Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01365

Experiment: McCas_formate_complete selenate 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01360 and MMJJ_RS01365 are separated by 92 nucleotidesMMJJ_RS01365 and MMJJ_RS01370 are separated by 40 nucleotides MMJJ_RS01360: MMJJ_RS01360 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 262,839 to 263,939 _RS01360 MMJJ_RS01365: MMJJ_RS01365 - Mrp/NBP35 family ATP-binding protein, at 264,032 to 264,901 _RS01365 MMJJ_RS01370: MMJJ_RS01370 - MnmC family methyltransferase, at 264,942 to 265,964 _RS01370 Position (kb) 264 265Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 263.104 kb on - strand, within MMJJ_RS01360at 263.518 kb on - strand, within MMJJ_RS01360at 263.723 kb on - strand, within MMJJ_RS01360at 263.723 kb on - strand, within MMJJ_RS01360at 263.724 kb on + strand, within MMJJ_RS01360at 263.801 kb on + strand, within MMJJ_RS01360at 263.948 kb on - strandat 263.950 kb on - strandat 263.950 kb on - strandat 263.951 kb on + strandat 263.978 kb on - strandat 263.978 kb on - strandat 263.978 kb on - strandat 263.979 kb on + strandat 263.979 kb on + strandat 263.981 kb on - strandat 263.981 kb on - strandat 263.987 kb on + strandat 263.993 kb on - strandat 263.993 kb on - strandat 263.994 kb on + strandat 263.995 kb on - strandat 263.995 kb on - strandat 263.995 kb on - strandat 263.995 kb on - strandat 263.996 kb on + strandat 263.996 kb on + strandat 263.996 kb on + strandat 263.997 kb on - strandat 263.997 kb on - strandat 263.997 kb on - strandat 263.997 kb on - strandat 263.998 kb on + strandat 263.998 kb on + strandat 263.998 kb on + strandat 264.004 kb on - strandat 264.005 kb on + strandat 264.009 kb on + strandat 264.012 kb on - strandat 264.012 kb on - strandat 264.061 kb on - strandat 264.136 kb on - strand, within MMJJ_RS01365at 264.152 kb on - strand, within MMJJ_RS01365at 264.255 kb on - strand, within MMJJ_RS01365at 264.336 kb on - strand, within MMJJ_RS01365at 264.338 kb on - strand, within MMJJ_RS01365at 264.338 kb on - strand, within MMJJ_RS01365at 264.384 kb on + strand, within MMJJ_RS01365at 264.412 kb on - strand, within MMJJ_RS01365at 264.414 kb on - strand, within MMJJ_RS01365at 264.489 kb on - strand, within MMJJ_RS01365at 264.520 kb on - strand, within MMJJ_RS01365at 264.591 kb on - strand, within MMJJ_RS01365at 264.618 kb on - strand, within MMJJ_RS01365at 264.655 kb on - strand, within MMJJ_RS01365at 264.681 kb on - strand, within MMJJ_RS01365at 264.709 kb on - strand, within MMJJ_RS01365at 264.750 kb on - strand, within MMJJ_RS01365at 264.827 kb on + strandat 264.838 kb on - strandat 264.899 kb on - strandat 264.899 kb on - strandat 264.904 kb on - strandat 264.938 kb on + strandat 265.036 kb on - strandat 265.140 kb on + strand, within MMJJ_RS01370at 265.262 kb on + strand, within MMJJ_RS01370at 265.262 kb on + strand, within MMJJ_RS01370at 265.265 kb on - strand, within MMJJ_RS01370at 265.265 kb on - strand, within MMJJ_RS01370at 265.265 kb on - strand, within MMJJ_RS01370at 265.265 kb on - strand, within MMJJ_RS01370at 265.266 kb on + strand, within MMJJ_RS01370at 265.266 kb on + strand, within MMJJ_RS01370at 265.267 kb on - strand, within MMJJ_RS01370at 265.267 kb on - strand, within MMJJ_RS01370at 265.267 kb on - strand, within MMJJ_RS01370at 265.267 kb on - strand, within MMJJ_RS01370at 265.268 kb on + strand, within MMJJ_RS01370at 265.271 kb on + strand, within MMJJ_RS01370at 265.271 kb on + strand, within MMJJ_RS01370at 265.271 kb on + strand, within MMJJ_RS01370at 265.275 kb on - strand, within MMJJ_RS01370at 265.297 kb on - strand, within MMJJ_RS01370at 265.334 kb on - strand, within MMJJ_RS01370at 265.351 kb on - strand, within MMJJ_RS01370at 265.374 kb on + strand, within MMJJ_RS01370at 265.453 kb on - strand, within MMJJ_RS01370at 265.478 kb on + strand, within MMJJ_RS01370at 265.493 kb on + strand, within MMJJ_RS01370at 265.493 kb on + strand, within MMJJ_RS01370at 265.493 kb on + strand, within MMJJ_RS01370at 265.496 kb on - strand, within MMJJ_RS01370at 265.497 kb on + strand, within MMJJ_RS01370at 265.557 kb on - strand, within MMJJ_RS01370at 265.646 kb on - strand, within MMJJ_RS01370at 265.646 kb on - strand, within MMJJ_RS01370at 265.647 kb on + strand, within MMJJ_RS01370at 265.657 kb on + strand, within MMJJ_RS01370at 265.729 kb on - strand, within MMJJ_RS01370at 265.733 kb on - strand, within MMJJ_RS01370at 265.734 kb on + strand, within MMJJ_RS01370at 265.786 kb on - strand, within MMJJ_RS01370at 265.839 kb on + strand, within MMJJ_RS01370at 265.842 kb on - strand, within MMJJ_RS01370at 265.843 kb on + strand, within MMJJ_RS01370at 265.843 kb on + strand, within MMJJ_RS01370at 265.843 kb on + strand, within MMJJ_RS01370at 265.853 kb on - strand, within MMJJ_RS01370at 265.862 kb on - strandat 265.863 kb on + strandat 265.876 kb on - strandat 265.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete selenate 31.25 mM
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263,104 - MMJJ_RS01360 0.24 -0.8
263,518 - MMJJ_RS01360 0.62 -0.5
263,723 - MMJJ_RS01360 0.80 -0.2
263,723 - MMJJ_RS01360 0.80 -1.8
263,724 + MMJJ_RS01360 0.80 -0.5
263,801 + MMJJ_RS01360 0.87 -0.5
263,948 - +0.2
263,950 - -1.7
263,950 - -0.4
263,951 + +0.0
263,978 - -2.5
263,978 - -0.5
263,978 - -0.2
263,979 + -0.3
263,979 + -1.9
263,981 - +0.4
263,981 - +0.9
263,987 + -1.0
263,993 - -1.3
263,993 - -1.4
263,994 + -1.0
263,995 - -0.9
263,995 - -1.2
263,995 - -1.9
263,995 - -4.8
263,996 + +0.1
263,996 + -0.8
263,996 + -0.6
263,997 - -0.3
263,997 - -3.3
263,997 - -0.7
263,997 - -3.2
263,998 + -1.0
263,998 + -1.8
263,998 + -4.0
264,004 - -3.0
264,005 + -0.5
264,009 + +1.8
264,012 - -2.8
264,012 - +1.8
264,061 - +0.9
264,136 - MMJJ_RS01365 0.12 -2.5
264,152 - MMJJ_RS01365 0.14 -0.5
264,255 - MMJJ_RS01365 0.26 -1.2
264,336 - MMJJ_RS01365 0.35 -0.4
264,338 - MMJJ_RS01365 0.35 -2.7
264,338 - MMJJ_RS01365 0.35 -0.8
264,384 + MMJJ_RS01365 0.40 -3.2
264,412 - MMJJ_RS01365 0.44 -1.8
264,414 - MMJJ_RS01365 0.44 -0.1
264,489 - MMJJ_RS01365 0.53 -0.1
264,520 - MMJJ_RS01365 0.56 -1.2
264,591 - MMJJ_RS01365 0.64 -2.6
264,618 - MMJJ_RS01365 0.67 -1.0
264,655 - MMJJ_RS01365 0.72 -3.7
264,681 - MMJJ_RS01365 0.75 -4.0
264,709 - MMJJ_RS01365 0.78 +0.2
264,750 - MMJJ_RS01365 0.83 -1.4
264,827 + -2.7
264,838 - -1.7
264,899 - -0.7
264,899 - +0.3
264,904 - -2.0
264,938 + -2.9
265,036 - +1.5
265,140 + MMJJ_RS01370 0.19 -0.2
265,262 + MMJJ_RS01370 0.31 +0.1
265,262 + MMJJ_RS01370 0.31 +1.1
265,265 - MMJJ_RS01370 0.32 +0.3
265,265 - MMJJ_RS01370 0.32 +0.2
265,265 - MMJJ_RS01370 0.32 -0.2
265,265 - MMJJ_RS01370 0.32 +0.9
265,266 + MMJJ_RS01370 0.32 -1.1
265,266 + MMJJ_RS01370 0.32 -1.6
265,267 - MMJJ_RS01370 0.32 -3.4
265,267 - MMJJ_RS01370 0.32 -1.1
265,267 - MMJJ_RS01370 0.32 +0.1
265,267 - MMJJ_RS01370 0.32 -3.1
265,268 + MMJJ_RS01370 0.32 -0.7
265,271 + MMJJ_RS01370 0.32 +0.3
265,271 + MMJJ_RS01370 0.32 -4.8
265,271 + MMJJ_RS01370 0.32 -1.6
265,275 - MMJJ_RS01370 0.33 -4.4
265,297 - MMJJ_RS01370 0.35 -1.8
265,334 - MMJJ_RS01370 0.38 +0.7
265,351 - MMJJ_RS01370 0.40 +1.3
265,374 + MMJJ_RS01370 0.42 +0.3
265,453 - MMJJ_RS01370 0.50 -2.1
265,478 + MMJJ_RS01370 0.52 +0.1
265,493 + MMJJ_RS01370 0.54 -3.6
265,493 + MMJJ_RS01370 0.54 -3.1
265,493 + MMJJ_RS01370 0.54 +0.8
265,496 - MMJJ_RS01370 0.54 -1.6
265,497 + MMJJ_RS01370 0.54 +1.5
265,557 - MMJJ_RS01370 0.60 +2.3
265,646 - MMJJ_RS01370 0.69 +1.1
265,646 - MMJJ_RS01370 0.69 +0.8
265,647 + MMJJ_RS01370 0.69 +1.6
265,657 + MMJJ_RS01370 0.70 -1.5
265,729 - MMJJ_RS01370 0.77 -0.0
265,733 - MMJJ_RS01370 0.77 +0.5
265,734 + MMJJ_RS01370 0.77 +0.9
265,786 - MMJJ_RS01370 0.83 -0.4
265,839 + MMJJ_RS01370 0.88 -1.0
265,842 - MMJJ_RS01370 0.88 +1.0
265,843 + MMJJ_RS01370 0.88 +1.5
265,843 + MMJJ_RS01370 0.88 -0.8
265,843 + MMJJ_RS01370 0.88 -0.1
265,853 - MMJJ_RS01370 0.89 -4.2
265,862 - -0.3
265,863 + -2.5
265,876 - +0.2
265,876 - +1.2

Or see this region's nucleotide sequence