Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08875

Experiment: McCas_formate_complete Irgasan 0.0125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Irgasan 0.0125 mM
1,636,074	-				+0.6
1,636,075	+				+0.0
1,636,246	-				+0.3
1,636,246	-				-1.7
1,636,247	+				-2.7
1,636,268	-				-2.0
1,636,268	-				+0.4
1,636,268	-				-3.0
1,636,268	-				-3.3
1,636,268	-				-2.7
1,636,268	-				+2.0
1,636,268	-				+3.7
1,636,268	-				-1.8
1,636,268	-				-2.9
1,636,268	-				-1.4
1,636,268	-				-3.1
1,636,268	-				-3.3
1,636,268	-				+3.3
1,636,269	+				+1.9
1,636,269	+				-0.4
1,636,269	+				+1.0
1,636,269	+				+0.6
1,636,269	+				+0.7
1,636,269	+				-0.2
1,636,269	+				+0.4
1,636,269	+				-3.0
1,636,269	+				-0.8
1,636,269	+				-0.3
1,636,269	+				+1.5
1,636,269	+				+1.1
1,636,269	+				+1.2
1,636,269	+				-4.4
1,636,273	+				-4.8
1,636,302	-				-1.3
1,636,303	+				-0.2
1,636,303	+				+1.1
1,636,306	-				-4.1
1,636,306	-				+0.3
1,636,307	+				-0.6
1,636,307	+				+0.3
1,636,317	-				-2.4
1,636,318	+				-1.0
1,636,318	+				+0.8
1,636,318	+				+0.6
1,636,319	-				+2.1
1,636,349	-				+2.0
1,636,386	-				-1.4
1,636,400	-				+3.3
1,636,400	-				+0.7
1,636,403	+				-3.3
1,636,406	-				+1.3
1,636,442	-		MMJJ_RS08875	0.11	-1.6
1,636,456	-		MMJJ_RS08875	0.11	-1.7
1,636,469	+		MMJJ_RS08875	0.12	+0.9
1,636,473	+		MMJJ_RS08875	0.12	+2.5
1,636,473	+		MMJJ_RS08875	0.12	-3.8
1,636,525	-		MMJJ_RS08875	0.15	-0.8
1,636,525	-		MMJJ_RS08875	0.15	+2.2
1,636,547	-		MMJJ_RS08875	0.16	-2.7
1,636,549	-		MMJJ_RS08875	0.16	+3.1
1,636,549	-		MMJJ_RS08875	0.16	-1.0
1,636,549	-		MMJJ_RS08875	0.16	-2.8
1,636,550	+		MMJJ_RS08875	0.17	-2.4
1,636,550	+		MMJJ_RS08875	0.17	+0.6
1,636,550	+		MMJJ_RS08875	0.17	+1.5
1,636,572	-		MMJJ_RS08875	0.18	-1.3
1,636,637	-		MMJJ_RS08875	0.21	-2.8
1,636,638	+		MMJJ_RS08875	0.21	-1.2
1,636,640	-		MMJJ_RS08875	0.21	-0.5
1,636,640	-		MMJJ_RS08875	0.21	-3.1
1,636,641	+		MMJJ_RS08875	0.21	+1.2
1,636,643	+		MMJJ_RS08875	0.22	+0.6
1,636,648	+		MMJJ_RS08875	0.22	-0.3
1,636,658	-		MMJJ_RS08875	0.22	-3.7
1,636,659	+		MMJJ_RS08875	0.22	+1.8
1,636,669	-		MMJJ_RS08875	0.23	+1.0
1,636,669	-		MMJJ_RS08875	0.23	+0.4
1,636,669	-		MMJJ_RS08875	0.23	-3.8
