Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05900

Experiment: McCas_formate_complete hypophosphite 62.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete hypophosphite 62.5 mM
1,096,862	-		MMJJ_RS05890	0.75	+1.3
1,096,863	+		MMJJ_RS05890	0.75	+3.1
1,096,863	+		MMJJ_RS05890	0.75	+1.5
1,096,863	+		MMJJ_RS05890	0.75	-0.4
1,096,864	-		MMJJ_RS05890	0.75	+0.8
1,096,865	+		MMJJ_RS05890	0.75	-0.1
1,096,883	-		MMJJ_RS05890	0.77	+2.3
1,096,883	-		MMJJ_RS05890	0.77	+0.7
1,096,884	+		MMJJ_RS05890	0.77	-4.3
1,096,884	+		MMJJ_RS05890	0.77	-2.3
1,096,884	+		MMJJ_RS05890	0.77	-2.1
1,096,913	+		MMJJ_RS05890	0.81	-1.9
1,096,924	-		MMJJ_RS05890	0.82	+1.0
1,096,924	-		MMJJ_RS05890	0.82	-0.2
1,096,945	-		MMJJ_RS05890	0.84	+0.7
1,096,945	-		MMJJ_RS05890	0.84	-4.1
1,096,968	+		MMJJ_RS05890	0.87	-1.0
1,097,013	-				+1.7
1,097,014	+				+2.2
1,097,014	+				-0.0
1,097,014	+				-1.1
1,097,017	-				+2.8
1,097,017	-				-1.6
1,097,018	+				+0.1
1,097,061	+				-0.0
1,097,078	+				-0.4
1,097,125	+				-2.0
1,097,150	+		MMJJ_RS05895	0.11	+1.0
1,097,155	+		MMJJ_RS05895	0.11	+0.2
1,097,207	-		MMJJ_RS05895	0.18	+0.7
1,097,216	+		MMJJ_RS05895	0.19	-1.0
1,097,221	+		MMJJ_RS05895	0.20	+0.3
1,097,226	-		MMJJ_RS05895	0.20	+1.0
1,097,227	+		MMJJ_RS05895	0.21	-1.1
1,097,228	-		MMJJ_RS05895	0.21	-1.7
1,097,228	-		MMJJ_RS05895	0.21	-1.2
1,097,228	-		MMJJ_RS05895	0.21	-0.4
1,097,228	-		MMJJ_RS05895	0.21	+1.4
1,097,229	+		MMJJ_RS05895	0.21	-1.0
1,097,229	+		MMJJ_RS05895	0.21	+2.8
1,097,229	+		MMJJ_RS05895	0.21	+2.2
1,097,229	+		MMJJ_RS05895	0.21	+0.6
1,097,229	+		MMJJ_RS05895	0.21	-1.1
1,097,229	+		MMJJ_RS05895	0.21	-0.8
1,097,276	+		MMJJ_RS05895	0.27	-2.5
1,097,276	+		MMJJ_RS05895	0.27	+1.4
1,097,297	-		MMJJ_RS05895	0.30	-1.3
1,097,322	-		MMJJ_RS05895	0.33	+1.0
1,097,323	+		MMJJ_RS05895	0.33	+0.9
1,097,332	+		MMJJ_RS05895	0.34	-1.1
1,097,332	+		MMJJ_RS05895	0.34	-1.0
1,097,332	+		MMJJ_RS05895	0.34	+0.4
1,097,332	+		MMJJ_RS05895	0.34	+0.7
1,097,340	-		MMJJ_RS05895	0.35	-1.4
1,097,341	+		MMJJ_RS05895	0.35	-2.1
1,097,341	+		MMJJ_RS05895	0.35	-0.0
1,097,344	-		MMJJ_RS05895	0.36	+0.9
1,097,345	+		MMJJ_RS05895	0.36	+2.9
1,097,346	-		MMJJ_RS05895	0.36	+0.1
1,097,383	+		MMJJ_RS05895	0.40	-0.0
