Experiment: McCas_formate_complete hypophosphite 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04825 and MMJJ_RS04830 are separated by 7 nucleotides MMJJ_RS04830 and MMJJ_RS04835 are separated by 3 nucleotides MMJJ_RS04835 and MMJJ_RS04840 overlap by 10 nucleotides
MMJJ_RS04825: MMJJ_RS04825 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 903,790 to 905,070
_RS04825
MMJJ_RS04830: MMJJ_RS04830 - zinc dependent phospholipase C family protein, at 905,078 to 905,617
_RS04830
MMJJ_RS04835: MMJJ_RS04835 - ABC transporter ATP-binding protein, at 905,621 to 906,589
_RS04835
MMJJ_RS04840: MMJJ_RS04840 - iron ABC transporter permease, at 906,580 to 908,217
_RS04840
Position (kb) 905
906 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 904.084 kb on - strand, within MMJJ_RS04825 at 904.088 kb on - strand, within MMJJ_RS04825 at 904.119 kb on - strand, within MMJJ_RS04825 at 904.119 kb on - strand, within MMJJ_RS04825 at 904.125 kb on - strand, within MMJJ_RS04825 at 904.134 kb on - strand, within MMJJ_RS04825 at 904.137 kb on + strand, within MMJJ_RS04825 at 904.151 kb on - strand, within MMJJ_RS04825 at 904.152 kb on + strand, within MMJJ_RS04825 at 904.162 kb on + strand, within MMJJ_RS04825 at 904.163 kb on - strand, within MMJJ_RS04825 at 904.163 kb on - strand, within MMJJ_RS04825 at 904.164 kb on + strand, within MMJJ_RS04825 at 904.200 kb on - strand, within MMJJ_RS04825 at 904.205 kb on - strand, within MMJJ_RS04825 at 904.206 kb on + strand, within MMJJ_RS04825 at 904.206 kb on + strand, within MMJJ_RS04825 at 904.206 kb on + strand, within MMJJ_RS04825 at 904.206 kb on + strand, within MMJJ_RS04825 at 904.206 kb on + strand, within MMJJ_RS04825 at 904.206 kb on + strand, within MMJJ_RS04825 at 904.210 kb on - strand, within MMJJ_RS04825 at 904.211 kb on + strand, within MMJJ_RS04825 at 904.211 kb on + strand, within MMJJ_RS04825 at 904.221 kb on - strand, within MMJJ_RS04825 at 904.222 kb on + strand, within MMJJ_RS04825 at 904.231 kb on + strand, within MMJJ_RS04825 at 904.242 kb on + strand, within MMJJ_RS04825 at 904.269 kb on - strand, within MMJJ_RS04825 at 904.274 kb on - strand, within MMJJ_RS04825 at 904.349 kb on - strand, within MMJJ_RS04825 at 904.390 kb on + strand, within MMJJ_RS04825 at 904.390 kb on + strand, within MMJJ_RS04825 at 904.393 kb on - strand, within MMJJ_RS04825 at 904.438 kb on + strand, within MMJJ_RS04825 at 904.482 kb on - strand, within MMJJ_RS04825 at 904.483 kb on + strand, within MMJJ_RS04825 at 904.503 kb on - strand, within MMJJ_RS04825 at 904.503 kb on - strand, within MMJJ_RS04825 at 904.504 kb on + strand, within MMJJ_RS04825 at 904.511 kb on - strand, within MMJJ_RS04825 at 904.512 kb on + strand, within MMJJ_RS04825 at 904.527 kb on - strand, within MMJJ_RS04825 at 904.527 kb on - strand, within MMJJ_RS04825 at 904.528 kb on + strand, within MMJJ_RS04825 at 904.528 kb on + strand, within MMJJ_RS04825 at 904.603 kb on - strand, within MMJJ_RS04825 at 904.604 kb on + strand, within MMJJ_RS04825 at 904.707 kb on - strand, within MMJJ_RS04825 at 904.725 kb on - strand, within MMJJ_RS04825 at 904.726 kb on + strand, within