Experiment: McCas_formate_complete Rifampicin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04685 and MMJJ_RS04690 are separated by 49 nucleotides MMJJ_RS04690 and MMJJ_RS04695 are separated by 23 nucleotides
MMJJ_RS04685: MMJJ_RS04685 - carbamoyltransferase HypF, at 875,026 to 877,341
_RS04685
MMJJ_RS04690: MMJJ_RS04690 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 877,391 to 878,518
_RS04690
MMJJ_RS04695: MMJJ_RS04695 - formate dehydrogenase subunit alpha, at 878,542 to 880,572
_RS04695
Position (kb) 877
878
879 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 876.400 kb on + strand at 876.400 kb on + strand, within MMJJ_RS04685 at 876.420 kb on + strand, within MMJJ_RS04685 at 876.527 kb on + strand, within MMJJ_RS04685 at 876.610 kb on + strand, within MMJJ_RS04685 at 876.626 kb on - strand, within MMJJ_RS04685 at 876.710 kb on + strand at 876.781 kb on + strand, within MMJJ_RS04685 at 876.784 kb on - strand, within MMJJ_RS04685 at 876.784 kb on - strand at 876.809 kb on - strand, within MMJJ_RS04685 at 876.810 kb on + strand, within MMJJ_RS04685 at 876.852 kb on - strand, within MMJJ_RS04685 at 876.853 kb on + strand at 876.916 kb on - strand, within MMJJ_RS04685 at 876.974 kb on - strand, within MMJJ_RS04685 at 877.026 kb on + strand, within MMJJ_RS04685 at 877.028 kb on - strand at 877.028 kb on - strand, within MMJJ_RS04685 at 877.028 kb on - strand, within MMJJ_RS04685 at 877.029 kb on + strand, within MMJJ_RS04685 at 877.029 kb on + strand, within MMJJ_RS04685 at 877.167 kb on - strand at 877.185 kb on - strand at 877.211 kb on - strand at 877.212 kb on + strand at 877.336 kb on + strand at 877.370 kb on + strand at 877.376 kb on - strand at 877.377 kb on + strand at 877.382 kb on - strand at 877.382 kb on - strand at 877.382 kb on - strand at 877.383 kb on + strand at 877.386 kb on - strand at 877.386 kb on - strand at 877.387 kb on + strand at 877.387 kb on + strand at 877.389 kb on - strand at 877.393 kb on + strand at 877.393 kb on + strand at 877.393 kb on + strand at 877.396 kb on - strand at 877.397 kb on + strand at 877.397 kb on + strand at 877.398 kb on - strand at 877.411 kb on - strand at 877.412 kb on + strand at 877.412 kb on + strand at 877.441 kb on - strand at 877.474 kb on + strand at 877.474 kb on + strand at 877.476 kb on + strand at 877.505 kb on - strand, within MMJJ_RS04690 at 877.505 kb on - strand, within MMJJ_RS04690 at 877.505 kb on - strand, within MMJJ_RS04690 at 877.506 kb on + strand, within MMJJ_RS04690 at 877.506 kb on + strand, within MMJJ_RS04690 at 877.506 kb on + strand, within MMJJ_RS04690 at 877.529 kb on - strand, within MMJJ_RS04690 at 877.530 kb on + strand, within MMJJ_RS04690 at 877.532 kb on + strand, within MMJJ_RS04690 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.590 kb on + strand, within MMJJ_RS04690 at 877.608 kb on - strand, within MMJJ_RS04690 at 877.608 kb on - strand, within MMJJ_RS04690 at 877.619 kb on - strand, within MMJJ_RS04690 at 877.620 kb on + strand, within MMJJ_RS04690 at 877.620 kb on + strand, within MMJJ_RS04690 