Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03405

Experiment: McCas_formate_complete Rifampicin 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03390 and MMJJ_RS09295 are separated by 7 nucleotidesMMJJ_RS09295 and MMJJ_RS03395 are separated by 24 nucleotidesMMJJ_RS03395 and MMJJ_RS09300 are separated by 12 nucleotidesMMJJ_RS09300 and MMJJ_RS03400 are separated by 11 nucleotidesMMJJ_RS03400 and MMJJ_RS03405 overlap by 8 nucleotidesMMJJ_RS03405 and MMJJ_RS03410 overlap by 8 nucleotidesMMJJ_RS03410 and MMJJ_RS03415 are separated by 3 nucleotidesMMJJ_RS03415 and MMJJ_RS03420 overlap by 8 nucleotides MMJJ_RS03390: MMJJ_RS03390 - hypothetical protein, at 639,826 to 640,062 _RS03390 MMJJ_RS09295: MMJJ_RS09295 - hypothetical protein, at 640,070 to 640,225 _RS09295 MMJJ_RS03395: MMJJ_RS03395 - hypothetical protein, at 640,250 to 640,474 _RS03395 MMJJ_RS09300: MMJJ_RS09300 - hypothetical protein, at 640,487 to 640,660 _RS09300 MMJJ_RS03400: MMJJ_RS03400 - hypothetical protein, at 640,672 to 640,908 _RS03400 MMJJ_RS03405: MMJJ_RS03405 - hypothetical protein, at 640,901 to 642,241 _RS03405 MMJJ_RS03410: MMJJ_RS03410 - hypothetical protein, at 642,234 to 642,650 _RS03410 MMJJ_RS03415: MMJJ_RS03415 - hypothetical protein, at 642,654 to 643,091 _RS03415 MMJJ_RS03420: MMJJ_RS03420 - hypothetical protein, at 643,084 to 643,359 _RS03420 Position (kb) 640 641 642 643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 640.071 kb on - strandat 640.072 kb on + strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.077 kb on - strandat 640.111 kb on - strand, within MMJJ_RS09295at 640.330 kb on - strand, within MMJJ_RS03395at 640.330 kb on - strand, within MMJJ_RS03395at 640.332 kb on - strand, within MMJJ_RS03395at 640.332 kb on - strand, within MMJJ_RS03395at 640.333 kb on + strand, within MMJJ_RS03395at 640.456 kb on - strandat 640.457 kb on + strandat 640.462 kb on - strandat 640.488 kb on - strandat 640.488 kb on - strandat 640.489 kb on + strandat 640.500 kb on + strandat 640.577 kb on - strand, within MMJJ_RS09300at 640.640 kb on - strand, within MMJJ_RS09300at 641.073 kb on - strand, within MMJJ_RS03405at 641.073 kb on - strand, within MMJJ_RS03405at 641.162 kb on + strand, within MMJJ_RS03405at 641.218 kb on + strand, within MMJJ_RS03405at 641.234 kb on - strand, within MMJJ_RS03405at 641.236 kb on - strand, within MMJJ_RS03405at 641.236 kb on - strand, within MMJJ_RS03405at 641.237 kb on + strand, within MMJJ_RS03405at 641.348 kb on + strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.372 kb on - strand, within MMJJ_RS03405at 641.373 kb on + strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.422 kb on - strand, within MMJJ_RS03405at 641.423 kb on + strand, within MMJJ_RS03405at 641.423 kb on + strand, within MMJJ_RS03405at 641.438 kb on + strand, within MMJJ_RS03405at 641.487 kb on + strand, within MMJJ_RS03405at 641.509 kb on - strand, within MMJJ_RS03405at 641.510 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.514 kb on - strand, within MMJJ_RS03405at 641.517 kb on - strand, within MMJJ_RS03405at 641.607 kb on + strand, within MMJJ_RS03405at 641.697 kb on + strandat 641.728 kb on + strand, within MMJJ_RS03405at 641.735 kb on + strand, within MMJJ_RS03405at 641.735 kb on + strand, within MMJJ_RS03405at 641.737 kb on + strand, within MMJJ_RS03405at 641.777 kb on + strand, within MMJJ_RS03405at 641.789 kb on - strand, within MMJJ_RS03405at 641.879 kb on - strand, within MMJJ_RS03405at 641.903 kb on + strand, within MMJJ_RS03405at 641.907 kb on - strand, within MMJJ_RS03405at 642.103 kb on + strand, within MMJJ_RS03405at 642.161 kb on - strandat 642.208 kb on + strandat 642.238 kb on + strandat 642.238 kb on + strandat 642.285 kb on - strand, within MMJJ_RS03410at 642.329 kb on - strand, within MMJJ_RS03410at 642.368 kb on - strand, within MMJJ_RS03410at 642.420 kb on - strand, within MMJJ_RS03410at 642.508 kb on - strand, within MMJJ_RS03410at 642.540 kb on - strand, within MMJJ_RS03410at 642.595 kb on - strand, within MMJJ_RS03410at 642.656 kb on + strandat 642.734 kb on + strand, within MMJJ_RS03415at 642.741 kb on - strand, within MMJJ_RS03415at 642.795 kb on + strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.873 kb on - strand, within MMJJ_RS03415at 642.891 kb on - strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.957 kb on - strand, within MMJJ_RS03415at 642.958 kb on + strand, within MMJJ_RS03415at 642.988 kb on - strand, within MMJJ_RS03415at 643.065 kb on + strandat 643.071 kb on + strandat 643.071 kb on + strandat 643.108 kb on - strandat 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.133 kb on - strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.188 kb on + strand, within MMJJ_RS03420at 643.213 kb on - strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.218 kb on + strand, within MMJJ_RS03420at 643.232 kb on + strand, within MMJJ_RS03420at 643.238 kb on - strand, within MMJJ_RS03420at 643.239 kb on + strand, within MMJJ_RS03420

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM
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640,071 - +0.5
640,072 + +3.1
640,075 - +0.0
640,075 - +1.2
640,075 - +0.0
640,075 - -1.6
640,075 - -1.0
640,075 - +0.6
640,077 - +0.2
640,111 - MMJJ_RS09295 0.26 -2.5
640,330 - MMJJ_RS03395 0.36 -0.7
640,330 - MMJJ_RS03395 0.36 -0.3
640,332 - MMJJ_RS03395 0.36 +2.2
640,332 - MMJJ_RS03395 0.36 -1.3
640,333 + MMJJ_RS03395 0.37 -0.1
640,456 - -1.1
640,457 + -0.2
640,462 - +1.4
640,488 - +1.1
640,488 - -3.1
640,489 + -3.4
640,500 + +1.6
640,577 - MMJJ_RS09300 0.52 -0.1
640,640 - MMJJ_RS09300 0.88 -1.9
641,073 - MMJJ_RS03405 0.13 +1.5
641,073 - MMJJ_RS03405 0.13 +0.3
641,162 + MMJJ_RS03405 0.19 +1.7
641,218 + MMJJ_RS03405 0.24 +1.7
641,234 - MMJJ_RS03405 0.25 +0.2
641,236 - MMJJ_RS03405 0.25 +2.1
