Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03390

Experiment: McCas_formate_complete hypophosphite 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03370 and MMJJ_RS03375 are separated by 18 nucleotidesMMJJ_RS03375 and MMJJ_RS03380 are separated by 65 nucleotidesMMJJ_RS03380 and MMJJ_RS03385 are separated by 5 nucleotidesMMJJ_RS03385 and MMJJ_RS03390 are separated by 0 nucleotidesMMJJ_RS03390 and MMJJ_RS09295 are separated by 7 nucleotidesMMJJ_RS09295 and MMJJ_RS03395 are separated by 24 nucleotidesMMJJ_RS03395 and MMJJ_RS09300 are separated by 12 nucleotidesMMJJ_RS09300 and MMJJ_RS03400 are separated by 11 nucleotidesMMJJ_RS03400 and MMJJ_RS03405 overlap by 8 nucleotides MMJJ_RS03370: MMJJ_RS03370 - hypothetical protein, at 638,604 to 638,948 _RS03370 MMJJ_RS03375: MMJJ_RS03375 - hypothetical protein, at 638,967 to 639,152 _RS03375 MMJJ_RS03380: MMJJ_RS03380 - hypothetical protein, at 639,218 to 639,454 _RS03380 MMJJ_RS03385: MMJJ_RS03385 - hypothetical protein, at 639,460 to 639,825 _RS03385 MMJJ_RS03390: MMJJ_RS03390 - hypothetical protein, at 639,826 to 640,062 _RS03390 MMJJ_RS09295: MMJJ_RS09295 - hypothetical protein, at 640,070 to 640,225 _RS09295 MMJJ_RS03395: MMJJ_RS03395 - hypothetical protein, at 640,250 to 640,474 _RS03395 MMJJ_RS09300: MMJJ_RS09300 - hypothetical protein, at 640,487 to 640,660 _RS09300 MMJJ_RS03400: MMJJ_RS03400 - hypothetical protein, at 640,672 to 640,908 _RS03400 MMJJ_RS03405: MMJJ_RS03405 - hypothetical protein, at 640,901 to 642,241 _RS03405 Position (kb) 639 640 641Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 638.887 kb on - strand, within MMJJ_RS03370at 638.888 kb on + strand, within MMJJ_RS03370at 638.891 kb on - strand, within MMJJ_RS03370at 638.892 kb on + strand, within MMJJ_RS03370at 638.922 kb on - strandat 638.923 kb on + strandat 638.943 kb on - strandat 638.943 kb on - strandat 638.951 kb on + strandat 638.988 kb on - strand, within MMJJ_RS03375at 639.039 kb on + strand, within MMJJ_RS03375at 639.078 kb on - strand, within MMJJ_RS03375at 639.078 kb on - strand, within MMJJ_RS03375at 639.080 kb on - strand, within MMJJ_RS03375at 639.080 kb on - strand, within MMJJ_RS03375at 639.121 kb on - strand, within MMJJ_RS03375at 639.121 kb on - strand, within MMJJ_RS03375at 639.129 kb on - strand, within MMJJ_RS03375at 639.169 kb on + strandat 639.169 kb on + strandat 639.190 kb on - strandat 639.206 kb on - strandat 639.206 kb on - strandat 639.209 kb on - strandat 639.210 kb on + strandat 639.213 kb on + strandat 639.308 kb on - strand, within MMJJ_RS03380at 639.308 kb on - strand, within MMJJ_RS03380at 639.308 kb on - strand, within MMJJ_RS03380at 639.309 kb on + strand, within MMJJ_RS03380at 639.312 kb on - strand, within MMJJ_RS03380at 639.313 kb on + strand, within MMJJ_RS03380at 639.313 kb on + strand, within MMJJ_RS03380at 639.320 kb on - strand, within MMJJ_RS03380at 639.505 kb on + strand, within MMJJ_RS03385at 639.523 kb on + strandat 639.563 kb on - strand, within MMJJ_RS03385at 639.575 kb on + strand, within MMJJ_RS03385at 639.591 kb on - strand, within MMJJ_RS03385at 639.592 kb on + strand, within MMJJ_RS03385at 639.623 kb on + strand, within MMJJ_RS03385at 639.652 kb on + strand, within MMJJ_RS03385at 639.690 kb on + strand, within MMJJ_RS03385at 639.694 kb on - strand, within MMJJ_RS03385at 639.715 kb on - strand, within MMJJ_RS03385at 639.715 kb on - strand, within MMJJ_RS03385at 639.743 kb on - strand, within MMJJ_RS03385at 639.743 kb on - strand, within MMJJ_RS03385at 639.744 kb on + strand, within MMJJ_RS03385at 639.747 kb on - strand, within MMJJ_RS03385at 639.748 kb on + strand, within MMJJ_RS03385at 639.862 kb on + strand, within MMJJ_RS03390at 640.071 kb on - strandat 640.072 kb on + strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.075 kb on - strandat 640.077 kb on - strandat 640.111 kb on - strand, within MMJJ_RS09295at 640.330 kb on - strand, within MMJJ_RS03395at 640.330 kb on - strand, within MMJJ_RS03395at 640.332 kb on - strand, within MMJJ_RS03395at 640.332 kb on - strand, within MMJJ_RS03395at 640.333 kb on + strand, within MMJJ_RS03395at 640.456 kb on - strandat 640.457 kb on + strandat 640.462 kb on - strandat 640.488 kb on - strandat 640.488 kb on - strandat 640.489 kb on + strandat 640.500 kb on + strandat 640.577 kb on - strand, within MMJJ_RS09300at 640.640 kb on - strand, within MMJJ_RS09300

