Experiment: McCas_formate_complete hypophosphite 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04255 and MMJJ_RS04260 are separated by 819 nucleotides MMJJ_RS04260 and MMJJ_RS04265 are separated by 26 nucleotides MMJJ_RS04265 and MMJJ_RS04270 are separated by 17 nucleotides
MMJJ_RS04255: MMJJ_RS04255 - permease, at 791,682 to 792,638
_RS04255
MMJJ_RS04260: MMJJ_RS04260 - molybdopterin molybdotransferase MoeA, at 793,458 to 794,585
_RS04260
MMJJ_RS04265: MMJJ_RS04265 - FmdE family protein, at 794,612 to 795,196
_RS04265
MMJJ_RS04270: MMJJ_RS04270 - DUF364 domain-containing protein, at 795,214 to 795,990
_RS04270
Position (kb) 793
794
795 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 792.473 kb on + strand, within MMJJ_RS04255 at 792.479 kb on - strand, within MMJJ_RS04255 at 792.480 kb on + strand, within MMJJ_RS04255 at 792.484 kb on - strand, within MMJJ_RS04255 at 792.485 kb on + strand, within MMJJ_RS04255 at 792.485 kb on + strand, within MMJJ_RS04255 at 792.504 kb on + strand, within MMJJ_RS04255 at 792.507 kb on + strand, within MMJJ_RS04255 at 792.516 kb on - strand, within MMJJ_RS04255 at 792.517 kb on + strand, within MMJJ_RS04255 at 792.517 kb on + strand, within MMJJ_RS04255 at 792.538 kb on - strand, within MMJJ_RS04255 at 792.538 kb on - strand, within MMJJ_RS04255 at 792.539 kb on + strand, within MMJJ_RS04255 at 792.539 kb on + strand, within MMJJ_RS04255 at 792.578 kb on - strand at 792.578 kb on - strand at 792.601 kb on + strand at 792.605 kb on - strand at 792.605 kb on - strand at 792.605 kb on - strand at 792.605 kb on - strand at 792.606 kb on + strand at 792.607 kb on - strand at 792.607 kb on - strand at 792.608 kb on + strand at 792.608 kb on + strand at 792.608 kb on + strand at 792.624 kb on - strand at 792.625 kb on + strand at 792.659 kb on - strand at 792.659 kb on - strand at 792.660 kb on + strand at 792.660 kb on + strand at 792.680 kb on - strand at 792.681 kb on + strand at 792.681 kb on + strand at 792.689 kb on - strand at 792.723 kb on - strand at 792.740 kb on - strand at 792.744 kb on - strand at 792.744 kb on - strand at 792.744 kb on - strand at 792.745 kb on + strand at 792.745 kb on + strand at 792.746 kb on - strand at 792.746 kb on - strand at 792.746 kb on - strand at 792.747 kb on + strand at 792.747 kb on + strand at 792.747 kb on + strand at 792.749 kb on - strand at 792.750 kb on + strand at 792.751 kb on - strand at 792.752 kb on + strand at 792.752 kb on + strand at 792.792 kb on - strand at 792.792 kb on - strand at 792.793 kb on + strand at 792.793 kb on + strand at 792.794 kb on - strand at 792.794 kb on - strand at 792.794 kb on - strand at 792.794 kb on - strand at 792.794 kb on - strand at 792.794 kb on - strand at 792.794 kb on - strand at 792.794 kb on - strand at 792.794 kb on - strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.795 kb on + strand at 792.796 kb on - strand at 792.796 kb on - strand at 792.797 kb on + strand at 792.797 kb on + strand at 792.797 kb on + strand at 792.797 kb on + strand at 792.797 kb on + strand at 792.797 kb on + strand at 792.847 