Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00725 and MMJJ_RS00730 are separated by 253 nucleotides MMJJ_RS00730 and MMJJ_RS00735 are separated by 73 nucleotides MMJJ_RS00735 and MMJJ_RS00740 are separated by 48 nucleotides MMJJ_RS00740 and MMJJ_RS00745 are separated by 237 nucleotides MMJJ_RS00745 and MMJJ_RS00750 are separated by 34 nucleotides
MMJJ_RS00725: MMJJ_RS00725 - LysE family translocator, at 141,245 to 141,868
_RS00725
MMJJ_RS00730: MMJJ_RS00730 - peptide-methionine (S)-S-oxide reductase MsrA, at 142,122 to 142,595
_RS00730
MMJJ_RS00735: MMJJ_RS00735 - hypothetical protein, at 142,669 to 143,268
_RS00735
MMJJ_RS00740: MMJJ_RS00740 - hypothetical protein, at 143,317 to 143,586
_RS00740
MMJJ_RS00745: MMJJ_RS00745 - hypothetical protein, at 143,824 to 144,180
_RS00745
MMJJ_RS00750: MMJJ_RS00750 - Bax inhibitor-1/YccA family protein, at 144,215 to 144,949
_RS00750
Position (kb) 142
143
144 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 141.669 kb on - strand, within MMJJ_RS00725 at 141.713 kb on - strand, within MMJJ_RS00725 at 141.713 kb on - strand, within MMJJ_RS00725 at 141.714 kb on + strand, within MMJJ_RS00725 at 141.715 kb on - strand, within MMJJ_RS00725 at 141.715 kb on - strand, within MMJJ_RS00725 at 141.715 kb on - strand, within MMJJ_RS00725 at 141.715 kb on - strand, within MMJJ_RS00725 at 141.716 kb on + strand, within MMJJ_RS00725 at 141.716 kb on + strand, within MMJJ_RS00725 at 141.716 kb on + strand, within MMJJ_RS00725 at 141.724 kb on - strand, within MMJJ_RS00725 at 141.772 kb on - strand, within MMJJ_RS00725 at 141.785 kb on - strand, within MMJJ_RS00725 at 141.786 kb on + strand, within MMJJ_RS00725 at 141.786 kb on + strand, within MMJJ_RS00725 at 141.791 kb on - strand, within MMJJ_RS00725 at 141.792 kb on + strand, within MMJJ_RS00725 at 141.794 kb on - strand, within MMJJ_RS00725 at 141.794 kb on - strand, within MMJJ_RS00725 at 141.794 kb on - strand, within MMJJ_RS00725 at 141.795 kb on + strand, within MMJJ_RS00725 at 141.818 kb on + strand at 141.818 kb on + strand at 141.857 kb on + strand at 141.857 kb on + strand at 141.891 kb on - strand at 141.899 kb on - strand at 141.899 kb on - strand at 141.899 kb on - strand at 141.900 kb on + strand at 141.903 kb on - strand at 141.904 kb on + strand at 141.904 kb on + strand at 141.904 kb on + strand at 141.912 kb on - strand at 141.913 kb on + strand at 141.973 kb on - strand at 141.974 kb on + strand at 141.974 kb on + strand at 141.992 kb on - strand at 141.992 kb on - strand at 141.993 kb on + strand at 141.993 kb on + strand at 141.993 kb on + strand at 141.993 kb on + strand at 142.004 kb on - strand at 142.005 kb on + strand at 142.005 kb on + strand at 142.005 kb on + strand at 142.008 kb on - strand at 