Experiment: McCas_formate_complete Rifampicin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04335 and MMJJ_RS04340 are separated by 12 nucleotides MMJJ_RS04340 and MMJJ_RS04345 are separated by 1 nucleotides MMJJ_RS04345 and MMJJ_RS04350 overlap by 8 nucleotides MMJJ_RS04350 and MMJJ_RS09405 are separated by 18 nucleotides MMJJ_RS09405 and MMJJ_RS04360 are separated by 206 nucleotides
MMJJ_RS04335: MMJJ_RS04335 - minichromosome maintenance protein MCM, at 809,188 to 811,212
_RS04335
MMJJ_RS04340: MMJJ_RS04340 - hypothetical protein, at 811,225 to 811,440
_RS04340
MMJJ_RS04345: MMJJ_RS04345 - DUF2080 family transposase-associated protein, at 811,442 to 811,666
_RS04345
MMJJ_RS04350: MMJJ_RS04350 - hypothetical protein, at 811,659 to 812,162
_RS04350
MMJJ_RS09405: MMJJ_RS09405 - hypothetical protein, at 812,181 to 812,360
_RS09405
MMJJ_RS04360: MMJJ_RS04360 - winged helix-turn-helix transcriptional regulator, at 812,567 to 812,869
_RS04360
Position (kb) 812
813 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 811.186 kb on - strand at 811.276 kb on + strand, within MMJJ_RS04340 at 811.300 kb on - strand, within MMJJ_RS04340 at 811.300 kb on - strand, within MMJJ_RS04340 at 811.301 kb on + strand, within MMJJ_RS04340 at 811.321 kb on + strand, within MMJJ_RS04340 at 811.333 kb on + strand, within MMJJ_RS04340 at 811.407 kb on - strand, within MMJJ_RS04340 at 811.571 kb on - strand, within MMJJ_RS04345 at 811.582 kb on - strand, within MMJJ_RS04345 at 811.582 kb on - strand, within MMJJ_RS04345 at 811.583 kb on + strand, within MMJJ_RS04345 at 811.583 kb on + strand, within MMJJ_RS04345 at 811.635 kb on + strand, within MMJJ_RS04345 at 811.655 kb on - strand at 811.656 kb on + strand at 811.788 kb on - strand, within MMJJ_RS04350 at 811.789 kb on + strand, within MMJJ_RS04350 at 811.789 kb on + strand, within MMJJ_RS04350 at 811.932 kb on + strand, within MMJJ_RS04350 at 811.932 kb on + strand, within MMJJ_RS04350 at 811.965 kb on - strand, within MMJJ_RS04350 at 811.966 kb on + strand, within MMJJ_RS04350 at 811.966 kb on + strand, within MMJJ_RS04350 at 812.059 kb on - strand, within MMJJ_RS04350 at 812.076 kb on - strand, within MMJJ_RS04350 at 812.076 kb on - strand, within MMJJ_RS04350 at 812.089 kb on + strand, within MMJJ_RS04350 at 812.124 kb on + strand at 812.127 kb on - strand at 812.127 kb on - strand at 812.128 kb on + strand at 812.163 kb on + strand at 812.180 kb on + strand at 812.183 kb on + strand at 812.203 kb on + strand, within MMJJ_RS09405 at 812.221 kb on + strand, within MMJJ_RS09405 at 812.279 kb on - strand, within MMJJ_RS09405 at 812.280 kb on + strand, within MMJJ_RS09405 at 812.313 kb on - strand, within MMJJ_RS09405 at 812.314 kb on + strand, within MMJJ_RS09405 at 