kb on - strand at 792.848 kb on + strand at 792.851 kb on - strand at 792.852 kb on + strand at 792.878 kb on - strand at 792.904 kb on + strand at 792.954 kb on + strand at 792.969 kb on - strand at 792.969 kb on - strand at 792.975 kb on - strand at 792.976 kb on + strand at 792.978 kb on - strand at 792.979 kb on + strand at 792.979 kb on + strand at 792.979 kb on + strand at 793.002 kb on - strand at 793.003 kb on + strand at 793.003 kb on + strand at 793.007 kb on - strand at 793.008 kb on + strand at 793.009 kb on - strand at 793.009 kb on - strand at 793.010 kb on + strand at 793.016 kb on - strand at 793.017 kb on + strand at 793.035 kb on - strand at 793.036 kb on + strand at 793.064 kb on - strand at 793.064 kb on - strand at 793.065 kb on + strand at 793.101 kb on - strand at 793.101 kb on - strand at 793.102 kb on + strand at 793.118 kb on - strand at 793.118 kb on - strand at 793.119 kb on + strand at 793.119 kb on + strand at 793.120 kb on - strand at 793.120 kb on - strand at 793.120 kb on - strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.135 kb on + strand at 793.140 kb on + strand at 793.143 kb on - strand at 793.151 kb on - strand at 793.151 kb on - strand at 793.152 kb on + strand at 793.152 kb on + strand at 793.152 kb on + strand at 793.153 kb on - strand at 793.154 kb on + strand at 793.154 kb on + strand at 793.154 kb on + strand at 793.164 kb on - strand at 793.164 kb on - strand at 793.164 kb on - strand at 793.165 kb on + strand at 793.165 kb on + strand at 793.165 kb on + strand at 793.165 kb on + strand at 793.165 kb on + strand at 793.166 kb on - strand at 793.167 kb on + strand at 793.167 kb on + strand at 793.250 kb on - strand at 793.251 kb on + strand at 793.254 kb on - strand at 793.254 kb on - strand at 793.260 kb on - strand at 793.261 kb on + strand at 793.261 kb on + strand at 793.289 kb on - strand at 793.394 kb on - strand at 793.394 kb on - strand at 793.403 kb on - strand at 793.430 kb on - strand at 793.437 kb on + strand at 793.454 kb on + strand at 793.456 kb on - strand at 793.494 kb on - strand at 793.544 kb on - strand at 793.544 kb on - strand at 793.545 kb on + strand at 793.545 kb on + strand at 793.725 kb on - strand, within MMJJ_RS04260 at 793.725 kb on - strand, within MMJJ_RS04260 at 793.758 kb on - strand, within MMJJ_RS04260 at 793.758 kb on - strand, within MMJJ_RS04260 at 793.758 kb on - strand, within MMJJ_RS04260 at 793.759 kb on + strand at 793.759 kb on + strand, within MMJJ_RS04260 at 793.759 kb on + strand, within MMJJ_RS04260 at 793.759 kb on + strand, within MMJJ_RS04260 at 793.759 kb on + strand, within MMJJ_RS04260 at 793.761 kb on - strand, within MMJJ_RS04260 at 793.762 kb on + strand, within MMJJ_RS04260 at 793.762 kb on + strand, within MMJJ_RS04260 at 793.791 kb on - strand, within MMJJ_RS04260 at 793.815 kb on - strand, within MMJJ_RS04260 at 793.815 kb on - strand, within MMJJ_RS04260 at 793.849 kb on + strand, within MMJJ_RS04260 at 793.850 kb on - strand, within MMJJ_RS04260 at 793.851 kb on + strand, within MMJJ_RS04260 at 793.865 kb on + strand, within