142.009 kb on + strand at 142.043 kb on + strand at 142.061 kb on - strand at 142.077 kb on + strand at 142.077 kb on + strand at 142.077 kb on + strand at 142.096 kb on - strand at 142.097 kb on + strand at 142.100 kb on + strand at 142.100 kb on + strand at 142.101 kb on - strand at 142.181 kb on + strand, within MMJJ_RS00730 at 142.202 kb on + strand, within MMJJ_RS00730 at 142.252 kb on + strand, within MMJJ_RS00730 at 142.284 kb on + strand, within MMJJ_RS00730 at 142.292 kb on + strand, within MMJJ_RS00730 at 142.306 kb on + strand, within MMJJ_RS00730 at 142.318 kb on - strand, within MMJJ_RS00730 at 142.318 kb on - strand, within MMJJ_RS00730 at 142.318 kb on - strand, within MMJJ_RS00730 at 142.318 kb on - strand, within MMJJ_RS00730 at 142.319 kb on + strand, within MMJJ_RS00730 at 142.326 kb on - strand, within MMJJ_RS00730 at 142.326 kb on - strand, within MMJJ_RS00730 at 142.327 kb on + strand, within MMJJ_RS00730 at 142.327 kb on + strand, within MMJJ_RS00730 at 142.327 kb on + strand, within MMJJ_RS00730 at 142.327 kb on + strand, within MMJJ_RS00730 at 142.340 kb on + strand, within MMJJ_RS00730 at 142.356 kb on + strand at 142.370 kb on - strand, within MMJJ_RS00730 at 142.407 kb on - strand, within MMJJ_RS00730 at 142.417 kb on + strand, within MMJJ_RS00730 at 142.419 kb on + strand, within MMJJ_RS00730 at 142.425 kb on - strand, within MMJJ_RS00730 at 142.447 kb on - strand, within MMJJ_RS00730 at 142.485 kb on + strand, within MMJJ_RS00730 at 142.499 kb on + strand, within MMJJ_RS00730 at 142.530 kb on - strand, within MMJJ_RS00730 at 142.557 kb on - strand at 142.574 kb on - strand at 142.665 kb on - strand at 142.666 kb on + strand at 142.666 kb on + strand at 142.704 kb on + strand at 142.732 kb on - strand, within MMJJ_RS00735 at 142.836 kb on + strand, within MMJJ_RS00735 at 142.836 kb on + strand, within MMJJ_RS00735 at 142.839 kb on + strand, within MMJJ_RS00735 at 142.841 kb on - strand, within MMJJ_RS00735 at 142.841 kb on - strand, within MMJJ_RS00735 at 142.842 kb on + strand, within MMJJ_RS00735 at 142.847 kb on - strand, within MMJJ_RS00735 at 142.889 kb on - strand, within MMJJ_RS00735 at 142.926 kb on - strand at 142.964 kb on - strand, within MMJJ_RS00735 at 142.964 kb on - strand, within MMJJ_RS00735 at 142.964 kb on - strand, within MMJJ_RS00735 at 142.964 kb on - strand, within MMJJ_RS00735 at 142.964 kb on - strand, within MMJJ_RS00735 at 142.964 kb on - strand, within MMJJ_RS00735 at 142.965 kb on + strand, within MMJJ_RS00735 at 142.965 kb on + strand, within MMJJ_RS00735 at 142.965 kb on + strand, within MMJJ_RS00735 at 142.965 kb on + strand, within MMJJ_RS00735 at 142.965 kb on + strand, within MMJJ_RS00735 at 142.965 kb on + strand, within MMJJ_RS00735 at 142.965 kb on + strand, within MMJJ_RS00735 at 142.965 kb on + strand, within MMJJ_RS00735 at 142.990 kb on - strand, within MMJJ_RS00735 at 143.007 kb on - strand, within MMJJ_RS00735 at 143.007 kb on - strand, within MMJJ_RS00735 at 143.035 kb on + strand, within MMJJ_RS00735 at 143.086 kb on + strand, within MMJJ_RS00735 at 143.086 kb on + strand, within MMJJ_RS00735 at 143.089 kb on + strand, within MMJJ_RS00735 at 143.090 kb on - strand, within MMJJ_RS00735 at 143.091 kb on + strand, within MMJJ_RS00735 at 143.138 kb on + strand, within MMJJ_RS00735 at 143.166 kb on + strand, within MMJJ_RS00735 at 143.222 kb on + strand at 143.222 kb on + strand at 143.288 kb on + strand at 143.314 kb on + strand at 143.314 kb on + strand at 143.345 kb on + strand, within MMJJ_RS00740 at 143.406 kb on - strand, within MMJJ_RS00740 at 143.406 kb on - strand, within MMJJ_RS00740 at 143.410 kb on - strand, within MMJJ_RS00740 at 143.413 kb on - strand, within MMJJ_RS00740 at 143.414 kb on + strand, within MMJJ_RS00740 at 143.416 kb on - strand, within MMJJ_RS00740 at 143.416 kb on - strand, within MMJJ_RS00740 at 143.416 kb on - strand, within MMJJ_RS00740 at 143.416 kb on - strand, within MMJJ_RS00740 at 143.416 kb on - strand, within MMJJ_RS00740 at 143.417 kb on + strand, within MMJJ_RS00740 at 143.417 kb on + strand, within MMJJ_RS00740 at 143.432 kb on - strand, within MMJJ_RS00740 at 143.432 kb on - strand, within MMJJ_RS00740 at 143.433 kb on + strand, within MMJJ_RS00740 at 143.443 kb on - strand, within MMJJ_RS00740 at 143.465 kb on - strand, within MMJJ_RS00740 at 143.466 kb on + strand, within MMJJ_RS00740 at 143.507 kb on - strand, within MMJJ_RS00740 at 143.508 kb on + strand, within MMJJ_RS00740 at 143.517 kb on - strand, within MMJJ_RS00740 at 143.518 kb on + strand, within MMJJ_RS00740 at 143.527 kb on - strand, within MMJJ_RS00740 at 143.527 kb on - strand, within MMJJ_RS00740 at 143.556 kb on + strand, within MMJJ_RS00740 at 143.630 kb on - strand at 143.630 kb on - strand at 143.631 kb on + strand at 143.631 kb on + strand at 143.632 kb on - strand at 143.632 kb on - strand at 143.633 kb on + strand at 143.637 kb on + strand at 143.694 kb on - strand at 143.776 kb on - strand at 143.776 kb on - strand at 143.781 kb on - strand at 143.781 kb on - strand at 143.782 kb on + strand at 143.782 kb on + strand at 143.843 kb on - strand at 143.851 kb on + strand at 143.852 kb on - strand at 143.853 kb on + strand at 143.869 kb on - strand, within MMJJ_RS00745 at 143.878 kb on + strand, within MMJJ_RS00745 at 143.885 kb on - strand, within MMJJ_RS00745 at 143.922 kb on - strand, within MMJJ_RS00745 at 143.928 kb on + strand, within MMJJ_RS00745 at 143.952 kb on + strand, within MMJJ_RS00745 at 144.196 kb on + strand at 144.197 kb on - strand at 144.197 kb on - strand at 144.198 kb on + strand at 144.198 kb on + strand at 144.201 kb on - strand at 144.202 kb on + strand at 144.205 kb on + strand at 144.205 kb on + strand at 144.208 kb on + strand at 144.208 kb on + strand at 144.217 kb on + strand at 144.261 kb on - strand at 144.262 kb on + strand at 144.