Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08610

Experiment: McCas_formate_complete hypophosphite 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS08600 and MMJJ_RS08605 are separated by 59 nucleotidesMMJJ_RS08605 and MMJJ_RS08610 are separated by 4 nucleotidesMMJJ_RS08610 and MMJJ_RS08615 overlap by 14 nucleotides MMJJ_RS08600: MMJJ_RS08600 - transketolase family protein, at 1,583,638 to 1,584,576 _RS08600 MMJJ_RS08605: MMJJ_RS08605 - hypothetical protein, at 1,584,636 to 1,585,391 _RS08605 MMJJ_RS08610: MMJJ_RS08610 - oligosaccharide repeat unit polymerase family protein, at 1,585,396 to 1,586,469 _RS08610 MMJJ_RS08615: MMJJ_RS08615 - oligosaccharide repeat unit polymerase family protein, at 1,586,456 to 1,587,631 _RS08615 Position (kb) 1585 1586 1587Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1584.599 kb on - strandat 1584.604 kb on + strandat 1584.604 kb on + strandat 1584.976 kb on + strand, within MMJJ_RS08605at 1585.005 kb on + strand, within MMJJ_RS08605at 1585.009 kb on + strandat 1585.726 kb on + strand, within MMJJ_RS08610at 1586.417 kb on - strandat 1586.417 kb on - strandat 1586.533 kb on + strandat 1586.628 kb on - strand, within MMJJ_RS08615at 1586.629 kb on + strand, within MMJJ_RS08615at 1586.691 kb on - strand, within MMJJ_RS08615at 1586.775 kb on - strand, within MMJJ_RS08615at 1586.805 kb on - strand, within MMJJ_RS08615at 1586.806 kb on + strand, within MMJJ_RS08615at 1586.838 kb on + strand, within MMJJ_RS08615at 1586.871 kb on - strand, within MMJJ_RS08615at 1586.881 kb on + strand, within MMJJ_RS08615at 1586.881 kb on + strand, within MMJJ_RS08615at 1586.905 kb on + strand, within MMJJ_RS08615at 1586.905 kb on + strand, within MMJJ_RS08615at 1586.967 kb on - strand, within MMJJ_RS08615at 1587.020 kb on - strand, within MMJJ_RS08615at 1587.031 kb on + strand, within MMJJ_RS08615at 1587.081 kb on - strand, within MMJJ_RS08615at 1587.082 kb on + strand, within MMJJ_RS08615at 1587.103 kb on - strand, within MMJJ_RS08615at 1587.153 kb on - strand, within MMJJ_RS08615at 1587.154 kb on + strand, within MMJJ_RS08615at 1587.157 kb on - strandat 1587.273 kb on - strand, within MMJJ_RS08615at 1587.274 kb on + strand, within MMJJ_RS08615at 1587.283 kb on - strand, within MMJJ_RS08615at 1587.286 kb on + strand, within MMJJ_RS08615at 1587.323 kb on + strand, within MMJJ_RS08615at 1587.354 kb on - strand, within MMJJ_RS08615at 1587.354 kb on - strand, within MMJJ_RS08615at 1587.373 kb on - strand, within MMJJ_RS08615at 1587.374 kb on + strand, within MMJJ_RS08615at 1587.374 kb on + strand, within MMJJ_RS08615at 1587.374 kb on + strand, within MMJJ_RS08615at 1587.376 kb on - strand, within MMJJ_RS08615at 1587.377 kb on + strand, within MMJJ_RS08615at 1587.380 kb on + strand, within MMJJ_RS08615at 1587.405 kb on + strand, within MMJJ_RS08615at 1587.429 kb on - strand, within MMJJ_RS08615at 1587.445 kb on + strand, within MMJJ_RS08615at 1587.445 kb on + strand, within MMJJ_RS08615at 1587.460 kb on - strand, within MMJJ_RS08615at 1587.465 kb on - strand, within MMJJ_RS08615at 1587.466 kb on + strand, within MMJJ_RS08615

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM
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1,584,599 - -0.5
1,584,604 + -3.1
1,584,604 + -2.7
1,584,976 + MMJJ_RS08605 0.45 -1.5
1,585,005 + MMJJ_RS08605 0.49 +1.0
1,585,009 + -0.6
1,585,726 + MMJJ_RS08610 0.31 -1.2
1,586,417 - -0.8
1,586,417 - -0.5
1,586,533 + -0.5
1,586,628 - MMJJ_RS08615 0.15 +1.0
1,586,629 + MMJJ_RS08615 0.15 -3.3
1,586,691 - MMJJ_RS08615 0.20 -0.8
1,586,775 - MMJJ_RS08615 0.27 +0.4
1,586,805 - MMJJ_RS08615 0.30 +0.8
1,586,806 + MMJJ_RS08615 0.30 -0.4
1,586,838 + MMJJ_RS08615 0.32 -0.1
1,586,871 - MMJJ_RS08615 0.35 +2.2
1,586,881 + MMJJ_RS08615 0.36 -1.8
1,586,881 + MMJJ_RS08615 0.36 -2.8
1,586,905 + MMJJ_RS08615 0.38 -1.3
1,586,905 + MMJJ_RS08615 0.38 +2.3
1,586,967 - MMJJ_RS08615 0.43 -2.6
1,587,020 - MMJJ_RS08615 0.48 -1.0
1,587,031 + MMJJ_RS08615 0.49 -0.1
1,587,081 - MMJJ_RS08615 0.53 -1.2
1,587,082 + MMJJ_RS08615 0.53 -1.9
1,587,103 - MMJJ_RS08615 0.55 +0.4
1,587,153 - MMJJ_RS08615 0.59 -0.4
1,587,154 + MMJJ_RS08615 0.59 -2.7
1,587,157 - -0.6
1,587,273 - MMJJ_RS08615 0.69 -2.7
1,587,274 + MMJJ_RS08615 0.70 -1.3
1,587,283 - MMJJ_RS08615 0.70 -3.8
1,587,286 + MMJJ_RS08615 0.71 -2.0
1,587,323 + MMJJ_RS08615 0.74 -2.1
1,587,354 - MMJJ_RS08615 0.76 +0.2
1,587,354 - MMJJ_RS08615 0.76 -1.2
1,587,373 - MMJJ_RS08615 0.78 +2.0
1,587,374 + MMJJ_RS08615 0.78 -3.5
1,587,374 + MMJJ_RS08615 0.78 -3.0
1,587,374 + MMJJ_RS08615 0.78 +0.4
1,587,376 - MMJJ_RS08615 0.78 -0.1
1,587,377 + MMJJ_RS08615 0.78 -0.0
1,587,380 + MMJJ_RS08615 0.79 -2.1
1,587,405 + MMJJ_RS08615 0.81 +0.4
1,587,429 - MMJJ_RS08615 0.83 +1.6
1,587,445 + MMJJ_RS08615 0.84 -0.1
1,587,445 + MMJJ_RS08615 0.84 +0.4
1,587,460 - MMJJ_RS08615 0.85 -1.2
1,587,465 - MMJJ_RS08615 0.86 -3.0
1,587,466 + MMJJ_RS08615 0.86 -1.6

Or see this region's nucleotide sequence