Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03945

Experiment: McCas_formate_complete hypophosphite 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03935 and MMJJ_RS03940 are separated by 39 nucleotidesMMJJ_RS03940 and MMJJ_RS03945 are separated by 34 nucleotidesMMJJ_RS03945 and MMJJ_RS03950 are separated by 17 nucleotides MMJJ_RS03935: MMJJ_RS03935 - NAAT family transporter, at 734,792 to 735,433 _RS03935 MMJJ_RS03940: MMJJ_RS03940 - DMT family transporter, at 735,473 to 735,916 _RS03940 MMJJ_RS03945: MMJJ_RS03945 - mechanosensitive ion channel family protein, at 735,951 to 737,006 _RS03945 MMJJ_RS03950: MMJJ_RS03950 - tyrosine--tRNA ligase, at 737,024 to 737,953 _RS03950 Position (kb) 735 736 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 735.037 kb on + strand, within MMJJ_RS03935at 735.037 kb on + strand, within MMJJ_RS03935at 735.043 kb on + strand, within MMJJ_RS03935at 735.043 kb on + strand, within MMJJ_RS03935at 735.055 kb on - strand, within MMJJ_RS03935at 735.055 kb on - strand, within MMJJ_RS03935at 735.056 kb on + strand, within MMJJ_RS03935at 735.157 kb on + strand, within MMJJ_RS03935at 735.157 kb on + strand, within MMJJ_RS03935at 735.157 kb on + strand, within MMJJ_RS03935at 735.159 kb on - strand, within MMJJ_RS03935at 735.177 kb on - strand, within MMJJ_RS03935at 735.181 kb on + strand, within MMJJ_RS03935at 735.229 kb on - strand, within MMJJ_RS03935at 735.259 kb on + strand, within MMJJ_RS03935at 735.279 kb on - strand, within MMJJ_RS03935at 735.280 kb on + strand, within MMJJ_RS03935at 735.280 kb on + strand, within MMJJ_RS03935at 735.283 kb on - strand, within MMJJ_RS03935at 735.283 kb on - strand, within MMJJ_RS03935at 735.285 kb on - strand, within MMJJ_RS03935at 735.290 kb on - strand, within MMJJ_RS03935at 735.291 kb on + strand, within MMJJ_RS03935at 735.375 kb on - strandat 735.388 kb on + strandat 735.522 kb on + strand, within MMJJ_RS03940at 735.644 kb on - strand, within MMJJ_RS03940at 735.647 kb on - strand, within MMJJ_RS03940at 735.648 kb on + strand, within MMJJ_RS03940at 735.654 kb on + strand, within MMJJ_RS03940at 735.671 kb on + strand, within MMJJ_RS03940at 735.671 kb on + strand, within MMJJ_RS03940at 735.675 kb on + strand, within MMJJ_RS03940at 735.675 kb on + strand, within MMJJ_RS03940at 735.692 kb on - strand, within MMJJ_RS03940at 735.699 kb on - strand, within MMJJ_RS03940at 735.700 kb on + strand, within MMJJ_RS03940at 735.711 kb on + strand, within MMJJ_RS03940at 735.720 kb on + strand, within MMJJ_RS03940at 735.736 kb on - strand, within MMJJ_RS03940at 735.759 kb on + strand, within MMJJ_RS03940at 735.764 kb on - strand, within MMJJ_RS03940at 735.807 kb on + strand, within MMJJ_RS03940at 735.836 kb on - strand, within MMJJ_RS03940at 735.837 kb on + strand, within MMJJ_RS03940at 735.848 kb on - strand, within MMJJ_RS03940at 735.869 kb on - strand, within MMJJ_RS03940at 735.870 kb on + strand, within MMJJ_RS03940at 735.897 kb on + strandat 735.916 kb on - strandat 735.948 kb on - strandat 735.948 kb on - strandat 735.948 kb on - strandat 735.949 