MMJJ_RS04825 at 904.752 kb on - strand, within MMJJ_RS04825 at 904.752 kb on - strand, within MMJJ_RS04825 at 904.753 kb on + strand, within MMJJ_RS04825 at 904.794 kb on - strand, within MMJJ_RS04825 at 904.797 kb on - strand, within MMJJ_RS04825 at 904.798 kb on + strand, within MMJJ_RS04825 at 904.815 kb on - strand, within MMJJ_RS04825 at 904.816 kb on + strand, within MMJJ_RS04825 at 904.835 kb on - strand, within MMJJ_RS04825 at 904.836 kb on + strand, within MMJJ_RS04825 at 904.836 kb on + strand, within MMJJ_RS04825 at 904.839 kb on + strand, within MMJJ_RS04825 at 904.868 kb on - strand, within MMJJ_RS04825 at 904.869 kb on + strand, within MMJJ_RS04825 at 904.884 kb on - strand, within MMJJ_RS04825 at 904.937 kb on - strand, within MMJJ_RS04825 at 904.968 kb on + strand at 904.968 kb on + strand at 904.971 kb on + strand at 904.974 kb on + strand at 904.981 kb on + strand at 904.999 kb on - strand at 905.000 kb on + strand at 905.000 kb on + strand at 905.000 kb on + strand at 905.000 kb on + strand at 905.004 kb on - strand at 905.004 kb on - strand at 905.004 kb on - strand at 905.004 kb on - strand at 905.005 kb on + strand at 905.005 kb on + strand at 905.032 kb on - strand at 905.032 kb on - strand at 905.033 kb on + strand at 905.033 kb on + strand at 905.035 kb on + strand at 905.069 kb on + strand at 905.072 kb on - strand at 905.078 kb on + strand at 905.088 kb on - strand at 905.090 kb on - strand at 905.155 kb on + strand, within MMJJ_RS04830 at 905.269 kb on - strand, within MMJJ_RS04830 at 905.306 kb on + strand, within MMJJ_RS04830 at 905.306 kb on + strand, within MMJJ_RS04830 at 905.306 kb on + strand, within MMJJ_RS04830 at 905.306 kb on + strand, within MMJJ_RS04830 at 905.317 kb on + strand, within MMJJ_RS04830 at 905.339 kb on - strand, within MMJJ_RS04830 at 905.340 kb on + strand, within MMJJ_RS04830 at 905.340 kb on + strand, within MMJJ_RS04830 at 905.346 kb on - strand, within MMJJ_RS04830 at 905.359 kb on - strand, within MMJJ_RS04830 at 905.364 kb on - strand, within MMJJ_RS04830 at 905.364 kb on - strand, within MMJJ_RS04830 at 905.419 kb on - strand, within MMJJ_RS04830 at 905.420 kb on + strand, within MMJJ_RS04830 at 905.456 kb on + strand, within MMJJ_RS04830 at 905.494 kb on - strand, within MMJJ_RS04830 at 905.496 kb on - strand, within MMJJ_RS04830 at 905.496 kb on - strand, within MMJJ_RS04830 at 905.506 kb on - strand, within MMJJ_RS04830 at 905.507 kb on + strand, within MMJJ_RS04830 at 905.507 kb on + strand, within MMJJ_RS04830 at 905.591 kb on - strand at 905.591 kb on - strand at 905.591 kb on - strand at 905.611 kb on + strand at 905.633 kb on - strand at 905.692 kb on - strand at 905.692 kb on - strand at 905.729 kb on - strand, within MMJJ_RS04835 at 905.730 kb on + strand, within MMJJ_RS04835 at 905.730 kb on + strand, within MMJJ_RS04835 at 905.731 kb on - strand, within MMJJ_RS04835 at 905.731 kb on - strand, within MMJJ_RS04835 at 905.732 kb on + strand, within MMJJ_RS04835 at 905.736 kb on - strand, within MMJJ_RS04835 at 905.736 kb on - strand, within MMJJ_RS04835 at 905.737 kb on + strand, within MMJJ_RS04835 