Experiment: McCas_formate_complete hypophosphite 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02895 and MMJJ_RS02900 are separated by 156 nucleotides MMJJ_RS02900 and MMJJ_RS02905 are separated by 33 nucleotides MMJJ_RS02905 and MMJJ_RS02910 are separated by 132 nucleotides MMJJ_RS02910 and MMJJ_RS02915 are separated by 206 nucleotides
MMJJ_RS02895: MMJJ_RS02895 - ATP-binding protein, at 544,725 to 545,570
_RS02895
MMJJ_RS02900: MMJJ_RS02900 - hypothetical protein, at 545,727 to 546,011
_RS02900
MMJJ_RS02905: MMJJ_RS02905 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,045 to 546,404
_RS02905
MMJJ_RS02910: MMJJ_RS02910 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,537 to 546,938
_RS02910
MMJJ_RS02915: MMJJ_RS02915 - hypothetical protein, at 547,145 to 547,381
_RS02915
Position (kb) 546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 545.107 kb on - strand, within MMJJ_RS02895 at 545.156 kb on + strand, within MMJJ_RS02895 at 545.207 kb on + strand, within MMJJ_RS02895 at 545.227 kb on - strand, within MMJJ_RS02895 at 545.227 kb on - strand, within MMJJ_RS02895 at 545.239 kb on - strand, within MMJJ_RS02895 at 545.240 kb on + strand, within MMJJ_RS02895 at 545.252 kb on - strand, within MMJJ_RS02895 at 545.273 kb on + strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.292 kb on + strand, within MMJJ_RS02895 at 545.356 kb on + strand, within MMJJ_RS02895 at 545.357 kb on - strand, within MMJJ_RS02895 at 545.358 kb on + strand, within MMJJ_RS02895 at 545.358 kb on + strand, within MMJJ_RS02895 at 545.359 kb on - strand at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.360 kb on + strand, within MMJJ_RS02895 at 545.363 kb on + strand, within MMJJ_RS02895 at 545.370 kb on + strand, within MMJJ_RS02895 at 545.381 kb on - strand, within MMJJ_RS02895 at 545.438 kb on + strand, within MMJJ_RS02895 at 545.460 kb on + strand, within MMJJ_RS02895 at 545.462 kb on - strand, within MMJJ_RS02895 at 545.468 kb on + strand, within MMJJ_RS02895 at 545.471 kb on - strand, within MMJJ_RS02895 at 545.472 kb on + strand, within MMJJ_RS02895 at 545.472 kb on + strand, within MMJJ_RS02895 at 545.501 kb on + strand at 545.531 kb on - strand at 545.568 kb on - strand at 545.588 kb on - strand at 545.640 kb on + strand at 545.641 kb on - strand at 545.644 kb on + strand at 545.691 kb on - strand at 545.697 kb on + strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.703 kb on + strand at 545.703 kb on + strand at 545.703 kb on + strand at 545.735 kb on - strand at 545.735 kb on - strand at 545.735 kb on - strand at 545.735 kb on - strand at 545.736 kb on + strand at 545.775 kb on + strand, within MMJJ_RS02900 at 545.785 kb on + strand, within MMJJ_RS02900 at 545.801 kb on - strand, within