Experiment: McCas_formate_complete Rifampicin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01280 and MMJJ_RS01285 are separated by 252 nucleotides MMJJ_RS01285 and MMJJ_RS01290 are separated by 38 nucleotides MMJJ_RS01290 and MMJJ_RS01300 are separated by 381 nucleotides
MMJJ_RS01280: MMJJ_RS01280 - hydroxylamine reductase, at 246,224 to 247,864
_RS01280
MMJJ_RS01285: MMJJ_RS01285 - CopG family ribbon-helix-helix protein, at 248,117 to 248,524
_RS01285
MMJJ_RS01290: MMJJ_RS01290 - hypothetical protein, at 248,563 to 248,913
_RS01290
MMJJ_RS01300: MMJJ_RS01300 - MarR family transcriptional regulator, at 249,295 to 249,831
_RS01300
Position (kb) 248
249 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 247.134 kb on + strand, within MMJJ_RS01280 at 247.246 kb on - strand, within MMJJ_RS01280 at 247.246 kb on - strand, within MMJJ_RS01280 at 247.257 kb on - strand, within MMJJ_RS01280 at 247.410 kb on + strand, within MMJJ_RS01280 at 247.423 kb on - strand, within MMJJ_RS01280 at 247.424 kb on + strand, within MMJJ_RS01280 at 247.442 kb on - strand, within MMJJ_RS01280 at 247.574 kb on - strand, within MMJJ_RS01280 at 247.637 kb on + strand, within MMJJ_RS01280 at 247.667 kb on - strand, within MMJJ_RS01280 at 247.672 kb on - strand, within MMJJ_RS01280 at 247.672 kb on - strand, within MMJJ_RS01280 at 247.674 kb on - strand, within MMJJ_RS01280 at 247.674 kb on - strand, within MMJJ_RS01280 at 247.674 kb on - strand, within MMJJ_RS01280 at 247.675 kb on + strand, within MMJJ_RS01280 at 247.679 kb on + strand, within MMJJ_RS01280 at 247.683 kb on + strand, within MMJJ_RS01280 at 247.685 kb on + strand, within MMJJ_RS01280 at 247.740 kb on - strand at 247.745 kb on - strand at 247.746 kb on + strand at 247.837 kb on - strand at 247.864 kb on - strand at 247.908 kb on - strand at 247.908 kb on - strand at 247.911 kb on + strand at 247.914 kb on + strand at 247.949 kb on - strand at 247.960 kb on - strand at 248.019 kb on + strand at 248.068 kb on + strand at 248.126 kb on + strand at 248.129 kb on + strand at 248.139 kb on - strand at 248.155 kb on - strand at 248.173 kb on + strand, within MMJJ_RS01285 at 248.187 kb on + strand, within MMJJ_RS01285 at 248.208 kb on + strand, within MMJJ_RS01285 at 248.253 kb on - strand, within MMJJ_RS01285 at 248.253 kb on - strand, within MMJJ_RS01285 at 248.273 kb on - strand, within MMJJ_RS01285 at 248.396 kb on - strand, within MMJJ_RS01285 at 248.456 kb on - strand, within MMJJ_RS01285 at 248.457 kb on + strand, within MMJJ_RS01285 at 248.514 kb on + strand at 248.541 kb on + strand at 248.544 kb on - strand at 248.549 kb on + strand at 248.579 kb on + strand at 248.665 kb on - strand, within MMJJ_RS01290 at 248.665 kb on - strand, within MMJJ_RS01290 at 248.667 kb on - strand, within MMJJ_RS01290 at 248.668 kb on + strand, within MMJJ_RS01290 at 248.713 kb on - strand, within MMJJ_RS01290 at 248.714 kb on + strand, within MMJJ_RS01290 at 248.735 kb on - strand, within MMJJ_RS01290 at 248.739 