at 877.643 kb on - strand, within MMJJ_RS04690 at 877.643 kb on - strand, within MMJJ_RS04690 at 877.644 kb on + strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.652 kb on - strand, within MMJJ_RS04690 at 877.653 kb on + strand, within MMJJ_RS04690 at 877.653 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.661 kb on + strand, within MMJJ_RS04690 at 877.763 kb on + strand, within MMJJ_RS04690 at 877.763 kb on + strand, within MMJJ_RS04690 at 877.827 kb on + strand, within MMJJ_RS04690 at 877.827 kb on + strand, within MMJJ_RS04690 at 877.856 kb on - strand, within MMJJ_RS04690 at 878.040 kb on + strand, within MMJJ_RS04690 at 878.049 kb on + strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.081 kb on - strand, within MMJJ_RS04690 at 878.096 kb on - strand, within MMJJ_RS04690 at 878.097 kb on + strand, within MMJJ_RS04690 at 878.104 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.171 kb on + strand, within MMJJ_RS04690 at 878.174 kb on - strand, within MMJJ_RS04690 at 878.174 kb on - strand, within MMJJ_RS04690 at 878.175 kb on + strand, within MMJJ_RS04690 at 878.175 kb on + strand, within MMJJ_RS04690 at 878.180 kb on + strand, within MMJJ_RS04690 at 878.214 kb on + strand, within MMJJ_RS04690 at 878.216 kb on - strand, within MMJJ_RS04690 at 878.246 kb on - strand, within MMJJ_RS04690 at 878.246 kb on - strand, within MMJJ_RS04690 at 878.279 kb on - strand, within MMJJ_RS04690 at 878.478 kb on + strand at 878.483 kb on + strand at 878.508 kb on - strand at 878.509 kb on + strand at 878.536 kb on - strand at 878.638 kb on - strand at 878.639 kb on + strand at 878.657 kb on - strand at 878.657 kb on - strand at 878.658 kb on + strand at 878.658 kb on + strand at 878.658 kb on + strand at 878.658 kb on + strand at 878.663 kb on + strand at 878.704 kb on - strand at 878.704 kb on - strand at 878.705 kb on + strand at 878.705 kb on + strand at 878.705 kb on + strand at 878.731 kb on + strand at 878.749 kb on - strand, within MMJJ_RS04695 at 878.780 kb on + strand, within MMJJ_RS04695 at 878.811 kb on - strand, within MMJJ_RS04695 at 878.849 kb on - strand, within MMJJ_RS04695 at 878.849 kb on - strand, within MMJJ_RS04695 at 878.850 kb on + strand, within MMJJ_RS04695 at 878.850 kb on + strand, within MMJJ_RS04695 at 878.860 kb on - strand, within MMJJ_RS04695 at 878.861 kb on + strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.874 kb on - strand, within MMJJ_RS04695 at 878.875 kb on + strand, within MMJJ_RS04695 at 878.875 kb on + strand, within MMJJ_RS04695 at 878.875 kb on + strand, within MMJJ_RS04695 at 878.878 kb on - strand, within MMJJ_RS04695 at 878.878 kb on - strand, within MMJJ_RS04695 at 878.878 kb on - strand, within MMJJ_RS04695 at 878.878 kb on - strand, within MMJJ_RS04695 at 878.879 kb on + strand, within MMJJ_RS04695 at 878.889 kb on + strand, within MMJJ_RS04695 at 878.919 kb on - strand, within MMJJ_RS04695 at 878.920 kb on + strand, within MMJJ_RS04695 at 878.934 kb on - strand, within MMJJ_RS04695 at 879.010 kb on + strand, within MMJJ_RS04695 at 879.010 