1,636,669	-		MMJJ_RS08875	0.23	-2.0
1,636,669	-		MMJJ_RS08875	0.23	-2.3
1,636,669	-		MMJJ_RS08875	0.23	-0.2
1,636,670	+		MMJJ_RS08875	0.23	+0.1
1,636,670	+		MMJJ_RS08875	0.23	-1.0
1,636,670	+		MMJJ_RS08875	0.23	+1.1
1,636,718	+		MMJJ_RS08875	0.26	-2.3
1,636,718	+		MMJJ_RS08875	0.26	+0.9
1,636,719	-		MMJJ_RS08875	0.26	-0.7
1,636,720	+		MMJJ_RS08875	0.26	+1.5
1,636,720	+		MMJJ_RS08875	0.26	-1.2
1,636,720	+		MMJJ_RS08875	0.26	+1.2
1,636,748	-		MMJJ_RS08875	0.27	+1.9
1,636,748	-		MMJJ_RS08875	0.27	+0.9
1,636,748	-		MMJJ_RS08875	0.27	+2.6
1,636,748	-		MMJJ_RS08875	0.27	+1.0
1,636,748	-		MMJJ_RS08875	0.27	+1.6
1,636,749	+		MMJJ_RS08875	0.27	+0.2
1,636,749	+		MMJJ_RS08875	0.27	+2.6
1,636,749	+		MMJJ_RS08875	0.27	+0.1
1,636,753	-		MMJJ_RS08875	0.28	+1.2
1,636,754	+		MMJJ_RS08875	0.28	-3.3
1,636,761	-		MMJJ_RS08875	0.28	-2.1
1,636,761	-		MMJJ_RS08875	0.28	-0.2
1,636,762	+		MMJJ_RS08875	0.28	+2.9
1,636,762	+		MMJJ_RS08875	0.28	-1.2
1,636,794	-		MMJJ_RS08875	0.30	-2.0
1,636,835	+		MMJJ_RS08875	0.32	-2.7
1,637,008	-		MMJJ_RS08875	0.41	-2.7
1,637,010	-		MMJJ_RS08875	0.41	-2.5
1,637,010	-		MMJJ_RS08875	0.41	-0.4
1,637,011	+		MMJJ_RS08875	0.42	+1.6
1,637,036	+		MMJJ_RS08875	0.43	-3.3
1,637,094	+		MMJJ_RS08875	0.46	-1.7
1,637,103	-		MMJJ_RS08875	0.47	+0.4
1,637,143	-		MMJJ_RS08875	0.49	-0.8
1,637,144	+		MMJJ_RS08875	0.49	-1.6
1,637,150	+		MMJJ_RS08875	0.49	+0.7
1,637,208	+		MMJJ_RS08875	0.52	+2.0
1,637,209	-		MMJJ_RS08875	0.52	-2.3
1,637,363	-		MMJJ_RS08875	0.61	-1.2
1,637,393	-		MMJJ_RS08875	0.62	-3.1
1,637,396	+		MMJJ_RS08875	0.62	+3.3
1,637,396	+		MMJJ_RS08875	0.62	+0.7
1,637,406	-		MMJJ_RS08875	0.63	-2.6
1,637,407	+		MMJJ_RS08875	0.63	-2.5
1,637,407	+		MMJJ_RS08875	0.63	-3.9
1,637,409	+		MMJJ_RS08875	0.63	-1.6
1,637,451	+		MMJJ_RS08875	0.65	-3.0
1,637,451	+		MMJJ_RS08875	0.65	-0.2
1,637,459	+		MMJJ_RS08875	0.66	+0.0
1,637,470	-		MMJJ_RS08875	0.66	+0.0
1,637,470	-		MMJJ_RS08875	0.66	-1.3
1,637,470	-		MMJJ_RS08875	0.66	-1.8
1,637,471	+		MMJJ_RS08875	0.66	+1.8
1,637,471	+		MMJJ_RS08875	0.66	+2.3
1,637,478	+		MMJJ_RS08875	0.67	-2.6
1,637,478	+		MMJJ_RS08875	0.67	-2.6
1,637,481	-		MMJJ_RS08875	0.67	-0.6
1,637,482	+		MMJJ_RS08875	0.67	+3.2