at 905.737 kb on + strand, within MMJJ_RS04835 at 905.737 kb on + strand, within MMJJ_RS04835 at 905.737 kb on + strand, within MMJJ_RS04835 at 905.741 kb on - strand, within MMJJ_RS04835 at 905.742 kb on + strand, within MMJJ_RS04835 at 905.804 kb on - strand, within MMJJ_RS04835 at 905.804 kb on - strand, within MMJJ_RS04835 at 905.804 kb on - strand, within MMJJ_RS04835 at 905.820 kb on + strand, within MMJJ_RS04835 at 905.858 kb on + strand, within MMJJ_RS04835 at 905.861 kb on - strand, within MMJJ_RS04835 at 905.861 kb on - strand, within MMJJ_RS04835 at 905.862 kb on + strand, within MMJJ_RS04835 at 905.864 kb on - strand, within MMJJ_RS04835 at 905.887 kb on - strand, within MMJJ_RS04835 at 905.932 kb on + strand, within MMJJ_RS04835 at 905.935 kb on - strand, within MMJJ_RS04835 at 905.971 kb on - strand, within MMJJ_RS04835 at 905.989 kb on - strand, within MMJJ_RS04835 at 905.989 kb on - strand, within MMJJ_RS04835 at 905.989 kb on - strand, within MMJJ_RS04835 at 905.989 kb on - strand, within MMJJ_RS04835 at 905.990 kb on + strand, within MMJJ_RS04835 at 906.026 kb on - strand, within MMJJ_RS04835 at 906.030 kb on - strand, within MMJJ_RS04835 at 906.031 kb on + strand, within MMJJ_RS04835 at 906.031 kb on + strand, within MMJJ_RS04835 at 906.203 kb on + strand, within MMJJ_RS04835 at 906.357 kb on + strand, within MMJJ_RS04835 at 906.359 kb on - strand, within MMJJ_RS04835
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM remove 904,084 - MMJJ_RS04825 0.23 -3.3 904,088 - MMJJ_RS04825 0.23 +1.2 904,119 - MMJJ_RS04825 0.26 -2.3 904,119 - MMJJ_RS04825 0.26 +1.6 904,125 - MMJJ_RS04825 0.26 +2.4 904,134 - MMJJ_RS04825 0.27 +1.0 904,137 + MMJJ_RS04825 0.27 +0.8 904,151 - MMJJ_RS04825 0.28 +0.9 904,152 + MMJJ_RS04825 0.28 -0.1 904,162 + MMJJ_RS04825 0.29 -0.8 904,163 - MMJJ_RS04825 0.29 -0.3 904,163 - MMJJ_RS04825 0.29 +0.2 904,164 + MMJJ_RS04825 0.29 +0.5 904,200 - MMJJ_RS04825 0.32 -1.0 904,205 - MMJJ_RS04825 0.32 -1.6 904,206 + MMJJ_RS04825 0.32 +1.5 904,206 + MMJJ_RS04825 0.32 +1.5 904,206 + MMJJ_RS04825 0.32 +0.8 904,206 + MMJJ_RS04825 0.32 +0.3 904,206 + MMJJ_RS04825 0.32 -0.6 904,206 + MMJJ_RS04825 0.32 -1.6 904,210 - MMJJ_RS04825 0.33 -1.2 904,211 + MMJJ_RS04825 0.33 +1.9 904,211 + MMJJ_RS04825 0.33 -2.1 904,221 - MMJJ_RS04825 0.34 +0.2 904,222 + MMJJ_RS04825 0.34 +0.3 904,231 + MMJJ_RS04825 0.34 -0.3 904,242 + MMJJ_RS04825 0.35 -0.7 904,269 - MMJJ_RS04825 0.37 +1.5 904,274 - MMJJ_RS04825 0.38 +0.3 904,349 - MMJJ_RS04825 0.44 +3.3 904,390 + MMJJ_RS04825 0.47 +0.6 904,390 + MMJJ_RS04825 0.47 +1.5 904,393 - MMJJ_RS04825 0.47 +0.0 904,438 + MMJJ_RS04825 0.51 +0.4 904,482 - MMJJ_RS04825 0.54 -1.1 904,483 + MMJJ_RS04825 0.54 +2.3 904,503 - MMJJ_RS04825 0.56 +1.6 904,503 - MMJJ_RS04825 0.56 -2.1 904,504 + MMJJ_RS04825 0.56 -0.6 904,511 - MMJJ_RS04825 0.56 +2.0 904,512 + MMJJ_RS04825 0.56 +0.1 904,527 - MMJJ_RS04825 0.58 +1.4 904,527 - MMJJ_RS04825 0.58 +4.3 904,528 + MMJJ_RS04825 0.58 +1.6 904,528 + MMJJ_RS04825 0.58 +0.5 904,603 - MMJJ_RS04825 0.63 +0.9 904,604 + MMJJ_RS04825 0.64 +3.0 904,707 - MMJJ_RS04825 0.72 +0.9 904,725 - MMJJ_RS04825 0.73 +1.0 904,726 + MMJJ_RS04825 0.73 +0.3 904,752 - MMJJ_RS04825 0.75 -0.9 904,752 - MMJJ_RS04825 0.75 +1.3 904,753 + MMJJ_RS04825 0.75 -3.2 904,794 - MMJJ_RS04825 0.78 +1.1 904,797 - MMJJ_RS04825 0.79 +1.4 904,798 + MMJJ_RS04825 0.79 +0.6 904,815 - MMJJ_RS04825 0.80 -3.1 904,816 + MMJJ_RS04825 0.80 +2.1 904,835 - MMJJ_RS04825 0.82 +1.2 904,836 + MMJJ_RS04825 0.82 -0.7 904,836 + MMJJ_RS04825 0.82 -0.3 904,839 + MMJJ_RS04825 0.82 -3.8 904,868 - MMJJ_RS04825 0.84 +0.6 904,869 + MMJJ_RS04825 0.84 +1.0 904,884 - MMJJ_RS04825 0.85 +1.1 904,937 - MMJJ_RS04825 0.90 +1.0 904,968 + +1.1 904,968 + +0.1 904,971 + -0.9 904,974 + +0.7 904,981 + -2.7 904,999 - -1.6 905,000 + +0.3 905,000 + -0.9 905,000 + -1.7 905,000 + -0.2 905,004 - -0.7 905,004 - +0.1 905,004 - -2.2 905,004 - -0.4 905,005 + -0.1 905,005 + -0.4 905,032 - +1.1 905,032 - -3.0 905,033 + +2.6 905,033 + +1.8 905,035 + +1.1 905,069 + -0.4 905,072 - +1.9 905,078 + -3.5 905,088 - +2.3 905,090 - -1.2 905,155 + MMJJ_RS04830 0.14 +0.3 905,269 - MMJJ_RS04830 0.35 +1.0 905,306 + MMJJ_RS04830 0.42 +0.4 905,306 + MMJJ_RS04830 0.42 +0.1 905,306 + MMJJ_RS04830 0.42 +1.5 905,306 + MMJJ_RS04830 0.42 -2.8 905,317 + MMJJ_RS04830 0.44 +3.7 905,339 - MMJJ_RS04830 0.48 -0.1 905,340 + MMJJ_RS04830 0.49 +0.4 905,340 + MMJJ_RS04830 0.49 -1.2 905,346 - MMJJ_RS04830 0.50 +1.7 905,359 - MMJJ_RS04830 0.52 +1.1 905,364 - MMJJ_RS04830 0.53 +0.9 905,364 - MMJJ_RS04830 0.53 -4.6 905,419 - MMJJ_RS04830 0.63 +0.5 905,420 + MMJJ_RS04830 0.63 +1.7 905,456 + MMJJ_RS04830 0.70 -3.2 905,494 - MMJJ_RS04830 0.77 -1.1 905,496 - MMJJ_RS04830 0.77 +1.5 905,496 - MMJJ_RS04830 0.77 -4.5 905,506 - MMJJ_RS04830 0.79 +0.1 905,507 + MMJJ_RS04830 0.79 +0.5 905,507 + MMJJ_RS04830 0.79 +0.2 905,591 - -0.1 905,591 - +0.7 905,591 - -3.6 905,611 + -4.2 905,633 - +0.5 905,692 - +0.7 905,692 - +0.4 905,729 - MMJJ_RS04835 0.11 -1.2 905,730 + MMJJ_RS04835 0.11 -1.1 905,730 + MMJJ_RS04835 0.11 -0.0 905,731 - MMJJ_RS04835 0.11 -0.4 905,731 - MMJJ_RS04835 0.11 -1.6 905,732 + MMJJ_RS04835 0.11 -4.3 905,736 - MMJJ_RS04835 0.12 +2.5 905,736 - MMJJ_RS04835 0.12 +1.6 905,737 + MMJJ_RS04835 0.12 +1.7 905,737 + MMJJ_RS04835 0.12 -1.5 905,737 + MMJJ_RS04835 0.12 +0.0 905,737 + MMJJ_RS04835 0.12 +0.7 905,741 - MMJJ_RS04835 0.12 -0.8 905,742 + MMJJ_RS04835 0.12 -0.4 905,804 - MMJJ_RS04835 0.19 +0.7 905,804 - MMJJ_RS04835 0.19 -1.1 905,804 - MMJJ_RS04835 0.19 +1.1 905,820 + MMJJ_RS04835 0.21 +0.9 905,858 + MMJJ_RS04835 0.24 +1.1 905,861 - MMJJ_RS04835 0.25 +0.2 905,861 - MMJJ_RS04835 0.25 +0.4 905,862 + MMJJ_RS04835 0.25 +0.8 905,864 - MMJJ_RS04835 0.25 -0.4 905,887 - MMJJ_RS04835 0.27 +0.7 905,932 + MMJJ_RS04835 0.32 +0.7 905,935 - MMJJ_RS04835 0.32 -0.6 905,971 - MMJJ_RS04835 0.36 +0.3 905,989 - MMJJ_RS04835 0.38 -3.6 905,989 - MMJJ_RS04835 0.38 -1.0 905,989 - MMJJ_RS04835 0.38 -0.1 905,989 - MMJJ_RS04835 0.38 +1.0 905,990 + MMJJ_RS04835 0.38 -0.1 906,026 - MMJJ_RS04835 0.42 +0.4 906,030 - MMJJ_RS04835 0.42 -1.2 906,031 + MMJJ_RS04835 0.42 -0.1 906,031 + MMJJ_RS04835 0.42 -1.3 906,203 + MMJJ_RS04835 0.60 +0.7 906,357 + MMJJ_RS04835 0.76 +1.0 906,359 - MMJJ_RS04835 0.76 -0.6
Or see this region's nucleotide sequence