MMJJ_RS04260 at 793.875 kb on + strand, within MMJJ_RS04260 at 793.900 kb on + strand, within MMJJ_RS04260 at 793.900 kb on + strand, within MMJJ_RS04260 at 793.907 kb on - strand, within MMJJ_RS04260 at 793.907 kb on - strand, within MMJJ_RS04260 at 793.908 kb on + strand, within MMJJ_RS04260 at 793.912 kb on - strand, within MMJJ_RS04260 at 793.912 kb on - strand, within MMJJ_RS04260 at 793.913 kb on + strand, within MMJJ_RS04260 at 793.917 kb on - strand, within MMJJ_RS04260 at 793.917 kb on - strand, within MMJJ_RS04260 at 793.918 kb on + strand, within MMJJ_RS04260 at 793.939 kb on - strand, within MMJJ_RS04260 at 793.939 kb on - strand, within MMJJ_RS04260 at 793.939 kb on - strand, within MMJJ_RS04260 at 793.939 kb on - strand, within MMJJ_RS04260 at 793.940 kb on + strand, within MMJJ_RS04260 at 793.940 kb on + strand, within MMJJ_RS04260 at 793.940 kb on + strand, within MMJJ_RS04260 at 794.032 kb on + strand, within MMJJ_RS04260 at 794.101 kb on + strand, within MMJJ_RS04260 at 794.190 kb on + strand, within MMJJ_RS04260 at 794.259 kb on - strand, within MMJJ_RS04260 at 794.417 kb on - strand, within MMJJ_RS04260 at 794.418 kb on + strand, within MMJJ_RS04260 at 794.429 kb on + strand, within MMJJ_RS04260 at 794.476 kb on - strand at 794.537 kb on - strand at 794.538 kb on + strand at 794.553 kb on - strand at 794.591 kb on - strand at 794.591 kb on - strand at 794.591 kb on - strand at 794.591 kb on - strand at 794.592 kb on + strand at 794.592 kb on + strand at 794.647 kb on - strand at 794.648 kb on + strand at 794.700 kb on + strand, within MMJJ_RS04265 at 794.757 kb on - strand, within MMJJ_RS04265 at 794.761 kb on - strand, within MMJJ_RS04265 at 794.762 kb on + strand, within MMJJ_RS04265 at 794.762 kb on + strand, within MMJJ_RS04265 at 794.819 kb on + strand, within MMJJ_RS04265 at 794.835 kb on - strand, within MMJJ_RS04265 at 794.863 kb on - strand, within MMJJ_RS04265 at 794.890 kb on - strand, within MMJJ_RS04265 at 794.978 kb on + strand, within MMJJ_RS04265 at 795.019 kb on - strand, within MMJJ_RS04265 at 795.020 kb on + strand, within MMJJ_RS04265 at 795.056 kb on - strand, within MMJJ_RS04265 at 795.056 kb on - strand, within MMJJ_RS04265 at 795.057 kb on + strand, within MMJJ_RS04265 at 795.057 kb on + strand, within MMJJ_RS04265 at 795.057 kb on + strand, within MMJJ_RS04265 at 795.057 kb on + strand, within MMJJ_RS04265 at 795.057 kb on + strand, within MMJJ_RS04265 at 795.057 kb on + strand, within MMJJ_RS04265 at 795.057 kb on + strand, within MMJJ_RS04265 at 795.058 kb on - strand, within MMJJ_RS04265 at 795.058 kb on - strand, within MMJJ_RS04265 at 795.085 kb on + strand, within MMJJ_RS04265 at 795.085 kb on + strand, within MMJJ_RS04265 at 795.147 kb on + strand at 795.185 kb on - strand at 795.185 kb on - strand at 795.185 kb on - strand at 795.185 kb on - strand at 795.185 kb on - strand at 795.185 kb on - strand at 795.186 kb on + strand at 795.186 kb on + strand at 795.186 kb on + strand at 795.211 kb on + strand at 795.216 kb on + strand at 795.225 kb on - strand at 795.225 kb on - strand at 795.226 kb on + strand at 795.226 kb on + strand at 795.231 kb on - strand at 795.232 kb on + strand at 795.316 kb on + strand, within MMJJ_RS04270 at 795.316 kb on + strand, within MMJJ_RS04270 at 795.320 kb on + strand, within MMJJ_RS04270 at 795.323 kb on + strand, within MMJJ_RS04270