1,637,482	+		MMJJ_RS08875	0.67	-3.5
1,637,558	+		MMJJ_RS08875	0.71	+0.5
1,637,584	-		MMJJ_RS08875	0.73	+3.3
1,637,585	+		MMJJ_RS08875	0.73	+1.6
1,637,607	-		MMJJ_RS08875	0.74	-2.3
1,637,608	+		MMJJ_RS08875	0.74	-4.1
1,637,612	-		MMJJ_RS08875	0.74	-2.4
1,637,626	+		MMJJ_RS08875	0.75	-0.7
1,637,662	+		MMJJ_RS08875	0.77	-3.5
1,637,702	-		MMJJ_RS08875	0.79	-2.7
1,637,781	+		MMJJ_RS08875	0.83	-2.0
1,637,783	-		MMJJ_RS08875	0.83	+2.1
1,637,785	-		MMJJ_RS08875	0.83	-2.9
1,637,785	-		MMJJ_RS08875	0.83	+0.2
1,637,789	+		MMJJ_RS08875	0.84	+1.7
1,637,876	-		MMJJ_RS08875	0.88	-0.2
1,637,895	+		MMJJ_RS08875	0.89	-2.0
1,637,896	-		MMJJ_RS08875	0.89	-1.0
1,637,896	-		MMJJ_RS08875	0.89	+1.7
1,637,896	-		MMJJ_RS08875	0.89	+0.8
1,637,897	+		MMJJ_RS08875	0.90	-2.1
1,637,953	-				+1.2
1,637,988	+				-3.3
1,638,018	+				-1.2
1,638,024	-				-0.5
1,638,072	-				-3.7
1,638,072	-				+0.7
1,638,072	-				-0.7
1,638,072	-				-1.2
1,638,108	+				-3.7
1,638,123	-				-0.8
1,638,123	-				-3.7
1,638,123	-				-2.6
1,638,124	+				-2.1
1,638,128	-				-1.2
1,638,159	+				-1.7
1,638,216	-		MMJJ_RS08880	0.16	-3.6
1,638,264	-		MMJJ_RS08880	0.24	+2.1
1,638,264	-		MMJJ_RS08880	0.24	-1.0
1,638,265	+		MMJJ_RS08880	0.24	+1.8
1,638,267	+		MMJJ_RS08880	0.24	+1.6
1,638,267	+		MMJJ_RS08880	0.24	-1.2
1,638,304	+		MMJJ_RS08880	0.30	-5.1
1,638,310	+		MMJJ_RS08880	0.31	-1.2
1,638,376	-		MMJJ_RS08880	0.42	+1.9
1,638,402	-		MMJJ_RS08880	0.46	+1.7
1,638,475	-		MMJJ_RS08880	0.58	+0.8
1,638,476	+		MMJJ_RS08880	0.58	+0.8
1,638,476	+		MMJJ_RS08880	0.58	+2.2
1,638,501	-		MMJJ_RS08880	0.63	+1.1
1,638,501	-		MMJJ_RS08880	0.63	-3.4
1,638,596	-		MMJJ_RS08880	0.78	+1.7
1,638,672	+				-0.3
1,638,677	-				+2.3
1,638,677	-				-1.8
1,638,677	-				-1.7
1,638,677	-				-0.4
1,638,678	+				+1.2
1,638,678	+				-1.4
1,638,702	+				+1.0
1,638,731	-				+2.1
1,638,731	-				+1.0
1,638,749	-				+2.6
1,638,753	-				+0.9
1,638,766	+				+2.6
1,638,766	+				+2.6
1,638,766	+				+0.7
1,638,830	-				-0.1
1,638,861	-				+0.1
1,638,861	-				+0.9
1,638,882	-				-2.0
1,638,883	+				+2.5
1,638,963	-		MMJJ_RS08885	0.15	+2.0
1,638,987	-		MMJJ_RS08885	0.17	+0.6
1,638,994	+		MMJJ_RS08885	0.17	+3.2
1,639,018	+		MMJJ_RS08885	0.19	+1.8