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM remove 141,669 - MMJJ_RS00725 0.68 -2.8 141,713 - MMJJ_RS00725 0.75 -1.0 141,713 - MMJJ_RS00725 0.75 +4.1 141,714 + MMJJ_RS00725 0.75 -2.7 141,715 - MMJJ_RS00725 0.75 -2.1 141,715 - MMJJ_RS00725 0.75 +2.4 141,715 - MMJJ_RS00725 0.75 -2.9 141,715 - MMJJ_RS00725 0.75 +1.4 141,716 + MMJJ_RS00725 0.75 -0.8 141,716 + MMJJ_RS00725 0.75 +0.4 141,716 + MMJJ_RS00725 0.75 -3.1 141,724 - MMJJ_RS00725 0.77 -0.2 141,772 - MMJJ_RS00725 0.84 -2.5 141,785 - MMJJ_RS00725 0.87 -1.2 141,786 + MMJJ_RS00725 0.87 +0.2 141,786 + MMJJ_RS00725 0.87 +1.8 141,791 - MMJJ_RS00725 0.88 -1.0 141,792 + MMJJ_RS00725 0.88 +2.4 141,794 - MMJJ_RS00725 0.88 -4.7 141,794 - MMJJ_RS00725 0.88 +0.9 141,794 - MMJJ_RS00725 0.88 -0.3 141,795 + MMJJ_RS00725 0.88 +0.9 141,818 + -0.3 141,818 + -1.5 141,857 + -0.4 141,857 + +0.7 141,891 - -1.6 141,899 - +0.5 141,899 - +1.5 141,899 - -0.1 141,900 + +1.3 141,903 - +2.1 141,904 + +0.2 141,904 + -0.6 141,904 + +0.4 141,912 - +2.8 141,913 + +0.5 141,973 - -2.4 141,974 + -0.5 141,974 + +1.0 141,992 - +1.3 141,992 - -0.8 141,993 + -2.0 141,993 + -0.9 141,993 + -1.3 141,993 + -0.9 142,004 - +0.0 142,005 + -3.0 142,005 + +0.6 142,005 + -2.0 142,008 - -2.6 142,009 + +2.4 142,043 + -3.6 142,061 - +2.5 142,077 + -1.1 142,077 + +0.5 142,077 + +1.9 142,096 - +4.0 142,097 + +0.8 142,100 + +0.3 142,100 + -1.5 142,101 - -1.3 142,181 + MMJJ_RS00730 0.12 -1.1 142,202 + MMJJ_RS00730 0.17 +0.5 142,252 + MMJJ_RS00730 0.27 +2.4 142,284 + MMJJ_RS00730 0.34 -0.5 142,292 + MMJJ_RS00730 0.36 -2.8 142,306 + MMJJ_RS00730 0.39 -0.6 142,318 - MMJJ_RS00730 0.41 +2.1 142,318 - MMJJ_RS00730 0.41 +0.9 142,318 - MMJJ_RS00730 0.41 +1.3 142,318 - MMJJ_RS00730 0.41 -0.2 142,319 + MMJJ_RS00730 0.42 +2.1 142,326 - MMJJ_RS00730 0.43 -2.4 142,326 - MMJJ_RS00730 0.43 -1.6 142,327 + MMJJ_RS00730 0.43 -2.5 142,327 + MMJJ_RS00730 0.43 -3.2 142,327 + MMJJ_RS00730 0.43 -1.8 142,327 + MMJJ_RS00730 0.43 -2.7 142,340 + MMJJ_RS00730 0.46 -0.6 142,356 + +1.4 142,370 - MMJJ_RS00730 0.52 +0.4 142,407 - MMJJ_RS00730 0.60 -1.9 142,417 + MMJJ_RS00730 0.62 -0.1 142,419 + MMJJ_RS00730 0.63 -0.5 142,425 - MMJJ_RS00730 0.64 -3.6 142,447 - MMJJ_RS00730 0.69 -3.0 142,485 + MMJJ_RS00730 0.77 +3.2 142,499 + MMJJ_RS00730 0.80 +1.9 142,530 - MMJJ_RS00730 0.86 +0.4 142,557 - -2.4 142,574 - +2.2 142,665 - +0.2 142,666 + +1.7 142,666 + -3.2 142,704 + +2.5 142,732 - MMJJ_RS00735 0.10 +1.3 142,836 + MMJJ_RS00735 