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM remove 792,473 + MMJJ_RS04255 0.83 -0.9 792,479 - MMJJ_RS04255 0.83 +2.8 792,480 + MMJJ_RS04255 0.83 +0.2 792,484 - MMJJ_RS04255 0.84 +1.2 792,485 + MMJJ_RS04255 0.84 +2.2 792,485 + MMJJ_RS04255 0.84 -1.9 792,504 + MMJJ_RS04255 0.86 -1.7 792,507 + MMJJ_RS04255 0.86 -0.9 792,516 - MMJJ_RS04255 0.87 +1.8 792,517 + MMJJ_RS04255 0.87 +0.1 792,517 + MMJJ_RS04255 0.87 +1.1 792,538 - MMJJ_RS04255 0.89 -3.4 792,538 - MMJJ_RS04255 0.89 -0.9 792,539 + MMJJ_RS04255 0.90 -4.0 792,539 + MMJJ_RS04255 0.90 -4.1 792,578 - -2.1 792,578 - +0.7 792,601 + -2.0 792,605 - +0.3 792,605 - +0.2 792,605 - +0.3 792,605 - +0.8 792,606 + -0.5 792,607 - +1.2 792,607 - -0.6 792,608 + +1.0 792,608 + -1.1 792,608 + +1.8 792,624 - +2.0 792,625 + +1.1 792,659 - +0.6 792,659 - -0.8 792,660 + +1.2 792,660 + -1.1 792,680 - +0.5 792,681 + -0.2 792,681 + +1.2 792,689 - -0.8 792,723 - -1.2 792,740 - -1.2 792,744 - -1.9 792,744 - -3.2 792,744 - -0.1 792,745 + -2.4 792,745 + -2.6 792,746 - +0.9 792,746 - -0.1 792,746 - +2.2 792,747 + -0.5 792,747 + +1.5 792,747 + +0.2 792,749 - +0.3 792,750 + +1.1 792,751 - +1.4 792,752 + +0.6 792,752 + +0.4 792,792 - +0.3 792,792 - +1.0 792,793 + -0.1 792,793 + +1.0 792,794 - +1.5 792,794 - +0.7 792,794 - -1.2 792,794 - -2.3 792,794 - +2.2 792,794 - -1.6 792,794 - +0.6 792,794 - -2.3 792,794 - +0.1 792,795 + -2.0 792,795 + -0.8 792,795 + -1.7 792,795 + +1.5 792,795 + +1.0 792,795 + +0.8 792,795 + +1.0 792,795 + +1.0 792,795 + +3.4 792,795 + +2.7 792,795 + -0.8 792,795 + -0.5 792,796 - +0.6 792,796 - -1.5 792,797 + -0.3 792,797 + -1.5 792,797 + -1.4 792,797 + +0.2 792,797 + +0.6 792,797 + -0.2 792,847 - +1.0 792,848 + +1.0 792,851 - -1.0 792,852 + -0.3 792,878 - +1.7 792,904 + +2.2 792,954 + +0.3 792,969 - +0.9 792,969 - -2.8 792,975 - -1.5 792,976 + +1.0 792,978 - -0.5 792,979 + +0.6 792,979 + +2.2 792,979 + -0.7 793,002 - -1.3 793,003 + -1.6 793,003 + -1.8 793,007 - -0.8 793,008 + +0.8 793,009 - +1.2 793,009 - -0.2 793,010 + +1.8 793,016 - +1.2 793,017 + +0.7 793,035 - +0.6 793,036 + +0.2 793,064 - +0.5 793,064 - -0.5 793,065 + +1.3 793,101 - +0.2 793,101 - +1.6 793,102 + +2.2 793,118 - +0.6 793,118 - -2.7 793,119 + -0.2 793,119 + +1.1 793,120 - -2.1 793,120 - +1.1 793,120 - +0.9 793,121 + -0.9 793,121 + +2.7 793,121 + +0.2 793,121 + +0.2 793,135 + -2.0 793,140 + +0.9 793,143 - +0.1 793,151 - -3.9 793,151 - -0.4 793,152 + -1.1 793,152 + -0.8 793,152 + -1.8 793,153 - +0.3 793,154 + +1.4 793,154 + +0.9 793,154 + +1.0 793,164 - +2.2 793,164 - +0.4 793,164 - -2.0 793,165 + -0.3 793,165 + -1.2 793,165 + +1.0 793,165 + +1.4 793,165 + +2.8 793,166 - +2.0 793,167 + +0.8 793,167 + +1.1 793,250 - +0.8 793,251 + +1.2 793,254 - +0.5 793,254 - -0.4 793,260 - +1.1 793,261 + -1.6 793,261 + -3.0 793,289 - +0.8 793,394 - +2.4 793,394 - -1.8 