Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02160

Experiment: McCas_formate_complete hypophosphite 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02150 and MMJJ_RS02155 are separated by 21 nucleotidesMMJJ_RS02155 and MMJJ_RS02160 are separated by 77 nucleotidesMMJJ_RS02160 and MMJJ_RS02165 are separated by 34 nucleotidesMMJJ_RS02165 and MMJJ_RS02170 are separated by 169 nucleotides MMJJ_RS02150: MMJJ_RS02150 - ornithine carbamoyltransferase, at 408,476 to 409,390 _RS02150 MMJJ_RS02155: MMJJ_RS02155 - DMT family transporter, at 409,412 to 410,302 _RS02155 MMJJ_RS02160: MMJJ_RS02160 - amino acid ABC transporter permease, at 410,380 to 411,039 _RS02160 MMJJ_RS02165: MMJJ_RS02165 - ABC transporter substrate-binding protein, at 411,074 to 411,868 _RS02165 MMJJ_RS02170: MMJJ_RS02170 - 2-thiouracil desulfurase family protein, at 412,038 to 412,586 _RS02170 Position (kb) 410 411 412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 409.399 kb on - strandat 409.406 kb on - strandat 409.427 kb on + strandat 409.427 kb on + strandat 409.454 kb on + strandat 409.460 kb on - strandat 409.461 kb on + strandat 409.461 kb on + strandat 409.523 kb on - strand, within MMJJ_RS02155at 409.547 kb on - strand, within MMJJ_RS02155at 409.611 kb on + strand, within MMJJ_RS02155at 409.652 kb on + strand, within MMJJ_RS02155at 409.694 kb on - strandat 409.717 kb on + strand, within MMJJ_RS02155at 409.717 kb on + strand, within MMJJ_RS02155at 409.759 kb on - strand, within MMJJ_RS02155at 409.760 kb on + strand, within MMJJ_RS02155at 409.763 kb on - strand, within MMJJ_RS02155at 409.763 kb on - strand, within MMJJ_RS02155at 409.764 kb on + strand, within MMJJ_RS02155at 409.764 kb on + strand, within MMJJ_RS02155at 409.768 kb on + strand, within MMJJ_RS02155at 409.775 kb on - strand, within MMJJ_RS02155at 409.813 kb on + strand, within MMJJ_RS02155at 409.826 kb on - strand, within MMJJ_RS02155at 409.847 kb on - strand, within MMJJ_RS02155at 409.848 kb on + strand, within MMJJ_RS02155at 409.857 kb on - strand, within MMJJ_RS02155at 409.896 kb on - strand, within MMJJ_RS02155at 409.933 kb on - strand, within MMJJ_RS02155at 409.933 kb on - strand, within MMJJ_RS02155at 409.997 kb on + strand, within MMJJ_RS02155at 410.008 kb on - strand, within MMJJ_RS02155at 410.027 kb on - strand, within MMJJ_RS02155at 410.027 kb on - strand, within MMJJ_RS02155at 410.031 kb on - strand, within MMJJ_RS02155at 410.031 kb on - strand, within MMJJ_RS02155at 410.032 kb on + strand, within MMJJ_RS02155at 410.032 kb on + strand, within MMJJ_RS02155at 410.032 kb on + strand, within MMJJ_RS02155at 410.032 kb on + strand, within MMJJ_RS02155at 410.036 kb on + strand, within MMJJ_RS02155at 410.038 kb on + strand, within MMJJ_RS02155at 410.047 kb on + strand, within MMJJ_RS02155at 410.047 kb on + strand, within MMJJ_RS02155at 410.086 kb on + strand, within MMJJ_RS02155at 410.150 kb on - strand, within MMJJ_RS02155at 410.151 kb on + strand, within MMJJ_RS02155at 410.275 kb on - strandat 410.276 kb on + strandat 410.305 kb on - strandat 410.331 kb on - strandat 410.351 kb on - strandat 410.352 kb on + strandat 410.352 kb on + strandat 410.352 kb on + strandat 410.355 kb on - strandat 410.356 kb on + strandat 410.356 kb on + strandat 