0.28 -2.8 142,836 + MMJJ_RS00735 0.28 -1.9 142,839 + MMJJ_RS00735 0.28 +0.9 142,841 - MMJJ_RS00735 0.29 +0.2 142,841 - MMJJ_RS00735 0.29 -2.9 142,842 + MMJJ_RS00735 0.29 -1.3 142,847 - MMJJ_RS00735 0.30 +1.4 142,889 - MMJJ_RS00735 0.37 -2.9 142,926 - +1.4 142,964 - MMJJ_RS00735 0.49 +1.7 142,964 - MMJJ_RS00735 0.49 -2.5 142,964 - MMJJ_RS00735 0.49 -1.8 142,964 - MMJJ_RS00735 0.49 -3.4 142,964 - MMJJ_RS00735 0.49 +1.7 142,964 - MMJJ_RS00735 0.49 -1.8 142,965 + MMJJ_RS00735 0.49 -0.3 142,965 + MMJJ_RS00735 0.49 -3.9 142,965 + MMJJ_RS00735 0.49 +0.7 142,965 + MMJJ_RS00735 0.49 +3.9 142,965 + MMJJ_RS00735 0.49 -3.2 142,965 + MMJJ_RS00735 0.49 -0.2 142,965 + MMJJ_RS00735 0.49 +0.1 142,965 + MMJJ_RS00735 0.49 +0.6 142,990 - MMJJ_RS00735 0.54 +2.8 143,007 - MMJJ_RS00735 0.56 -2.2 143,007 - MMJJ_RS00735 0.56 +0.9 143,035 + MMJJ_RS00735 0.61 +0.7 143,086 + MMJJ_RS00735 0.69 -0.6 143,086 + MMJJ_RS00735 0.69 +0.5 143,089 + MMJJ_RS00735 0.70 +0.2 143,090 - MMJJ_RS00735 0.70 +0.5 143,091 + MMJJ_RS00735 0.70 -0.0 143,138 + MMJJ_RS00735 0.78 +0.2 143,166 + MMJJ_RS00735 0.83 -1.5 143,222 + -4.3 143,222 + -2.2 143,288 + -0.8 143,314 + -2.1 143,314 + -0.0 143,345 + MMJJ_RS00740 0.10 +1.7 143,406 - MMJJ_RS00740 0.33 -3.2 143,406 - MMJJ_RS00740 0.33 -0.5 143,410 - MMJJ_RS00740 0.34 +2.1 143,413 - MMJJ_RS00740 0.36 -3.3 143,414 + MMJJ_RS00740 0.36 -0.1 143,416 - MMJJ_RS00740 0.37 +0.4 143,416 - MMJJ_RS00740 0.37 -4.1 143,416 - MMJJ_RS00740 0.37 +0.3 143,416 - MMJJ_RS00740 0.37 -0.6 143,416 - MMJJ_RS00740 0.37 +0.9 143,417 + MMJJ_RS00740 0.37 +0.9 143,417 + MMJJ_RS00740 0.37 -0.4 143,432 - MMJJ_RS00740 0.43 -4.8 143,432 - MMJJ_RS00740 0.43 -1.1 143,433 + MMJJ_RS00740 0.43 -1.4 143,443 - MMJJ_RS00740 0.47 -1.4 143,465 - MMJJ_RS00740 0.55 -3.5 143,466 + MMJJ_RS00740 0.55 +0.9 143,507 - MMJJ_RS00740 0.70 -0.7 143,508 + MMJJ_RS00740 0.71 +0.4 143,517 - MMJJ_RS00740 0.74 +0.1 143,518 + MMJJ_RS00740 0.74 +2.1 143,527 - MMJJ_RS00740 0.78 +0.8 143,527 - MMJJ_RS00740 0.78 +2.1 143,556 + MMJJ_RS00740 0.89 +2.1 143,630 - +2.3 143,630 - +1.2 143,631 + -3.6 143,631 + +2.0 143,632 - -2.4 143,632 - -1.9 143,633 + -2.8 143,637 + +1.2 143,694 - +0.9 143,776 - -3.6 143,776 - -1.2 143,781 - +1.0 143,781 - -1.7 143,782 + +0.7 143,782 + +0.4 143,843 - +1.7 143,851 + -0.0 143,852 - -1.9 143,853 + +1.5 143,869 - MMJJ_RS00745 0.13 +1.9 143,878 + MMJJ_RS00745 0.15 -0.9 143,885 - MMJJ_RS00745 0.17 -3.0 143,922 - MMJJ_RS00745 0.27 -1.2 143,928 + MMJJ_RS00745 0.29 -0.9 143,952 + MMJJ_RS00745 0.36 +1.5 144,196 + +1.6 144,197 - +0.8 144,197 - -2.1 144,198 + +1.3 144,198 + +0.8 144,201 - -0.9 144,202 + +0.6 144,205 + -3.3 144,205 + -1.2 144,208 + -0.5 144,208 + -0.1 144,217 + -0.4 144,261 - -3.7 144,262 + -4.2 144,263 - -1.5
Or see this region's nucleotide sequence