812.314 kb on + strand, within MMJJ_RS09405 at 812.354 kb on + strand at 812.446 kb on + strand at 812.450 kb on - strand at 812.450 kb on - strand at 812.451 kb on + strand at 812.451 kb on + strand at 812.451 kb on + strand at 812.455 kb on + strand at 812.455 kb on + strand at 812.459 kb on - strand at 812.459 kb on - strand at 812.460 kb on + strand at 812.514 kb on - strand at 812.519 kb on + strand at 812.519 kb on + strand at 812.523 kb on + strand at 812.549 kb on - strand at 812.563 kb on - strand at 812.563 kb on - strand at 812.567 kb on + strand at 812.567 kb on + strand at 812.567 kb on + strand at 812.637 kb on - strand, within MMJJ_RS04360 at 812.657 kb on + strand, within MMJJ_RS04360 at 812.660 kb on - strand, within MMJJ_RS04360 at 812.660 kb on - strand, within MMJJ_RS04360 at 812.722 kb on + strand, within MMJJ_RS04360 at 812.768 kb on - strand, within MMJJ_RS04360 at 812.772 kb on + strand, within MMJJ_RS04360 at 812.773 kb on - strand, within MMJJ_RS04360 at 812.773 kb on - strand, within MMJJ_RS04360 at 812.773 kb on - strand, within MMJJ_RS04360 at 812.774 kb on + strand, within MMJJ_RS04360 at 812.774 kb on + strand, within MMJJ_RS04360 at 812.774 kb on + strand, within MMJJ_RS04360 at 812.836 kb on - strand, within MMJJ_RS04360 at 812.836 kb on - strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.837 kb on + strand, within MMJJ_RS04360 at 812.840 kb on - strand at 812.841 kb on + strand at 812.841 kb on + strand at 812.857 kb on - strand at 812.889 kb on + strand at 812.895 kb on - strand at 812.917 kb on - strand at 812.917 kb on - strand at 813.158 kb on + strand at 813.158 kb on + strand at 813.158 kb on + strand at 813.158 kb on + strand at 813.162 kb on + strand at 813.169 kb on + strand at 813.169 kb on + strand at 813.216 kb on - strand at 813.216 kb on - strand at 813.217 kb on + strand at 813.219 kb on - strand at 813.235 kb on + strand at 813.269 kb on - strand at 813.270 kb on + strand at 813.270 kb on + strand at 813.293 kb on + strand at 813.306 kb on - strand at 813.306 kb on - strand at 813.307 kb on + strand at 813.311 kb on + strand at 813.330 kb on + strand at 813.345 kb on - strand at 813.346 kb on + strand at 813.346 kb on + strand at 813.346 kb on + strand at 813.346 kb on + strand at 813.346 kb on + strand at 813.353 kb on + strand at 813.354 kb on - strand at 813.354 kb on - strand at 813.355 kb on + strand at 813.