kb on - strand, within MMJJ_RS01290 at 248.746 kb on + strand, within MMJJ_RS01290 at 248.746 kb on + strand, within MMJJ_RS01290 at 248.762 kb on - strand, within MMJJ_RS01290 at 248.764 kb on - strand, within MMJJ_RS01290 at 248.764 kb on - strand, within MMJJ_RS01290 at 248.774 kb on - strand, within MMJJ_RS01290 at 248.775 kb on + strand, within MMJJ_RS01290 at 248.775 kb on + strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.777 kb on + strand, within MMJJ_RS01290 at 248.777 kb on + strand, within MMJJ_RS01290 at 248.788 kb on - strand, within MMJJ_RS01290 at 248.793 kb on + strand, within MMJJ_RS01290 at 248.805 kb on - strand, within MMJJ_RS01290 at 248.806 kb on + strand, within MMJJ_RS01290 at 248.882 kb on + strand at 248.893 kb on - strand at 248.893 kb on - strand at 248.894 kb on + strand at 248.936 kb on + strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.941 kb on + strand at 248.943 kb on - strand at 248.943 kb on - strand at 248.943 kb on - strand at 248.944 kb on + strand at 248.944 kb on + strand at 248.945 kb on - strand at 248.945 kb on - strand at 248.946 kb on + strand at 248.958 kb on + strand at 248.958 kb on + strand at 248.963 kb on - strand at 248.963 kb on - strand at 249.004 kb on - strand at 249.013 kb on - strand at 249.017 kb on - strand at 249.025 kb on - strand at 249.025 kb on - strand at 249.065 kb on - strand at 249.065 kb on - strand at 249.074 kb on + strand at 249.094 kb on - strand at 249.132 kb on + strand at 249.137 kb on + strand at 249.140 kb on + strand at 249.151 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.154 kb on + strand at 249.171 kb on + strand at 249.171 kb on + strand at 249.171 kb on + strand at 249.210 kb on - strand at 249.268 kb on - strand at 249.269 kb on + strand at 249.270 kb on - strand at 249.276 kb on + strand at 249.281 kb on + strand at 249.281 kb on + strand at 249.314 kb on - strand at 249.314 kb on - strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.319 kb on - strand at 249.328 kb on - strand at 249.344 kb on - strand at 249.344 kb on - strand at 249.352 kb on + strand, within MMJJ_RS01300 at 249.352 kb on + strand, within MMJJ_RS01300 at 249.371 kb on - strand, within MMJJ_RS01300 at 249.455 kb on - strand, within MMJJ_RS01300 at 249.455 kb on - strand, within MMJJ_RS01300 at 249.499 kb on - strand, within MMJJ_RS01300 at 249.500 kb on + strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM remove 247,134 + MMJJ_RS01280 0.55 -3.0 247,246 - MMJJ_RS01280 0.62 -0.9 247,246 - MMJJ_RS01280 0.62 -3.4 247,257 - MMJJ_RS01280 0.63 +1.1 247,410 + MMJJ_RS01280 0.72 -2.0 247,423 - MMJJ_RS01280 0.73 -4.3 247,424 + MMJJ_RS01280 0.73 -0.6 247,442 - MMJJ_RS01280 0.74 +1.2 247,574 - MMJJ_RS01280 0.82 -1.4 247,637 + MMJJ_RS01280 0.86 -0.5 247,667 - MMJJ_RS01280 0.88 +2.7 247,672 - MMJJ_RS01280 0.88 +1.8 247,672 - MMJJ_RS01280 0.88 +0.5 247,674 - MMJJ_RS01280 0.88 -0.2 247,674 - MMJJ_RS01280 0.88 -0.0 247,674 - MMJJ_RS01280 0.88 -2.8 247,675 + MMJJ_RS01280 0.88 -0.7 247,679 + MMJJ_RS01280 0.89 -0.6 247,683 + MMJJ_RS01280 0.89 -2.6 247,685 + MMJJ_RS01280 0.89 +0.5 247,740 - -0.4 247,745 - -0.6 247,746 + +0.1 247,837 - +1.3 247,864 - +3.2 247,908 - +0.1 247,908 - +0.4 247,911 + -0.7 247,914 + +2.8 247,949 - -0.8 247,960 - -0.2 248,019 + -2.5 248,068 + +1.7 248,126 + +0.9 248,129 + -0.1 248,139 - -1.6 248,155 - -0.4 248,173 + MMJJ_RS01285 0.14 -2.3 248,187 + MMJJ_RS01285 0.17 -5.3 248,208 + MMJJ_RS01285 0.22 -0.3 248,253 - MMJJ_RS01285 0.33 -1.6 248,253 - MMJJ_RS01285 0.33 -2.5 248,273 - MMJJ_RS01285 0.38 -0.7 248,396 - MMJJ_RS01285 0.68 +1.3 248,456 - MMJJ_RS01285 0.83 -1.0 248,457 + MMJJ_RS01285 0.83 -0.4 248,514 + -3.1 248,541 + +1.4 248,544 - +0.7 248,549 + +2.2 248,579 + -0.7 248,665 - MMJJ_RS01290 0.29 +0.7 248,665 - MMJJ_RS01290 0.29 +0.7 248,667 - MMJJ_RS01290 0.30 -3.1 248,668 + MMJJ_RS01290 0.30 -3.2 248,713 - MMJJ_RS01290 0.43 -1.6 248,714 + MMJJ_RS01290 0.43 -2.2 248,735 - MMJJ_RS01290 0.49 +0.9 248,739 - MMJJ_RS01290 0.50 -0.2 248,746 + MMJJ_RS01290 0.52 -1.2 248,746 + MMJJ_RS01290 0.52 -2.0 248,762 - MMJJ_RS01290 0.57 +0.7 248,764 - MMJJ_RS01290 0.57 -0.8 248,764 - MMJJ_RS01290 0.57 +1.4 248,774 - MMJJ_RS01290 0.60 -1.6 248,775 + MMJJ_RS01290 0.60 +0.6 248,775 + MMJJ_RS01290 0.60 -1.7 248,776 - MMJJ_RS01290 0.61 +0.8 248,776 - MMJJ_RS01290 0.61 -0.5 248,776 - MMJJ_RS01290 0.61 -1.6 248,777 + MMJJ_RS01290 0.61 -2.0 248,777 + MMJJ_RS01290 0.61 -1.3 248,788 - MMJJ_RS01290 0.64 +1.1 248,793 + MMJJ_RS01290 0.66 -3.2 248,805 - MMJJ_RS01290 0.69 -1.7 248,806 + MMJJ_RS01290 0.69 -4.1 248,882 + -1.2 248,893 - -2.0 248,893 - -2.4 248,894 + -2.5 248,936 + -3.1 248,940 - -3.5 248,940 - +0.6 248,940 - +0.8 248,940 - +1.9 248,941 + +1.2 248,943 - -0.4 248,943 - +0.3 248,943 - +1.0 248,944 + -2.1 248,944 + +0.7 248,945 - -0.2 248,945 - -2.8 248,946 + -0.6 248,958 + +0.9 248,958 + -5.4 248,963 - -2.6 248,963 - -0.2 249,004 - +1.2 249,013 - -2.5 249,017 - +3.0 249,025 - +0.3 249,025 - +1.0 249,065 - +0.3 249,065 - -1.7 249,074 + +2.9 249,094 - +1.6 249,132 + -1.2 249,137 + +0.3 249,140 + +0.3 249,151 - +0.6 249,153 - -0.8 249,153 - -0.3 249,153 - -0.7 249,153 - +0.9 249,154 + -1.1 249,171 + +2.4 249,171 + +1.1 249,171 + +0.7 249,210 - +0.6 249,268 - +2.2 249,269 + +3.3 249,270 - +2.3 249,276 + +2.0 249,281 + -0.9 249,281 + -0.5 249,314 - +1.8 249,314 - +0.2 249,315 + +2.0 249,315 + +1.4 249,315 + +0.1 249,315 + -2.4 249,315 + -0.4 249,319 - -2.6 249,328 - -0.9 249,344 - +0.3 249,344 - +1.2 249,352 + MMJJ_RS01300 0.11 +2.5 249,352 + MMJJ_RS01300 0.11 -1.6 249,371 - MMJJ_RS01300 0.14 +1.6 249,455 - MMJJ_RS01300 0.30 -0.1 249,455 - MMJJ_RS01300 0.30 +0.3 249,499 - MMJJ_RS01300 0.38 -0.1 249,500 + MMJJ_RS01300 0.38 -1.6 249,502 - MMJJ_RS01300 0.39 -2.6 249,502 - MMJJ_RS01300 0.39 -1.9 249,502 - MMJJ_RS01300 0.39 -2.5 249,503 + MMJJ_RS01300 0.39 -1.6 249,503 + MMJJ_RS01300 0.39 -0.3 249,503 + MMJJ_RS01300 0.39 +0.4 249,503 + MMJJ_RS01300 0.39 -2.2
Or see this region's nucleotide sequence