kb on + strand, within MMJJ_RS04695 at 879.062 kb on - strand, within MMJJ_RS04695 at 879.062 kb on - strand, within MMJJ_RS04695 at 879.072 kb on - strand, within MMJJ_RS04695 at 879.094 kb on - strand, within MMJJ_RS04695 at 879.163 kb on + strand, within MMJJ_RS04695 at 879.163 kb on + strand, within MMJJ_RS04695 at 879.277 kb on - strand, within MMJJ_RS04695 at 879.277 kb on - strand, within MMJJ_RS04695 at 879.326 kb on + strand, within MMJJ_RS04695 at 879.337 kb on - strand, within MMJJ_RS04695 at 879.367 kb on - strand, within MMJJ_RS04695 at 879.367 kb on - strand, within MMJJ_RS04695 at 879.367 kb on - strand, within MMJJ_RS04695 at 879.368 kb on + strand, within MMJJ_RS04695 at 879.368 kb on + strand, within MMJJ_RS04695 at 879.368 kb on + strand, within MMJJ_RS04695 at 879.370 kb on + strand, within MMJJ_RS04695 at 879.414 kb on + strand, within MMJJ_RS04695 at 879.440 kb on + strand, within MMJJ_RS04695 at 879.457 kb on - strand, within MMJJ_RS04695 at 879.475 kb on - strand, within MMJJ_RS04695 at 879.476 kb on + strand, within MMJJ_RS04695
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM remove 876,400 + +0.6 876,400 + MMJJ_RS04685 0.59 +0.3 876,420 + MMJJ_RS04685 0.60 -1.8 876,527 + MMJJ_RS04685 0.65 -0.7 876,610 + MMJJ_RS04685 0.68 +0.6 876,626 - MMJJ_RS04685 0.69 -2.0 876,710 + +0.6 876,781 + MMJJ_RS04685 0.76 -2.3 876,784 - MMJJ_RS04685 0.76 +0.4 876,784 - +2.1 876,809 - MMJJ_RS04685 0.77 -2.0 876,810 + MMJJ_RS04685 0.77 +2.5 876,852 - MMJJ_RS04685 0.79 +1.1 876,853 + +0.1 876,916 - MMJJ_RS04685 0.82 +1.1 876,974 - MMJJ_RS04685 0.84 -1.4 877,026 + MMJJ_RS04685 0.86 -0.9 877,028 - +0.6 877,028 - MMJJ_RS04685 0.86 -0.4 877,028 - MMJJ_RS04685 0.86 -0.7 877,029 + MMJJ_RS04685 0.86 -3.0 877,029 + MMJJ_RS04685 0.86 +1.6 877,167 - -0.2 877,185 - -1.3 877,211 - -0.2 877,212 + +0.6 877,336 + +0.4 877,370 + -3.9 877,376 - -2.6 877,377 + -1.3 877,382 - -4.8 877,382 - +0.3 877,382 - -0.9 877,383 + +3.9 877,386 - +1.7 877,386 - +0.9 877,387 + +1.1 877,387 + +0.4 877,389 - -1.1 877,393 + -1.2 877,393 + -2.3 877,393 + -1.4 877,396 - +1.1 877,397 + -2.9 877,397 + -0.1 877,398 - -0.3 877,411 - -1.2 877,412 + +1.3 877,412 + -0.8 877,441 - +0.6 877,474 + +0.5 877,474 + -1.3 877,476 + +2.1 877,505 - MMJJ_RS04690 0.10 +1.4 877,505 - MMJJ_RS04690 0.10 +1.1 877,505 - MMJJ_RS04690 0.10 +0.2 877,506 + MMJJ_RS04690 0.10 +0.4 877,506 + MMJJ_RS04690 0.10 -1.4 877,506 + MMJJ_RS04690 0.10 +0.6 877,529 - MMJJ_RS04690 0.12 -0.9 877,530 + MMJJ_RS04690 0.12 +1.1 877,532 + MMJJ_RS04690 0.12 +2.5 877,590 + MMJJ_RS04690 0.18 +0.1 877,590 + MMJJ_RS04690 0.18 +2.1 877,590 + MMJJ_RS04690 0.18 +3.0 877,608 - MMJJ_RS04690 0.19 -3.2 877,608 - MMJJ_RS04690 0.19 +1.8 877,619 - MMJJ_RS04690 0.20 +0.4 877,620 + MMJJ_RS04690 0.20 +0.9 877,620 + MMJJ_RS04690 0.20 +1.1 877,643 - MMJJ_RS04690 0.22 +0.5 877,643 - MMJJ_RS04690 0.22 -1.9 877,644 + MMJJ_RS04690 0.22 +0.8 877,652 - MMJJ_RS04690 0.23 +0.4 877,652 - MMJJ_RS04690 0.23 -1.5 877,652 - MMJJ_RS04690 0.23 -1.2 877,652 - MMJJ_RS04690 0.23 +3.5 877,652 - MMJJ_RS04690 0.23 +1.4 877,652 - MMJJ_RS04690 0.23 -0.7 877,653 + MMJJ_RS04690 0.23 +0.6 877,653 + MMJJ_RS04690 0.23 -3.9 877,661 + MMJJ_RS04690 0.24 -2.0 877,661 + MMJJ_RS04690 0.24 +2.1 877,661 + MMJJ_RS04690 0.24 +1.3 877,763 + MMJJ_RS04690 0.33 -2.5 877,763 + MMJJ_RS04690 0.33 +0.5 877,827 + MMJJ_RS04690 0.39 +1.5 877,827 + MMJJ_RS04690 0.39 -0.3 877,856 - MMJJ_RS04690 0.41 +4.6 878,040 + MMJJ_RS04690 0.58 -0.1 878,049 + MMJJ_RS04690 0.58 +0.6 878,081 - MMJJ_RS04690 0.61 +1.5 878,081 - MMJJ_RS04690 0.61 -3.7 878,081 - MMJJ_RS04690 0.61 +0.4 878,096 - MMJJ_RS04690 0.62 +0.2 878,097 + MMJJ_RS04690 0.63 -4.2 878,104 + MMJJ_RS04690 0.63 -0.9 878,171 + MMJJ_RS04690 0.69 -0.0 878,171 + MMJJ_RS04690 0.69 +0.1 878,171 + MMJJ_RS04690 0.69 -2.2 878,174 - MMJJ_RS04690 0.69 -3.6 878,174 - MMJJ_RS04690 0.69 -2.8 878,175 + MMJJ_RS04690 0.70 -0.1 878,175 + MMJJ_RS04690 0.70 -1.6 878,180 + MMJJ_RS04690 0.70 +0.8 878,214 + MMJJ_RS04690 0.73 -0.4 878,216 - MMJJ_RS04690 0.73 +1.3 878,246 - MMJJ_RS04690 0.76 +1.4 878,246 - MMJJ_RS04690 0.76 -0.8 878,279 - MMJJ_RS04690 0.79 +0.4 878,478 + -3.3 878,483 + +0.2 878,508 - +0.3 878,509 + -0.8 878,536 - +0.3 878,638 - -2.5 878,639 + +1.6 878,657 - +1.1 878,657 - +0.6 878,658 + -1.9 878,658 + +0.2 878,658 + +2.4 878,658 + +3.2 878,663 + -1.3 878,704 - -1.6 878,704 - +0.5 878,705 + -0.7 878,705 + +1.6 878,705 + +0.4 878,731 + -1.2 878,749 - MMJJ_RS04695 0.10 +0.9 878,780 + MMJJ_RS04695 0.12 -2.3 878,811 - MMJJ_RS04695 0.13 +0.7 878,849 - MMJJ_RS04695 0.15 +0.6 878,849 - MMJJ_RS04695 0.15 +0.0 878,850 + MMJJ_RS04695 0.15 +2.6 878,850 + MMJJ_RS04695 0.15 +0.8 878,860 - MMJJ_RS04695 0.16 -1.5 878,861 + MMJJ_RS04695 0.16 -1.7 878,874 - MMJJ_RS04695 0.16 +0.8 878,874 - MMJJ_RS04695 0.16 +2.1 878,874 - MMJJ_RS04695 0.16 -0.5 878,874 - MMJJ_RS04695 0.16 +3.1 878,874 - MMJJ_RS04695 0.16 +2.3 878,874 - MMJJ_RS04695 0.16 -1.9 878,875 + MMJJ_RS04695 0.16 +2.0 878,875 + MMJJ_RS04695 0.16 -1.2 878,875 + MMJJ_RS04695 0.16 -1.6 878,878 - MMJJ_RS04695 0.17 -1.6 878,878 - MMJJ_RS04695 0.17 -2.8 878,878 - MMJJ_RS04695 0.17 -1.5 878,878 - MMJJ_RS04695 0.17 +1.1 878,879 + MMJJ_RS04695 0.17 +0.6 878,889 + MMJJ_RS04695 0.17 +0.8 878,919 - MMJJ_RS04695 0.19 +0.1 878,920 + MMJJ_RS04695 0.19 +2.0 878,934 - MMJJ_RS04695 0.19 +2.0 879,010 + MMJJ_RS04695 0.23 +0.6 879,010 + MMJJ_RS04695 0.23 -0.8 879,062 - MMJJ_RS04695 0.26 +2.2 879,062 - MMJJ_RS04695 0.26 -0.2 879,072 - MMJJ_RS04695 0.26 -0.4 879,094 - MMJJ_RS04695 0.27 +0.3 879,163 + MMJJ_RS04695 0.31 +0.8 879,163 + MMJJ_RS04695 0.31 +2.6 879,277 - MMJJ_RS04695 0.36 +0.8 879,277 - MMJJ_RS04695 0.36 +0.1 879,326 + MMJJ_RS04695 0.39 +0.9 879,337 - MMJJ_RS04695 0.39 +0.9 879,367 - MMJJ_RS04695 0.41 -2.6 879,367 - MMJJ_RS04695 0.41 +0.3 879,367 - MMJJ_RS04695 0.41 -1.4 879,368 + MMJJ_RS04695 0.41 +0.5 879,368 + MMJJ_RS04695 0.41 -1.5 879,368 + MMJJ_RS04695 0.41 -0.0 879,370 + MMJJ_RS04695 0.41 -0.9 879,414 + MMJJ_RS04695 0.43 -0.0 879,440 + MMJJ_RS04695 0.44 -1.5 879,457 - MMJJ_RS04695 0.45 -2.5 879,475 - MMJJ_RS04695 0.46 -1.6 879,476 + MMJJ_RS04695 0.46 -3.9
Or see this region's nucleotide sequence