410.370 kb on - strandat 410.371 kb on + strandat 410.374 kb on - strandat 410.438 kb on + strandat 410.457 kb on + strand, within MMJJ_RS02160at 410.460 kb on - strand, within MMJJ_RS02160at 410.460 kb on - strand, within MMJJ_RS02160at 410.460 kb on - strand, within MMJJ_RS02160at 410.461 kb on + strand, within MMJJ_RS02160at 410.461 kb on + strand, within MMJJ_RS02160at 410.474 kb on + strand, within MMJJ_RS02160at 410.477 kb on - strand, within MMJJ_RS02160at 410.477 kb on - strand, within MMJJ_RS02160at 410.478 kb on + strand, within MMJJ_RS02160at 410.508 kb on + strand, within MMJJ_RS02160at 410.513 kb on + strand, within MMJJ_RS02160at 410.555 kb on + strand, within MMJJ_RS02160at 410.593 kb on - strand, within MMJJ_RS02160at 410.611 kb on - strand, within MMJJ_RS02160at 410.637 kb on - strand, within MMJJ_RS02160at 410.638 kb on + strand, within MMJJ_RS02160at 410.639 kb on - strand, within MMJJ_RS02160at 410.646 kb on - strand, within MMJJ_RS02160at 410.737 kb on + strand, within MMJJ_RS02160at 410.794 kb on + strand, within MMJJ_RS02160at 410.819 kb on - strand, within MMJJ_RS02160at 410.820 kb on + strand, within MMJJ_RS02160at 410.870 kb on - strand, within MMJJ_RS02160at 410.871 kb on + strand, within MMJJ_RS02160at 410.871 kb on + strand, within MMJJ_RS02160at 410.878 kb on - strand, within MMJJ_RS02160at 410.884 kb on - strand, within MMJJ_RS02160at 410.885 kb on + strand, within MMJJ_RS02160at 411.055 kb on + strandat 411.080 kb on - strandat 411.081 kb on + strandat 411.081 kb on + strandat 411.161 kb on - strand, within MMJJ_RS02165at 411.162 kb on + strand, within MMJJ_RS02165at 411.191 kb on - strand, within MMJJ_RS02165at 411.260 kb on - strand, within MMJJ_RS02165at 411.261 kb on + strand, within MMJJ_RS02165at 411.261 kb on + strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.331 kb on + strand, within MMJJ_RS02165at 411.335 kb on + strand, within MMJJ_RS02165at 411.336 kb on - strand, within MMJJ_RS02165at 411.401 kb on - strand, within MMJJ_RS02165at 411.411 kb on + strand, within MMJJ_RS02165at 411.422 kb on - strand, within MMJJ_RS02165at 411.471 kb on + strand, within MMJJ_RS02165at 411.471 kb on + strand, within MMJJ_RS02165at 411.549 kb on + strand, within MMJJ_RS02165at 411.558 kb on - strand, within MMJJ_RS02165at 411.559 kb on + strand, within MMJJ_RS02165at 411.656 kb on - strand, within MMJJ_RS02165at 411.657 kb on + strand, within MMJJ_RS02165at 411.657 kb on + strand, within MMJJ_RS02165at 411.735 kb on + strand, within MMJJ_RS02165at 411.854 kb on - strandat 411.860 kb on + strandat 411.916 kb on - strandat 411.991 kb on + strandat 412.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM
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409,399 - +0.6
409,406 - -1.0
409,427 + -1.2
409,427 + +2.0
409,454 + +0.3
409,460 - -0.2
409,461 + -0.6
409,461 + -0.1
409,523 - MMJJ_RS02155 0.12 -1.4
409,547 - MMJJ_RS02155 0.15 -1.2
409,611 + MMJJ_RS02155 0.22 -1.0
409,652 + MMJJ_RS02155 0.27 -0.6
409,694 - +1.0
409,717 + MMJJ_RS02155 0.34 +1.0
409,717 + MMJJ_RS02155 0.34 +1.6
409,759 - MMJJ_RS02155 0.39 -1.7
409,760 + MMJJ_RS02155 0.39 +0.4
409,763 - MMJJ_RS02155 0.39 -0.8
409,763 - MMJJ_RS02155 0.39 +1.5
409,764 + MMJJ_RS02155 0.40 +1.5
409,764 + MMJJ_RS02155 0.40 +1.5