793,403 - +1.5 793,430 - +1.5 793,437 + -1.7 793,454 + +0.7 793,456 - -1.2 793,494 - +0.5 793,544 - +0.2 793,544 - -1.2 793,545 + -0.4 793,545 + -0.5 793,725 - MMJJ_RS04260 0.24 +1.0 793,725 - MMJJ_RS04260 0.24 +0.3 793,758 - MMJJ_RS04260 0.27 -0.1 793,758 - MMJJ_RS04260 0.27 -1.5 793,758 - MMJJ_RS04260 0.27 +0.3 793,759 + -0.4 793,759 + MMJJ_RS04260 0.27 -3.8 793,759 + MMJJ_RS04260 0.27 +0.0 793,759 + MMJJ_RS04260 0.27 -0.4 793,759 + MMJJ_RS04260 0.27 +1.6 793,761 - MMJJ_RS04260 0.27 +0.7 793,762 + MMJJ_RS04260 0.27 +0.0 793,762 + MMJJ_RS04260 0.27 +0.0 793,791 - MMJJ_RS04260 0.30 +0.6 793,815 - MMJJ_RS04260 0.32 +1.9 793,815 - MMJJ_RS04260 0.32 -0.9 793,849 + MMJJ_RS04260 0.35 +0.6 793,850 - MMJJ_RS04260 0.35 -1.8 793,851 + MMJJ_RS04260 0.35 +0.2 793,865 + MMJJ_RS04260 0.36 -1.3 793,875 + MMJJ_RS04260 0.37 -0.9 793,900 + MMJJ_RS04260 0.39 +0.4 793,900 + MMJJ_RS04260 0.39 -0.2 793,907 - MMJJ_RS04260 0.40 -0.6 793,907 - MMJJ_RS04260 0.40 -0.7 793,908 + MMJJ_RS04260 0.40 -0.4 793,912 - MMJJ_RS04260 0.40 +0.5 793,912 - MMJJ_RS04260 0.40 -0.8 793,913 + MMJJ_RS04260 0.40 -1.4 793,917 - MMJJ_RS04260 0.41 -0.6 793,917 - MMJJ_RS04260 0.41 +0.7 793,918 + MMJJ_RS04260 0.41 +1.7 793,939 - MMJJ_RS04260 0.43 -1.2 793,939 - MMJJ_RS04260 0.43 -0.0 793,939 - MMJJ_RS04260 0.43 -2.0 793,939 - MMJJ_RS04260 0.43 -0.3 793,940 + MMJJ_RS04260 0.43 +0.2 793,940 + MMJJ_RS04260 0.43 -0.5 793,940 + MMJJ_RS04260 0.43 +1.3 794,032 + MMJJ_RS04260 0.51 +0.2 794,101 + MMJJ_RS04260 0.57 -2.3 794,190 + MMJJ_RS04260 0.65 +3.2 794,259 - MMJJ_RS04260 0.71 -0.3 794,417 - MMJJ_RS04260 0.85 -1.1 794,418 + MMJJ_RS04260 0.85 -1.0 794,429 + MMJJ_RS04260 0.86 +2.7 794,476 - +0.6 794,537 - +0.6 794,538 + -1.1 794,553 - -1.8 794,591 - -1.5 794,591 - -2.2 794,591 - +1.6 794,591 - +0.8 794,592 + +1.5 794,592 + +1.2 794,647 - -2.0 794,648 + +0.2 794,700 + MMJJ_RS04265 0.15 -0.6 794,757 - MMJJ_RS04265 0.25 +0.6 794,761 - MMJJ_RS04265 0.25 +1.1 794,762 + MMJJ_RS04265 0.26 +1.9 794,762 + MMJJ_RS04265 0.26 -1.3 794,819 + MMJJ_RS04265 0.35 +0.4 794,835 - MMJJ_RS04265 0.38 -2.2 794,863 - MMJJ_RS04265 0.43 +0.7 794,890 - MMJJ_RS04265 0.48 +1.8 794,978 + MMJJ_RS04265 0.63 +0.1 795,019 - MMJJ_RS04265 0.70 +1.0 795,020 + MMJJ_RS04265 0.70 +0.5 795,056 - MMJJ_RS04265 0.76 +2.2 795,056 - MMJJ_RS04265 0.76 +1.8 795,057 + MMJJ_RS04265 0.76 +0.6 795,057 + MMJJ_RS04265 0.76 +1.9 795,057 + MMJJ_RS04265 0.76 +0.7 795,057 + MMJJ_RS04265 0.76 -3.7 795,057 + MMJJ_RS04265 0.76 -2.9 795,057 + MMJJ_RS04265 0.76 +0.5 795,057 + MMJJ_RS04265 0.76 -1.1 795,058 - MMJJ_RS04265 0.76 +1.2 795,058 - MMJJ_RS04265 0.76 +2.3 795,085 + MMJJ_RS04265 0.81 +1.0 795,085 + MMJJ_RS04265 0.81 -1.3 795,147 + +0.6 795,185 - -0.9 795,185 - -2.3 795,185 - -0.1 795,185 - +1.6 795,185 - +0.7 795,185 - +1.1 795,186 + -0.6 795,186 + -0.7 795,186 + +0.4 795,211 + -2.1 795,216 + -0.2 795,225 - -1.7 795,225 - -2.4 795,226 + +1.1 795,226 + +0.5 795,231 - -0.4 795,232 + -0.4 795,316 + MMJJ_RS04270 0.13 -3.5 795,316 + MMJJ_RS04270 0.13 +0.5 795,320 + MMJJ_RS04270 0.14 +0.2 795,323 + MMJJ_RS04270 0.14 +0.7
Or see this region's nucleotide sequence