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM
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638,887 - MMJJ_RS03370 0.82 -1.0
638,888 + MMJJ_RS03370 0.82 +2.2
638,891 - MMJJ_RS03370 0.83 +1.2
638,892 + MMJJ_RS03370 0.83 -1.9
638,922 - -0.3
638,923 + -0.5
638,943 - +0.5
638,943 - +2.0
638,951 + +0.8
638,988 - MMJJ_RS03375 0.11 -0.2
639,039 + MMJJ_RS03375 0.39 -0.2
639,078 - MMJJ_RS03375 0.60 -1.6
639,078 - MMJJ_RS03375 0.60 -3.8
639,080 - MMJJ_RS03375 0.61 -1.5
639,080 - MMJJ_RS03375 0.61 -1.6
639,121 - MMJJ_RS03375 0.83 +0.3
639,121 - MMJJ_RS03375 0.83 -1.6
639,129 - MMJJ_RS03375 0.87 +0.5
639,169 + -1.6
639,169 + +0.2
639,190 - +0.0
639,206 - -0.2
639,206 - +1.5
639,209 - +0.6
639,210 + -1.6
639,213 + +1.2
639,308 - MMJJ_RS03380 0.38 -2.6
639,308 - MMJJ_RS03380 0.38 -4.3
639,308 - MMJJ_RS03380 0.38 +0.8
639,309 + MMJJ_RS03380 0.38 -3.3
639,312 - MMJJ_RS03380 0.40 +1.0
639,313 + MMJJ_RS03380 0.40 -0.5
639,313 + MMJJ_RS03380 0.40 -1.2
639,320 - MMJJ_RS03380 0.43 -1.3
639,505 + MMJJ_RS03385 0.12 +0.7
639,523 + -0.2
639,563 - MMJJ_RS03385 0.28 +1.1
639,575 + MMJJ_RS03385 0.31 -1.7
639,591 - MMJJ_RS03385 0.36 +1.8
639,592 + MMJJ_RS03385 0.36 +0.4
639,623 + MMJJ_RS03385 0.45 -2.2
639,652 + MMJJ_RS03385 0.52 -3.6
639,690 + MMJJ_RS03385 0.63 +0.3
639,694 - MMJJ_RS03385 0.64 -0.4
639,715 - MMJJ_RS03385 0.70 -1.8
639,715 - MMJJ_RS03385 0.70 +0.4
639,743 - MMJJ_RS03385 0.77 -1.6
639,743 - MMJJ_RS03385 0.77 -0.9
639,744 + MMJJ_RS03385 0.78 +0.7
639,747 - MMJJ_RS03385 0.78 +2.0
639,748 + MMJJ_RS03385 0.79 -1.2
639,862 + MMJJ_RS03390 0.15 -2.4
640,071 - -0.8
640,072 + -1.1
640,075 - -3.2
640,075 - -2.0
640,075 - +2.0
640,075 - -2.1
640,075 - -1.1
640,075 - +0.5
640,077 - +0.5
640,111 - MMJJ_RS09295 0.26 +0.2
640,330 - MMJJ_RS03395 0.36 -2.4
640,330 - MMJJ_RS03395 0.36 -2.3
640,332 - MMJJ_RS03395 0.36 -1.7
640,332 - MMJJ_RS03395 0.36 +0.5
640,333 + MMJJ_RS03395 0.37 -0.4
640,456 - -2.2
640,457 + +1.0
640,462 - +0.7
640,488 - -2.8
640,488 - -3.1
640,489 + +0.1
640,500 + -0.4
640,577 - MMJJ_RS09300 0.52 +1.2
640,640 - MMJJ_RS09300 0.88 -0.1

Or see this region's nucleotide sequence