MMJJ_RS02900 at 545.801 kb on - strand, within MMJJ_RS02900 at 545.802 kb on + strand, within MMJJ_RS02900 at 545.813 kb on - strand, within MMJJ_RS02900 at 545.824 kb on - strand, within MMJJ_RS02900 at 545.825 kb on + strand, within MMJJ_RS02900 at 545.846 kb on - strand, within MMJJ_RS02900 at 545.853 kb on + strand, within MMJJ_RS02900 at 545.867 kb on - strand, within MMJJ_RS02900 at 545.874 kb on + strand, within MMJJ_RS02900 at 545.874 kb on + strand, within MMJJ_RS02900 at 545.875 kb on - strand, within MMJJ_RS02900 at 545.875 kb on - strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 546.023 kb on + strand at 546.064 kb on - strand at 546.233 kb on - strand, within MMJJ_RS02905 at 546.328 kb on - strand, within MMJJ_RS02905 at 546.328 kb on - strand, within MMJJ_RS02905 at 546.329 kb on + strand, within MMJJ_RS02905 at 546.329 kb on + strand, within MMJJ_RS02905 at 546.344 kb on + strand, within MMJJ_RS02905 at 546.352 kb on - strand, within MMJJ_RS02905 at 546.439 kb on + strand at 546.443 kb on + strand at 546.447 kb on - strand at 546.449 kb on - strand at 546.450 kb on + strand at 546.450 kb on + strand at 546.451 kb on - strand at 546.451 kb on - strand at 546.478 kb on - strand at 546.513 kb on - strand at 546.552 kb on - strand at 546.552 kb on - strand at 546.552 kb on - strand at 546.553 kb on + strand at 546.553 kb on + strand at 546.553 kb on + strand at 546.596 kb on - strand, within MMJJ_RS02910 at 546.612 kb on + strand, within MMJJ_RS02910 at 546.676 kb on - strand, within MMJJ_RS02910 at 546.712 kb on - strand, within MMJJ_RS02910 at 546.715 kb on - strand, within MMJJ_RS02910 at 546.716 kb on + strand, within MMJJ_RS02910 at 546.770 kb on - strand, within MMJJ_RS02910 at 546.781 kb on - strand, within MMJJ_RS02910 at 546.800 kb on - strand, within MMJJ_RS02910 at 546.801 kb on + strand, within MMJJ_RS02910 at 546.802 kb on - strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.805 kb on - strand, within MMJJ_RS02910 at 546.808 kb on - strand, within MMJJ_RS02910 at 546.809 kb on + strand, within MMJJ_RS02910 at 546.809 kb on + strand, within MMJJ_RS02910 at 546.810 kb on - strand, within MMJJ_RS02910 at 546.810 kb on - strand, within MMJJ_RS02910 at 546.810 kb on - strand, within MMJJ_RS02910 at 546.811 kb on + strand, within MMJJ_RS02910 at 546.811 kb on + strand, within MMJJ_RS02910 at 546.844 kb on - strand, within MMJJ_RS02910 at 546.862 kb on - strand, within MMJJ_RS02910 at 546.864 kb on - strand, within MMJJ_RS02910 at 546.888 kb on + strand, within MMJJ_RS02910 at 546.910 kb on - strand at 546.911 kb on + strand at 546.928 kb on - strand at 546.994 kb on + strand at 547.014 kb on + strand at 547.021 kb on + strand at 547.025 kb on + strand at 547.025 kb on + strand at 