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM remove 811,186 - +0.2 811,276 + MMJJ_RS04340 0.24 +0.1 811,300 - MMJJ_RS04340 0.35 -0.2 811,300 - MMJJ_RS04340 0.35 -1.2 811,301 + MMJJ_RS04340 0.35 -0.2 811,321 + MMJJ_RS04340 0.44 +0.7 811,333 + MMJJ_RS04340 0.50 +0.1 811,407 - MMJJ_RS04340 0.84 -0.1 811,571 - MMJJ_RS04345 0.57 +0.8 811,582 - MMJJ_RS04345 0.62 +1.2 811,582 - MMJJ_RS04345 0.62 -1.1 811,583 + MMJJ_RS04345 0.63 +1.5 811,583 + MMJJ_RS04345 0.63 -0.9 811,635 + MMJJ_RS04345 0.86 +1.3 811,655 - -1.1 811,656 + +1.5 811,788 - MMJJ_RS04350 0.26 -1.3 811,789 + MMJJ_RS04350 0.26 +2.5 811,789 + MMJJ_RS04350 0.26 -0.2 811,932 + MMJJ_RS04350 0.54 -1.2 811,932 + MMJJ_RS04350 0.54 -0.4 811,965 - MMJJ_RS04350 0.61 +2.7 811,966 + MMJJ_RS04350 0.61 +3.3 811,966 + MMJJ_RS04350 0.61 +0.8 812,059 - MMJJ_RS04350 0.79 -0.4 812,076 - MMJJ_RS04350 0.83 +2.7 812,076 - MMJJ_RS04350 0.83 +0.5 812,089 + MMJJ_RS04350 0.85 -0.0 812,124 + +1.3 812,127 - +2.8 812,127 - +1.0 812,128 + +0.3 812,163 + -0.7 812,180 + -3.2 812,183 + +0.6 812,203 + MMJJ_RS09405 0.12 -2.4 812,221 + MMJJ_RS09405 0.22 -1.4 812,279 - MMJJ_RS09405 0.54 -1.6 812,280 + MMJJ_RS09405 0.55 -3.6 812,313 - MMJJ_RS09405 0.73 +0.7 812,314 + MMJJ_RS09405 0.74 -2.3 812,314 + MMJJ_RS09405 0.74 -0.4 812,354 + +2.7 812,446 + -3.0 812,450 - -0.2 812,450 - +2.7 812,451 + -0.0 812,451 + +0.2 812,451 + +1.5 812,455 + +1.0 812,455 + -2.8 812,459 - -1.5 812,459 - -2.3 812,460 + +1.2 812,514 - -4.2 812,519 + -0.6 812,519 + -1.8 812,523 + -4.8 812,549 - -1.2 812,563 - +0.4 812,563 - -3.5 812,567 + +0.3 812,567 + -5.9 812,567 + -6.2 812,637 - MMJJ_RS04360 0.23 -3.9 812,657 + MMJJ_RS04360 0.30 -2.6 812,660 - MMJJ_RS04360 0.31 +3.2 812,660 - MMJJ_RS04360 0.31 -5.3 812,722 + MMJJ_RS04360 0.51 +1.1 812,768 - MMJJ_RS04360 0.66 +0.2 812,772 + MMJJ_RS04360 0.68 -0.6 812,773 - MMJJ_RS04360 0.68 +1.7 812,773 - MMJJ_RS04360 0.68 +1.0 812,773 - MMJJ_RS04360 0.68 -3.1 812,774 + MMJJ_RS04360 0.68 +0.0 812,774 + MMJJ_RS04360 0.68 -2.8 812,774 + MMJJ_RS04360 0.68 -2.7 812,836 - MMJJ_RS04360 0.89 -1.0 812,836 - MMJJ_RS04360 0.89 -3.0 812,837 + MMJJ_RS04360 0.89 +0.6 812,837 + MMJJ_RS04360 0.89 -3.5 812,837 + MMJJ_RS04360 0.89 +2.5 812,837 + MMJJ_RS04360 0.89 -0.9 812,837 + MMJJ_RS04360 0.89 +2.5 812,837 + MMJJ_RS04360 0.89 +1.6 812,837 + MMJJ_RS04360 0.89 +0.9 812,837 + MMJJ_RS04360 0.89 +2.3 812,837 + MMJJ_RS04360 0.89 -3.7 812,837 + MMJJ_RS04360 0.89 +0.9 812,837 + MMJJ_RS04360 0.89 +1.6 812,840 - -1.4 812,841 + -2.2 812,841 + +0.4 812,857 - -3.6 812,889 + +1.2 812,895 - +0.9 812,917 - +1.4 812,917 - +2.3 813,158 + -0.4 813,158 + -0.2 813,158 + -0.3 813,158 + -0.9 813,162 + +0.4 813,169 + +0.4 813,169 + +0.8 813,216 - +1.3 813,216 - -2.1 813,217 + +1.1 813,219 - +1.6 813,235 + -0.4 813,269 - -0.6 813,270 + -0.9 813,270 + +0.6 813,293 + +0.7 813,306 - -0.6 813,306 - +0.9 813,307 + +0.5 813,311 + -0.9 813,330 + +1.7 813,345 - +2.4 813,346 + +2.5 813,346 + +1.5 813,346 + +0.1 813,346 + -1.2 813,346 + +0.9 813,353 + -0.8 813,354 - +1.0 813,354 - -1.6 813,355 + +0.9 813,355 + +2.1
Or see this region's nucleotide sequence