kb on + strandat 735.952 kb on - strandat 735.953 kb on + strandat 735.953 kb on + strandat 735.964 kb on - strandat 735.964 kb on - strandat 735.965 kb on + strandat 735.967 kb on - strandat 735.967 kb on - strandat 735.967 kb on - strandat 735.967 kb on - strandat 735.968 kb on + strandat 735.968 kb on + strandat 735.969 kb on - strandat 735.970 kb on + strandat 736.024 kb on + strandat 736.035 kb on - strandat 736.035 kb on - strandat 736.035 kb on - strandat 736.036 kb on + strandat 736.047 kb on + strandat 736.049 kb on - strandat 736.049 kb on - strandat 736.050 kb on + strandat 736.054 kb on + strandat 736.054 kb on + strandat 736.054 kb on + strandat 736.054 kb on + strandat 736.098 kb on - strand, within MMJJ_RS03945at 736.141 kb on + strand, within MMJJ_RS03945at 736.182 kb on - strand, within MMJJ_RS03945at 736.182 kb on - strand, within MMJJ_RS03945at 736.183 kb on + strand, within MMJJ_RS03945at 736.185 kb on - strand, within MMJJ_RS03945at 736.226 kb on + strand, within MMJJ_RS03945at 736.355 kb on - strand, within MMJJ_RS03945at 736.356 kb on + strand, within MMJJ_RS03945at 736.356 kb on + strand, within MMJJ_RS03945at 736.416 kb on + strand, within MMJJ_RS03945at 736.553 kb on - strand, within MMJJ_RS03945at 736.554 kb on + strand, within MMJJ_RS03945at 736.628 kb on - strand, within MMJJ_RS03945at 736.629 kb on + strand, within MMJJ_RS03945at 736.660 kb on - strand, within MMJJ_RS03945at 736.661 kb on + strand, within MMJJ_RS03945at 736.661 kb on + strand, within MMJJ_RS03945at 736.665 kb on - strand, within MMJJ_RS03945at 736.666 kb on + strand, within MMJJ_RS03945at 736.666 kb on + strand, within MMJJ_RS03945at 736.671 kb on - strand, within MMJJ_RS03945at 736.671 kb on - strand, within MMJJ_RS03945at 736.671 kb on - strand, within MMJJ_RS03945at 736.671 kb on - strand, within MMJJ_RS03945at 736.672 kb on + strand, within MMJJ_RS03945at 736.672 kb on + strand, within MMJJ_RS03945at 736.673 kb on - strand, within MMJJ_RS03945at 736.764 kb on - strand, within MMJJ_RS03945at 736.843 kb on + strand, within MMJJ_RS03945at 736.845 kb on - strand, within MMJJ_RS03945at 736.854 kb on - strand, within MMJJ_RS03945at 736.891 kb on - strand, within MMJJ_RS03945at 736.892 kb on + strand, within MMJJ_RS03945at 736.892 kb on + strand, within MMJJ_RS03945at 736.892 kb on + strand, within MMJJ_RS03945at 736.895 kb on - strand, within MMJJ_RS03945at 736.905 kb on - strandat 736.906 kb on + strandat 736.909 kb on - strandat 736.909 kb on - strandat 736.909 kb on - strandat 736.910 kb on + strandat 736.948 kb on + strandat 737.901 kb on + strandat 737.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM
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735,037 + MMJJ_RS03935 0.38 -1.1
735,037 + MMJJ_RS03935 0.38 -2.1
735,043 + MMJJ_RS03935 0.39 -1.9
735,043 + MMJJ_RS03935 0.39 +2.7
735,055 - MMJJ_RS03935 0.41 -0.0
735,055 - MMJJ_RS03935 0.41 +1.8
735,056 + MMJJ_RS03935 0.41 -0.1
735,157 + MMJJ_RS03935 0.57 -0.4
735,157 + MMJJ_RS03935 0.57 -2.2
735,157 + MMJJ_RS03935 0.57 -0.9
735,159 - MMJJ_RS03935 0.57 -0.8