409,768 + MMJJ_RS02155 0.40 +0.9
409,775 - MMJJ_RS02155 0.41 -0.8
409,813 + MMJJ_RS02155 0.45 -1.4
409,826 - MMJJ_RS02155 0.46 +1.1
409,847 - MMJJ_RS02155 0.49 +0.8
409,848 + MMJJ_RS02155 0.49 -0.8
409,857 - MMJJ_RS02155 0.50 +1.2
409,896 - MMJJ_RS02155 0.54 +0.4
409,933 - MMJJ_RS02155 0.58 +1.5
409,933 - MMJJ_RS02155 0.58 -0.8
409,997 + MMJJ_RS02155 0.66 +0.1
410,008 - MMJJ_RS02155 0.67 -2.1
410,027 - MMJJ_RS02155 0.69 -0.1
410,027 - MMJJ_RS02155 0.69 -2.0
410,031 - MMJJ_RS02155 0.69 +0.3
410,031 - MMJJ_RS02155 0.69 +1.0
410,032 + MMJJ_RS02155 0.70 +0.1
410,032 + MMJJ_RS02155 0.70 -3.2
410,032 + MMJJ_RS02155 0.70 -0.7
410,032 + MMJJ_RS02155 0.70 -1.5
410,036 + MMJJ_RS02155 0.70 +1.2
410,038 + MMJJ_RS02155 0.70 -1.7
410,047 + MMJJ_RS02155 0.71 -1.0
410,047 + MMJJ_RS02155 0.71 +0.0
410,086 + MMJJ_RS02155 0.76 -0.3
410,150 - MMJJ_RS02155 0.83 -2.0
410,151 + MMJJ_RS02155 0.83 -1.4
410,275 - -0.1
410,276 + +0.5
410,305 - +1.8
410,331 - +0.8
410,351 - -0.0
410,352 + -1.8
410,352 + -1.5
410,352 + +1.3
410,355 - +0.7
410,356 + +0.2
410,356 + +2.0
410,370 - +0.4
410,371 + -0.2
410,374 - +1.5
410,438 + -1.9
410,457 + MMJJ_RS02160 0.12 +0.1
410,460 - MMJJ_RS02160 0.12 -0.6
410,460 - MMJJ_RS02160 0.12 -0.3
410,460 - MMJJ_RS02160 0.12 -0.8
410,461 + MMJJ_RS02160 0.12 +1.1
410,461 + MMJJ_RS02160 0.12 +0.7
410,474 + MMJJ_RS02160 0.14 -1.2
410,477 - MMJJ_RS02160 0.15 -1.9
410,477 - MMJJ_RS02160 0.15 +0.0
410,478 + MMJJ_RS02160 0.15 -0.4
410,508 + MMJJ_RS02160 0.19 -2.7
410,513 + MMJJ_RS02160 0.20 -2.4
410,555 + MMJJ_RS02160 0.27 +0.2
410,593 - MMJJ_RS02160 0.32 -2.1
410,611 - MMJJ_RS02160 0.35 -3.9
410,637 - MMJJ_RS02160 0.39 +0.6
410,638 + MMJJ_RS02160 0.39 -2.1
410,639 - MMJJ_RS02160 0.39 +2.1
410,646 - MMJJ_RS02160 0.40 +0.8
410,737 + MMJJ_RS02160 0.54 +0.2
410,794 + MMJJ_RS02160 0.63 +1.7
410,819 - MMJJ_RS02160 0.67 -1.4
410,820 + MMJJ_RS02160 0.67 -0.0
410,870 - MMJJ_RS02160 0.74 -2.1
410,871 + MMJJ_RS02160 0.74 +1.3
410,871 + MMJJ_RS02160 0.74 -0.1
410,878 - MMJJ_RS02160 0.75 +0.9
410,884 - MMJJ_RS02160 0.76 -0.3
410,885 + MMJJ_RS02160 0.77 +1.0
411,055 + -0.1
411,080 - +1.9
411,081 + -1.6
411,081 + +3.1
411,161 - MMJJ_RS02165 0.11 -3.3
411,162 + MMJJ_RS02165 0.11 +1.4
411,191 - MMJJ_RS02165 0.15 +2.6
411,260 - MMJJ_RS02165 0.23 +0.8
411,261 + MMJJ_RS02165 0.24 +0.6
411,261 + MMJJ_RS02165 0.24 +1.6
411,264 - MMJJ_RS02165 0.24 -1.2
411,264 - MMJJ_RS02165 0.24 +2.2
411,264 - MMJJ_RS02165 0.24 +0.9
411,265 + MMJJ_RS02165 0.24 -0.3
411,265 + MMJJ_RS02165 0.24 +0.8
411,265 + MMJJ_RS02165 0.24 -3.3
411,268 - MMJJ_RS02165 0.24 +0.7
411,268 - MMJJ_RS02165 0.24 +0.1
411,268 - MMJJ_RS02165 0.24 +0.1
411,331 + MMJJ_RS02165 0.32 -0.9
411,335 + MMJJ_RS02165 0.33 -3.7
411,336 - MMJJ_RS02165 0.33 -2.9
411,401 - MMJJ_RS02165 0.41 +0.4
411,411 + MMJJ_RS02165 0.42 +2.6
411,422 - MMJJ_RS02165 0.44 -0.3
411,471 + MMJJ_RS02165 0.50 -1.3
411,471 + MMJJ_RS02165 0.50 +1.5
411,549 + MMJJ_RS02165 0.60 -0.2
411,558 - MMJJ_RS02165 0.61 +1.1
411,559 + MMJJ_RS02165 0.61 -2.2
411,656 - MMJJ_RS02165 0.73 +1.6
411,657 + MMJJ_RS02165 0.73 -1.0
411,657 + MMJJ_RS02165 0.73 +2.2
411,735 + MMJJ_RS02165 0.83 -0.1
411,854 - -0.3
411,860 + -2.8
411,916 - -1.0
411,991 + +0.3
412,039 - +1.1

Or see this region's nucleotide sequence