Experiment: McCas_formate_complete selenate 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02165 and MMJJ_RS02170 are separated by 169 nucleotides MMJJ_RS02170 and MMJJ_RS02175 are separated by 9 nucleotides MMJJ_RS02175 and MMJJ_RS02180 are separated by 75 nucleotides
MMJJ_RS02165: MMJJ_RS02165 - ABC transporter substrate-binding protein, at 411,074 to 411,868
_RS02165
MMJJ_RS02170: MMJJ_RS02170 - 2-thiouracil desulfurase family protein, at 412,038 to 412,586
_RS02170
MMJJ_RS02175: MMJJ_RS02175 - imidazoleglycerol-phosphate dehydratase HisB, at 412,596 to 413,168
_RS02175
MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539
_RS02180
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 411.656 kb on - strand, within MMJJ_RS02165 at 411.657 kb on + strand, within MMJJ_RS02165 at 411.657 kb on + strand, within MMJJ_RS02165 at 411.735 kb on + strand, within MMJJ_RS02165 at 411.854 kb on - strand at 411.860 kb on + strand at 411.916 kb on - strand at 411.991 kb on + strand at 412.039 kb on - strand at 412.110 kb on - strand, within MMJJ_RS02170 at 412.149 kb on + strand, within MMJJ_RS02170 at 412.211 kb on - strand, within MMJJ_RS02170 at 412.211 kb on - strand, within MMJJ_RS02170 at 412.212 kb on + strand, within MMJJ_RS02170 at 412.212 kb on + strand, within MMJJ_RS02170 at 412.285 kb on + strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.294 kb on + strand, within MMJJ_RS02170 at 412.311 kb on - strand, within MMJJ_RS02170 at 412.314 kb on + strand, within MMJJ_RS02170 at 412.315 kb on - strand, within MMJJ_RS02170 at 412.316 kb on + strand, within MMJJ_RS02170 at 412.316 kb on + strand, within MMJJ_RS02170 at 412.333 kb on + strand, within MMJJ_RS02170 at 412.348 kb on + strand, within MMJJ_RS02170 at 412.396 kb on + strand, within MMJJ_RS02170 at 412.396 kb on + strand, within MMJJ_RS02170 at 412.413 kb on - strand, within MMJJ_RS02170 at 412.473 kb on - strand, within MMJJ_RS02170 at 412.478 kb on + strand, within MMJJ_RS02170 at 412.495 kb on + strand, within MMJJ_RS02170 at 412.543 kb on + strand at 412.717 kb on + strand at 413.196 kb on + strand at 413.196 kb on + strand at 413.198 kb on + strand at 413.200 kb on - strand at 413.200 kb on - strand at 413.200 kb on - strand at 413.201 kb on + strand at 413.222 kb on - strand at 413.223 kb on + strand at 413.246 kb on + strand at 413.541 kb on + strand, within MMJJ_RS02180 at 413.556 kb on - strand, within MMJJ_RS02180 at 413.711 kb on + strand, within MMJJ_RS02180 at 413.737 kb on + strand, within MMJJ_RS02180 at 413.820 kb on - strand, within MMJJ_RS02180 at 413.917 kb on - strand, within MMJJ_RS02180 at 413.920 kb on + strand, within MMJJ_RS02180 at 413.961 kb on + strand, within MMJJ_RS02180 at 414.004 kb on + strand, within MMJJ_RS02180 at 414.008 kb on - strand, within MMJJ_RS02180
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete selenate 31.25 mM remove 411,656 - MMJJ_RS02165 0.73 +0.7 411,657 + MMJJ_RS02165 0.73 +1.4 411,657 + MMJJ_RS02165 0.73 +3.0 411,735 + MMJJ_RS02165 0.83 +1.9 411,854 - -0.4 411,860 + +0.8 411,916 - -0.4 411,991 + +0.0 412,039 - +0.2 412,110 - MMJJ_RS02170 0.13 -0.6 412,149 + MMJJ_RS02170 0.20 +0.5 412,211 - MMJJ_RS02170 0.32 +1.6 412,211 - MMJJ_RS02170 0.32 +1.2 412,212 + MMJJ_RS02170 0.32 +1.0 412,212 + MMJJ_RS02170 0.32 +1.0 412,285 + MMJJ_RS02170 0.45 -1.3 412,287 - MMJJ_RS02170 0.45 +0.3 412,287 - MMJJ_RS02170 0.45 +0.2 412,287 - MMJJ_RS02170 0.45 -3.3 412,288 + MMJJ_RS02170 0.46 +1.4 412,288 + MMJJ_RS02170 0.46 -3.6 412,288 + MMJJ_RS02170 0.46 -0.7 412,294 + MMJJ_RS02170 0.47 +2.2 412,311 - MMJJ_RS02170 0.50 +1.2 412,314 + MMJJ_RS02170 0.50 -0.5 412,315 - MMJJ_RS02170 0.50 +2.9 412,316 + MMJJ_RS02170 0.51 +1.9 412,316 + MMJJ_RS02170 0.51 +1.7 412,333 + MMJJ_RS02170 0.54 +1.3 412,348 + MMJJ_RS02170 0.56 +3.5 412,396 + MMJJ_RS02170 0.65 -0.2 412,396 + MMJJ_RS02170 0.65 +1.7 412,413 - MMJJ_RS02170 0.68 -0.8 412,473 - MMJJ_RS02170 0.79 +0.9 412,478 + MMJJ_RS02170 0.80 +0.9 412,495 + MMJJ_RS02170 0.83 +1.7 412,543 + +0.6 412,717 + -0.1 413,196 + -2.3 413,196 + -0.5 413,198 + -1.5 413,200 - -0.1 413,200 - +2.9 413,200 - +0.8 413,201 + -0.1 413,222 - -0.9 413,223 + -2.4 413,246 + -0.5 413,541 + MMJJ_RS02180 0.23 -0.1 413,556 - MMJJ_RS02180 0.24 -0.1 413,711 + MMJJ_RS02180 0.36 +0.3 413,737 + MMJJ_RS02180 0.38 -0.0 413,820 - MMJJ_RS02180 0.44 +0.7 413,917 - MMJJ_RS02180 0.52 -1.5 413,920 + MMJJ_RS02180 0.52 -1.4 413,961 + MMJJ_RS02180 0.55 +1.7 414,004 + MMJJ_RS02180 0.59 -1.8 414,008 - MMJJ_RS02180 0.59 +0.5
Or see this region's nucleotide sequence