 332,921 - MMJJ_RS01720 0.22 -2.0 332,921 - MMJJ_RS01720 0.22 -0.8 332,922 + MMJJ_RS01720 0.23 -3.1 332,930 - MMJJ_RS01720 0.23 +1.0 332,930 - MMJJ_RS01720 0.23 -0.1 332,930 - MMJJ_RS01720 0.23 +0.5 332,931 + MMJJ_RS01720 0.23 +1.6 332,931 + MMJJ_RS01720 0.23 -0.1 333,057 + MMJJ_RS01720 0.33 -2.9 333,120 - MMJJ_RS01720 0.39 -1.0 333,120 - MMJJ_RS01720 0.39 +0.4 333,121 + MMJJ_RS01720 0.39 -0.4 333,121 + MMJJ_RS01720 0.39 +0.4 333,121 + MMJJ_RS01720 0.39 -0.9 333,122 - MMJJ_RS01720 0.39 +0.4 333,123 + MMJJ_RS01720 0.39 -3.0 333,163 - MMJJ_RS01720 0.42 -0.1 333,164 + MMJJ_RS01720 0.42 -2.0 333,308 + MMJJ_RS01720 0.54 -1.6 333,342 - MMJJ_RS01720 0.57 -0.7 333,342 - MMJJ_RS01720 0.57 -0.7 333,342 - MMJJ_RS01720 0.57 -0.8 333,343 + MMJJ_RS01720 0.57 -0.2 333,344 - MMJJ_RS01720 0.57 -5.6 333,344 - MMJJ_RS01720 0.57 -4.3 333,344 - MMJJ_RS01720 0.57 -1.4 333,345 + MMJJ_RS01720 0.57 -4.1 333,345 + MMJJ_RS01720 0.57 -3.9 333,346 - MMJJ_RS01720 0.57 -0.2 333,347 + MMJJ_RS01720 0.57 +0.7 333,347 + MMJJ_RS01720 0.57 -1.6 333,347 + MMJJ_RS01720 0.57 +2.3 333,400 + MMJJ_RS01720 0.61 +0.4 333,411 - MMJJ_RS01720 0.62 +3.2 333,417 - MMJJ_RS01720 0.63 -0.7 333,418 + MMJJ_RS01720 0.63 -3.5 333,418 + MMJJ_RS01720 0.63 +0.8 333,422 - MMJJ_RS01720 0.63 +0.4 333,422 - MMJJ_RS01720 0.63 -0.6 333,422 - MMJJ_RS01720 0.63 -1.1 333,422 - MMJJ_RS01720 0.63 -4.3 333,422 - MMJJ_RS01720 0.63 -0.3 333,423 + MMJJ_RS01720 0.63 -0.4 333,423 + MMJJ_RS01720 0.63 -1.0 333,423 + MMJJ_RS01720 0.63 -1.2 333,423 + MMJJ_RS01720 0.63 -0.7 333,424 - MMJJ_RS01720 0.63 +2.3 333,424 - MMJJ_RS01720 0.63 -4.1 333,425 + MMJJ_RS01720 0.63 +0.9 333,434 - MMJJ_RS01720 0.64 -3.9 333,435 + MMJJ_RS01720 0.64 +0.1 333,435 + MMJJ_RS01720 0.64 +0.1 333,435 + MMJJ_RS01720 0.64 +0.9 333,482 + MMJJ_RS01720 0.68 +2.7 333,482 + MMJJ_RS01720 0.68 -0.7 333,502 - MMJJ_RS01720 0.70 +0.1 333,507 - MMJJ_RS01720 0.70 -1.4 333,519 - MMJJ_RS01720 0.71 -0.4 333,519 - MMJJ_RS01720 0.71 -1.0 333,520 + MMJJ_RS01720 0.71 +3.7 333,547 - MMJJ_RS01720 0.73 -3.1 333,547 - MMJJ_RS01720 0.73 -3.9 333,547 - MMJJ_RS01720 0.73 +1.6 333,554 + MMJJ_RS01720 0.74 -2.8 333,554 + MMJJ_RS01720 0.74 -1.4 333,563 - MMJJ_RS01720 0.75 -3.3 333,564 + MMJJ_RS01720 0.75 -1.3 333,564 + MMJJ_RS01720 0.75 -3.6
Or see this region's nucleotide sequence