547.042 kb on + strand at 547.043 kb on - strand at 547.043 kb on - strand at 547.055 kb on - strand at 547.056 kb on + strand at 547.060 kb on - strand at 547.079 kb on - strand at 547.083 kb on + strand at 547.086 kb on - strand at 547.086 kb on - strand at 547.086 kb on - strand at 547.110 kb on - strand at 547.128 kb on - strand at 547.128 kb on - strand at 547.161 kb on - strand at 547.162 kb on + strand at 547.162 kb on + strand at 547.181 kb on - strand, within MMJJ_RS02915 at 547.181 kb on - strand, within MMJJ_RS02915 at 547.182 kb on + strand, within MMJJ_RS02915 at 547.182 kb on + strand, within MMJJ_RS02915 at 547.201 kb on - strand, within MMJJ_RS02915 at 547.229 kb on - strand, within MMJJ_RS02915 at 547.285 kb on - strand, within MMJJ_RS02915 at 547.323 kb on - strand, within MMJJ_RS02915 at 547.323 kb on - strand, within MMJJ_RS02915 at 547.323 kb on - strand, within MMJJ_RS02915 at 547.324 kb on + strand, within MMJJ_RS02915 at 547.324 kb on + strand, within MMJJ_RS02915 at 547.375 kb on + strand at 547.384 kb on + strand at 547.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM remove 545,107 - MMJJ_RS02895 0.45 +0.1 545,156 + MMJJ_RS02895 0.51 -1.0 545,207 + MMJJ_RS02895 0.57 -0.2 545,227 - MMJJ_RS02895 0.59 -2.4 545,227 - MMJJ_RS02895 0.59 -0.9 545,239 - MMJJ_RS02895 0.61 -0.2 545,240 + MMJJ_RS02895 0.61 -1.1 545,252 - MMJJ_RS02895 0.62 +2.5 545,273 + MMJJ_RS02895 0.65 +2.0 545,291 - MMJJ_RS02895 0.67 -2.5 545,291 - MMJJ_RS02895 0.67 -0.5 545,291 - MMJJ_RS02895 0.67 +1.1 545,292 + MMJJ_RS02895 0.67 +0.7 545,356 + MMJJ_RS02895 0.75 -1.1 545,357 - MMJJ_RS02895 0.75 -0.9 545,358 + MMJJ_RS02895 0.75 -2.7 545,358 + MMJJ_RS02895 0.75 +0.9 545,359 - +1.0 545,359 - MMJJ_RS02895 0.75 -0.0 545,359 - MMJJ_RS02895 0.75 +0.2 545,359 - MMJJ_RS02895 0.75 +0.6 545,359 - MMJJ_RS02895 0.75 -0.2 545,360 + MMJJ_RS02895 0.75 -3.4 545,363 + MMJJ_RS02895 0.75 -0.1 545,370 + MMJJ_RS02895 0.76 -0.8 545,381 - MMJJ_RS02895 0.78 +0.3 545,438 + MMJJ_RS02895 0.84 +1.2 545,460 + MMJJ_RS02895 0.87 +0.9 545,462 - MMJJ_RS02895 0.87 -1.2 545,468 + MMJJ_RS02895 0.88 +0.1 545,471 - MMJJ_RS02895 0.88 -1.0 545,472 + MMJJ_RS02895 0.88 -2.9 545,472 + MMJJ_RS02895 0.88 -3.3 545,501 + +1.5 545,531 - -0.7 545,568 - -0.3 545,588 - +1.4 545,640 + +3.3 545,641 - +0.2 545,644 + +2.7 545,691 - +0.1 545,697 + +1.0 545,702 - +0.2 545,702 - +0.5 545,702 - -2.5 545,702 - -0.5 545,702 - +1.1 545,702 - -0.0 545,703 + +2.0 545,703 + +1.1 545,703 + +1.0 545,735 - -0.1 545,735 - +1.5 545,735 - -1.6 545,735 - -0.7 545,736 + +1.9 545,775 + MMJJ_RS02900 0.17 +1.4 545,785 + MMJJ_RS02900 0.20 -1.9 545,801 - MMJJ_RS02900 0.26 -0.4 545,801 - MMJJ_RS02900 0.26 -2.5 545,802 + MMJJ_RS02900 0.26 +2.2 545,813 - MMJJ_RS02900 0.30 -2.5 545,824 - MMJJ_RS02900 