641,236 - MMJJ_RS03405 0.25 +2.3
641,237 + MMJJ_RS03405 0.25 -0.2
641,348 + MMJJ_RS03405 0.33 -1.3
641,349 - MMJJ_RS03405 0.33 +2.2
641,349 - MMJJ_RS03405 0.33 +1.9
641,349 - MMJJ_RS03405 0.33 +0.1
641,370 + MMJJ_RS03405 0.35 -1.4
641,370 + MMJJ_RS03405 0.35 -0.9
641,370 + MMJJ_RS03405 0.35 +1.8
641,372 - MMJJ_RS03405 0.35 -0.7
641,373 + MMJJ_RS03405 0.35 -1.0
641,374 - MMJJ_RS03405 0.35 +1.4
641,374 - MMJJ_RS03405 0.35 +0.7
641,374 - MMJJ_RS03405 0.35 +0.3
641,374 - MMJJ_RS03405 0.35 +3.5
641,375 + MMJJ_RS03405 0.35 +0.5
641,375 + MMJJ_RS03405 0.35 -0.5
641,375 + MMJJ_RS03405 0.35 -0.1
641,375 + MMJJ_RS03405 0.35 -0.7
641,375 + MMJJ_RS03405 0.35 -2.6
641,422 - MMJJ_RS03405 0.39 +1.1
641,423 + MMJJ_RS03405 0.39 +1.7
641,423 + MMJJ_RS03405 0.39 -1.9
641,438 + MMJJ_RS03405 0.40 -0.6
641,487 + MMJJ_RS03405 0.44 +3.7
641,509 - MMJJ_RS03405 0.45 -1.3
641,510 + MMJJ_RS03405 0.45 +0.1
641,513 + MMJJ_RS03405 0.46 +1.8
641,513 + MMJJ_RS03405 0.46 -3.4
641,513 + MMJJ_RS03405 0.46 -1.0
641,514 - MMJJ_RS03405 0.46 +0.6
641,517 - MMJJ_RS03405 0.46 +0.5
641,607 + MMJJ_RS03405 0.53 -3.8
641,697 + +1.1
641,728 + MMJJ_RS03405 0.62 -1.2
641,735 + MMJJ_RS03405 0.62 +2.8
641,735 + MMJJ_RS03405 0.62 -2.4
641,737 + MMJJ_RS03405 0.62 -0.0
641,777 + MMJJ_RS03405 0.65 -1.2
641,789 - MMJJ_RS03405 0.66 -2.6
641,879 - MMJJ_RS03405 0.73 -1.5
641,903 + MMJJ_RS03405 0.75 +0.5
641,907 - MMJJ_RS03405 0.75 -0.3
642,103 + MMJJ_RS03405 0.90 +0.1
642,161 - -0.2
642,208 + -3.6
642,238 + -1.0
642,238 + -2.3
642,285 - MMJJ_RS03410 0.12 +0.7
642,329 - MMJJ_RS03410 0.23 +0.6
642,368 - MMJJ_RS03410 0.32 +2.2
642,420 - MMJJ_RS03410 0.45 +3.2
642,508 - MMJJ_RS03410 0.66 +0.3
642,540 - MMJJ_RS03410 0.73 +2.3
642,595 - MMJJ_RS03410 0.87 +1.5
642,656 + -0.7
642,734 + MMJJ_RS03415 0.18 +1.9
642,741 - MMJJ_RS03415 0.20 -2.9
642,795 + MMJJ_RS03415 0.32 +1.1
642,821 - MMJJ_RS03415 0.38 -0.1
642,821 - MMJJ_RS03415 0.38 -0.3
642,873 - MMJJ_RS03415 0.50 -2.8
642,891 - MMJJ_RS03415 0.54 +1.5
642,899 + MMJJ_RS03415 0.56 +1.9
642,899 + MMJJ_RS03415 0.56 -0.4
642,951 - MMJJ_RS03415 0.68 -0.7
642,951 - MMJJ_RS03415 0.68 +1.9
642,951 - MMJJ_RS03415 0.68 -0.2
642,957 - MMJJ_RS03415 0.69 -2.1
642,958 + MMJJ_RS03415 0.69 -0.4
642,988 - MMJJ_RS03415 0.76 +0.7
643,065 + -0.4
643,071 + -0.7
643,071 + +0.4
643,108 - -1.8
643,116 + MMJJ_RS03420 0.12 -0.9
643,116 + MMJJ_RS03420 0.12 -2.5
643,116 + MMJJ_RS03420 0.12 +0.7
643,133 - MMJJ_RS03420 0.18 -2.5
643,134 + MMJJ_RS03420 0.18 +1.6
643,134 + MMJJ_RS03420 0.18 +0.1
643,188 + MMJJ_RS03420 0.38 -1.4
643,213 - MMJJ_RS03420 0.47 -1.3
643,214 + MMJJ_RS03420 0.47 -3.3
643,214 + MMJJ_RS03420 0.47 -0.4
643,214 + MMJJ_RS03420 0.47 -1.8
643,217 - MMJJ_RS03420 0.48 +1.8
643,217 - MMJJ_RS03420 0.48 +1.7
643,218 + MMJJ_RS03420 0.49 -0.3
643,232 + MMJJ_RS03420 0.54 -0.5
643,238 - MMJJ_RS03420 0.56 -1.6
643,239 + MMJJ_RS03420 0.56 -2.5

Or see this region's nucleotide sequence