1,097,434	+		MMJJ_RS05895	0.47	+1.5
1,097,440	+		MMJJ_RS05895	0.48	-1.7
1,097,440	+		MMJJ_RS05895	0.48	+1.2
1,097,442	-		MMJJ_RS05895	0.48	-1.8
1,097,442	-		MMJJ_RS05895	0.48	-0.3
1,097,446	-		MMJJ_RS05895	0.49	+0.9
1,097,449	-		MMJJ_RS05895	0.49	-0.9
1,097,454	-		MMJJ_RS05895	0.50	+0.5
1,097,466	-		MMJJ_RS05895	0.51	+1.6
1,097,467	+		MMJJ_RS05895	0.51	+0.6
1,097,505	-		MMJJ_RS05895	0.56	-0.6
1,097,508	-		MMJJ_RS05895	0.56	+0.2
1,097,508	-		MMJJ_RS05895	0.56	+0.9
1,097,508	-		MMJJ_RS05895	0.56	-0.1
1,097,508	-		MMJJ_RS05895	0.56	+0.6
1,097,508	-		MMJJ_RS05895	0.56	+2.2
1,097,508	-		MMJJ_RS05895	0.56	-1.5
1,097,509	+		MMJJ_RS05895	0.57	+0.7
1,097,509	+		MMJJ_RS05895	0.57	-1.8
1,097,509	+		MMJJ_RS05895	0.57	+1.1
1,097,509	+		MMJJ_RS05895	0.57	+1.2
1,097,527	-		MMJJ_RS05895	0.59	+1.1
1,097,528	+		MMJJ_RS05895	0.59	+2.0
1,097,528	+		MMJJ_RS05895	0.59	-0.1
1,097,531	+		MMJJ_RS05895	0.59	+0.1
1,097,540	-		MMJJ_RS05895	0.61	-0.3
1,097,541	+		MMJJ_RS05895	0.61	+0.5
1,097,567	-		MMJJ_RS05895	0.64	-0.2
1,097,568	+		MMJJ_RS05895	0.64	-0.9
1,097,587	-		MMJJ_RS05895	0.67	+0.6
1,097,635	-		MMJJ_RS05895	0.73	+3.1
1,097,635	-		MMJJ_RS05895	0.73	+2.0
1,097,635	-		MMJJ_RS05895	0.73	+0.1
1,097,636	+		MMJJ_RS05895	0.73	-0.3
1,097,636	+		MMJJ_RS05895	0.73	+0.2
1,097,636	+		MMJJ_RS05895	0.73	+1.6
1,097,638	+		MMJJ_RS05895	0.73	-0.8
1,097,657	+		MMJJ_RS05895	0.75	-0.6
1,097,657	+		MMJJ_RS05895	0.75	-0.4
1,097,699	-		MMJJ_RS05895	0.81	+0.6
1,097,699	-		MMJJ_RS05895	0.81	+0.7
1,097,699	-		MMJJ_RS05895	0.81	+1.1
1,097,699	-		MMJJ_RS05895	0.81	+0.4
1,097,699	-		MMJJ_RS05895	0.81	-1.1
1,097,700	+		MMJJ_RS05895	0.81	+3.4
1,097,700	+		MMJJ_RS05895	0.81	-1.0
1,097,700	+		MMJJ_RS05895	0.81	-1.4
1,097,705	-		MMJJ_RS05895	0.82	+0.1
1,097,705	-		MMJJ_RS05895	0.82	+1.9
1,097,706	+		MMJJ_RS05895	0.82	+1.0
1,097,706	+		MMJJ_RS05895	0.82	+2.6
1,097,706	+		MMJJ_RS05895	0.82	-0.4
1,097,706	+		MMJJ_RS05895	0.82	+0.2
1,097,706	+		MMJJ_RS05895	0.82	+1.5
1,097,724	-		MMJJ_RS05895	0.84	-0.7
1,097,737	+		MMJJ_RS05895	0.86	+1.8
1,097,737	+		MMJJ_RS05895	0.86	-0.1
1,097,748	+		MMJJ_RS05895	0.87	-0.2
1,097,791	+				-3.6
1,097,791	+				-0.3
1,097,892	-				+0.7
1,097,898	+				-1.5
1,097,908	+				+0.2
1,097,932	-				-0.1