0.34 +0.0 545,825 + MMJJ_RS02900 0.34 +0.8 545,846 - MMJJ_RS02900 0.42 -1.8 545,853 + MMJJ_RS02900 0.44 -0.9 545,867 - MMJJ_RS02900 0.49 -1.8 545,874 + MMJJ_RS02900 0.52 +0.2 545,874 + MMJJ_RS02900 0.52 -0.5 545,875 - MMJJ_RS02900 0.52 -3.4 545,875 - MMJJ_RS02900 0.52 -1.0 545,876 + MMJJ_RS02900 0.52 -1.2 545,876 + MMJJ_RS02900 0.52 +1.7 545,876 + MMJJ_RS02900 0.52 -0.5 545,876 + MMJJ_RS02900 0.52 -0.3 545,876 + MMJJ_RS02900 0.52 +1.0 546,023 + +1.5 546,064 - +0.1 546,233 - MMJJ_RS02905 0.52 +2.3 546,328 - MMJJ_RS02905 0.79 +1.0 546,328 - MMJJ_RS02905 0.79 -0.6 546,329 + MMJJ_RS02905 0.79 -0.8 546,329 + MMJJ_RS02905 0.79 +0.1 546,344 + MMJJ_RS02905 0.83 +0.2 546,352 - MMJJ_RS02905 0.85 +1.0 546,439 + +1.0 546,443 + +1.0 546,447 - -1.0 546,449 - -1.3 546,450 + -0.7 546,450 + +0.1 546,451 - -1.2 546,451 - +1.0 546,478 - -2.2 546,513 - +1.2 546,552 - -0.5 546,552 - -1.1 546,552 - -1.1 546,553 + +0.1 546,553 + +1.6 546,553 + -2.3 546,596 - MMJJ_RS02910 0.15 +0.0 546,612 + MMJJ_RS02910 0.19 -1.5 546,676 - MMJJ_RS02910 0.35 +0.5 546,712 - MMJJ_RS02910 0.44 +0.7 546,715 - MMJJ_RS02910 0.44 -0.2 546,716 + MMJJ_RS02910 0.45 -0.2 546,770 - MMJJ_RS02910 0.58 +1.7 546,781 - MMJJ_RS02910 0.61 +0.2 546,800 - MMJJ_RS02910 0.65 -2.8 546,801 + MMJJ_RS02910 0.66 -0.5 546,802 - MMJJ_RS02910 0.66 -0.1 546,803 + MMJJ_RS02910 0.66 -0.3 546,803 + MMJJ_RS02910 0.66 +0.7 546,803 + MMJJ_RS02910 0.66 -0.5 546,803 + MMJJ_RS02910 0.66 +0.2 546,803 + MMJJ_RS02910 0.66 +0.0 546,805 - MMJJ_RS02910 0.67 -1.0 546,808 - MMJJ_RS02910 0.67 -2.5 546,809 + MMJJ_RS02910 0.68 -0.3 546,809 + MMJJ_RS02910 0.68 +1.1 546,810 - MMJJ_RS02910 0.68 +0.9 546,810 - MMJJ_RS02910 0.68 +1.4 546,810 - MMJJ_RS02910 0.68 -3.4 546,811 + MMJJ_RS02910 0.68 -2.5 546,811 + MMJJ_RS02910 0.68 +0.3 546,844 - MMJJ_RS02910 0.76 +0.5 546,862 - MMJJ_RS02910 0.81 -3.4 546,864 - MMJJ_RS02910 0.81 +0.5 546,888 + MMJJ_RS02910 0.87 +1.0 546,910 - -0.2 546,911 + +0.4 546,928 - +0.5 546,994 + -0.1 547,014 + +3.6 547,021 + -2.2 547,025 + +2.1 547,025 + -0.1 547,042 + +1.5 547,043 - -2.5 547,043 - -2.9 547,055 - -0.4 547,056 + -1.2 547,060 - -0.6 547,079 - -0.0 547,083 + -1.3 547,086 - +0.2 547,086 - +0.0 547,086 - -0.3 547,110 - -0.8 547,128 - -0.2 547,128 - +0.6 547,161 - +0.5 547,162 + +0.9 547,162 + +1.3 547,181 - MMJJ_RS02915 0.15 +0.4 547,181 - MMJJ_RS02915 0.15 -0.3 547,182 + MMJJ_RS02915 0.16 -1.9 547,182 + MMJJ_RS02915 0.16 -2.7 547,201 - MMJJ_RS02915 0.24 +0.5 547,229 - MMJJ_RS02915 0.35 +2.1 547,285 - MMJJ_RS02915 0.59 -1.2 547,323 - MMJJ_RS02915 0.75 -0.9 547,323 - MMJJ_RS02915 0.75 +2.2 547,323 - MMJJ_RS02915 0.75 -0.6 547,324 + MMJJ_RS02915 0.76 +0.1 547,324 + MMJJ_RS02915 0.76 -1.5 547,375 + +0.0 547,384 + -2.9 547,384 + +1.1
Or see this region's nucleotide sequence