735,177 - MMJJ_RS03935 0.60 +0.5
735,181 + MMJJ_RS03935 0.61 -0.8
735,229 - MMJJ_RS03935 0.68 -1.0
735,259 + MMJJ_RS03935 0.73 -1.6
735,279 - MMJJ_RS03935 0.76 -2.2
735,280 + MMJJ_RS03935 0.76 -0.2
735,280 + MMJJ_RS03935 0.76 +0.8
735,283 - MMJJ_RS03935 0.76 +0.5
735,283 - MMJJ_RS03935 0.76 -0.9
735,285 - MMJJ_RS03935 0.77 +0.6
735,290 - MMJJ_RS03935 0.78 -0.7
735,291 + MMJJ_RS03935 0.78 +1.4
735,375 - -2.2
735,388 + -3.0
735,522 + MMJJ_RS03940 0.11 +0.9
735,644 - MMJJ_RS03940 0.39 +0.5
735,647 - MMJJ_RS03940 0.39 +0.9
735,648 + MMJJ_RS03940 0.39 +1.5
735,654 + MMJJ_RS03940 0.41 +0.2
735,671 + MMJJ_RS03940 0.45 +2.4
735,671 + MMJJ_RS03940 0.45 -0.9
735,675 + MMJJ_RS03940 0.45 -0.0
735,675 + MMJJ_RS03940 0.45 -0.0
735,692 - MMJJ_RS03940 0.49 +2.1
735,699 - MMJJ_RS03940 0.51 -0.9
735,700 + MMJJ_RS03940 0.51 +1.7
735,711 + MMJJ_RS03940 0.54 -2.4
735,720 + MMJJ_RS03940 0.56 +0.0
735,736 - MMJJ_RS03940 0.59 +1.0
735,759 + MMJJ_RS03940 0.64 +0.5
735,764 - MMJJ_RS03940 0.66 -3.2
735,807 + MMJJ_RS03940 0.75 -0.2
735,836 - MMJJ_RS03940 0.82 -0.2
735,837 + MMJJ_RS03940 0.82 +1.8
735,848 - MMJJ_RS03940 0.84 +0.3
735,869 - MMJJ_RS03940 0.89 +0.9
735,870 + MMJJ_RS03940 0.89 +0.8
735,897 + +1.3
735,916 - -1.8
735,948 - -0.5
735,948 - +2.0
735,948 - -0.4
735,949 + +0.5
735,952 - +2.1
735,953 + +3.5
735,953 + +1.8
735,964 - -3.0
735,964 - -3.2
735,965 + -3.1
735,967 - -3.3
735,967 - -1.2
735,967 - -1.8
735,967 - -0.9
735,968 + -2.7
735,968 + -3.4
735,969 - -2.4
735,970 + +1.9
736,024 + +0.4
736,035 - +2.2
736,035 - +1.8
736,035 - +2.0
736,036 + +0.3
736,047 + +0.7
736,049 - +1.8
736,049 - -1.8
736,050 + +0.5
736,054 + -0.6
736,054 + -0.4
736,054 + -0.9
736,054 + +0.1
736,098 - MMJJ_RS03945 0.14 -2.0
736,141 + MMJJ_RS03945 0.18 +0.9
736,182 - MMJJ_RS03945 0.22 +2.2
736,182 - MMJJ_RS03945 0.22 -1.8
736,183 + MMJJ_RS03945 0.22 +1.6
736,185 - MMJJ_RS03945 0.22 +0.5
736,226 + MMJJ_RS03945 0.26 +2.4
736,355 - MMJJ_RS03945 0.38 +2.3
736,356 + MMJJ_RS03945 0.38 +1.7
736,356 + MMJJ_RS03945 0.38 +1.7
736,416 + MMJJ_RS03945 0.44 -2.1
736,553 - MMJJ_RS03945 0.57 -2.0
736,554 + MMJJ_RS03945 0.57 -3.4
736,628 - MMJJ_RS03945 0.64 +0.7
736,629 + MMJJ_RS03945 0.64 +1.5
736,660 - MMJJ_RS03945 0.67 +1.4
736,661 + MMJJ_RS03945 0.67 +0.5
736,661 + MMJJ_RS03945 0.67 +0.5
736,665 - MMJJ_RS03945 0.68 -0.7
736,666 + MMJJ_RS03945 0.68 +0.5
736,666 + MMJJ_RS03945 0.68 +2.6
736,671 - MMJJ_RS03945 0.68 -1.3
736,671 - MMJJ_RS03945 0.68 +0.8
736,671 - MMJJ_RS03945 0.68 +1.7
736,671 - MMJJ_RS03945 0.68 -3.6
736,672 + MMJJ_RS03945 0.68 +1.6
736,672 + MMJJ_RS03945 0.68 -0.2
736,673 - MMJJ_RS03945 0.68 +1.6
736,764 - MMJJ_RS03945 0.77 -1.4
736,843 + MMJJ_RS03945 0.84 +1.5
736,845 - MMJJ_RS03945 0.85 +1.2
736,854 - MMJJ_RS03945 0.86 +1.9
736,891 - MMJJ_RS03945 0.89 +1.9
736,892 + MMJJ_RS03945 0.89 +1.0
736,892 + MMJJ_RS03945 0.89 +3.9
736,892 + MMJJ_RS03945 0.89 +0.1
736,895 - MMJJ_RS03945 0.89 +1.3
736,905 - -1.6
736,906 + +0.1
736,909 - +0.9
736,909 - +0.8
736,909 - -1.0
736,910 + +0.8
736,948 + -0.2
737,901 + -3.3
737,941 - +1.1

Or see this region's nucleotide sequence