1,097,933	+				+0.8
1,097,937	+				+3.3
1,097,971	+		MMJJ_RS05900	0.12	+1.2
1,097,999	+		MMJJ_RS05900	0.15	+1.0
1,098,021	+		MMJJ_RS05900	0.17	-0.7
1,098,042	+		MMJJ_RS05900	0.19	-1.1
1,098,069	-		MMJJ_RS05900	0.21	-0.4
1,098,070	+		MMJJ_RS05900	0.21	-2.1
1,098,071	-		MMJJ_RS05900	0.21	+0.9
1,098,071	-		MMJJ_RS05900	0.21	+1.2
1,098,071	-		MMJJ_RS05900	0.21	-2.7
1,098,071	-		MMJJ_RS05900	0.21	+0.1
1,098,071	-		MMJJ_RS05900	0.21	-0.3
1,098,071	-		MMJJ_RS05900	0.21	-0.6
1,098,071	-		MMJJ_RS05900	0.21	+0.1
1,098,072	+		MMJJ_RS05900	0.21	-3.1
1,098,072	+		MMJJ_RS05900	0.21	+1.2
1,098,072	+		MMJJ_RS05900	0.21	-0.6
1,098,072	+		MMJJ_RS05900	0.21	+0.3
1,098,072	+		MMJJ_RS05900	0.21	+0.1
1,098,072	+		MMJJ_RS05900	0.21	-1.4
1,098,075	-		MMJJ_RS05900	0.22	+1.1
1,098,078	+		MMJJ_RS05900	0.22	-3.0
1,098,091	-		MMJJ_RS05900	0.23	-3.8
1,098,091	-		MMJJ_RS05900	0.23	-1.1
1,098,092	+		MMJJ_RS05900	0.23	+1.3
1,098,126	-		MMJJ_RS05900	0.26	-0.6
1,098,126	-		MMJJ_RS05900	0.26	-0.8
1,098,134	+		MMJJ_RS05900	0.27	-0.9
1,098,286	+		MMJJ_RS05900	0.42	-0.1
1,098,340	+		MMJJ_RS05900	0.47	-0.4
1,098,345	-		MMJJ_RS05900	0.47	-1.2
1,098,401	-		MMJJ_RS05900	0.52	+0.0
1,098,402	+		MMJJ_RS05900	0.52	-0.0
1,098,410	-		MMJJ_RS05900	0.53	+0.4
1,098,411	+		MMJJ_RS05900	0.53	+0.4
1,098,447	-		MMJJ_RS05900	0.57	+0.8
1,098,447	-		MMJJ_RS05900	0.57	+1.6
1,098,459	+		MMJJ_RS05900	0.58	-1.2
1,098,459	+		MMJJ_RS05900	0.58	+0.5
1,098,479	+		MMJJ_RS05900	0.60	+0.5
1,098,503	-		MMJJ_RS05900	0.62	+0.0
1,098,589	+		MMJJ_RS05900	0.70	-2.3
1,098,620	-		MMJJ_RS05900	0.73	-1.1
1,098,620	-		MMJJ_RS05900	0.73	-1.2
1,098,620	-		MMJJ_RS05900	0.73	+1.5
1,098,621	+		MMJJ_RS05900	0.73	+0.1
1,098,622	-		MMJJ_RS05900	0.73	-0.6
1,098,656	-		MMJJ_RS05900	0.76	+2.5
1,098,662	-		MMJJ_RS05900	0.77	+0.6
1,098,681	-		MMJJ_RS05900	0.79	-0.5
1,098,681	-				+2.2
1,098,684	+		MMJJ_RS05900	0.79	-0.4
1,098,696	+		MMJJ_RS05900	0.80	+1.7
1,098,725	-		MMJJ_RS05900	0.83	+0.4
1,098,803	-				+1.7
1,098,804	+				-0.9
1,098,900	+				+0.2
1,098,900	+				-0.4
1,098,904	-				-1.1
1,098,905	+				-0.3
1,098,920	-				+0.9
1,099,197	+				+0.6
1,099,489	-		MMJJ_RS05905	0.49	-1.3
1,099,540	-		MMJJ_RS05905	0.53	-1.6
1,099,800	+		MMJJ_RS05905	0.75	+5.3