Experiment: McCas_formate_complete hypophosphite 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01205 and MMJJ_RS01210 are separated by 74 nucleotides MMJJ_RS01210 and MMJJ_RS01215 are separated by 135 nucleotides
MMJJ_RS01205: MMJJ_RS01205 - DNA adenine methylase, at 231,336 to 232,256
_RS01205
MMJJ_RS01210: MMJJ_RS01210 - hypothetical protein, at 232,331 to 232,648
_RS01210
MMJJ_RS01215: MMJJ_RS01215 - MATE family efflux transporter, at 232,784 to 234,142
_RS01215
Position (kb) 232
233 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 231.402 kb on - strand at 231.431 kb on - strand, within MMJJ_RS01205 at 231.432 kb on + strand, within MMJJ_RS01205 at 231.442 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.477 kb on + strand, within MMJJ_RS01205 at 231.494 kb on - strand, within MMJJ_RS01205 at 231.505 kb on + strand, within MMJJ_RS01205 at 231.505 kb on + strand, within MMJJ_RS01205 at 231.508 kb on - strand at 231.508 kb on - strand, within MMJJ_RS01205 at 231.508 kb on - strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.534 kb on + strand, within MMJJ_RS01205 at 231.582 kb on + strand, within MMJJ_RS01205 at 231.582 kb on + strand, within MMJJ_RS01205 at 231.594 kb on + strand, within MMJJ_RS01205 at 231.599 kb on - strand, within MMJJ_RS01205 at 231.637 kb on - strand, within MMJJ_RS01205 at 231.638 kb on + strand, within MMJJ_RS01205 at 231.638 kb on + strand, within MMJJ_RS01205 at 231.639 kb on - strand, within MMJJ_RS01205 at 231.683 kb on - strand, within MMJJ_RS01205 at 231.685 kb on - strand, within MMJJ_RS01205 at 231.769 kb on - strand, within MMJJ_RS01205 at 231.770 kb on + strand, within MMJJ_RS01205 at 231.803 kb on - strand, within MMJJ_RS01205 at 231.813 kb on + strand, within MMJJ_RS01205 at 231.825 kb on + strand, within MMJJ_RS01205 at 231.891 kb on + strand, within MMJJ_RS01205 at 231.891 kb on + strand, within MMJJ_RS01205 at 231.916 kb on - strand, within MMJJ_RS01205 at 231.917 kb on + strand, within MMJJ_RS01205 at 231.927 kb on - strand, within MMJJ_RS01205 at 231.935 kb on + strand, within MMJJ_RS01205 at 231.937 kb on - strand, within MMJJ_RS01205 at 231.937 kb on - strand, within MMJJ_RS01205 at 231.938 kb on + strand, within MMJJ_RS01205 at 231.986 kb on - strand, within MMJJ_RS01205 at 232.006 kb on + strand, within MMJJ_RS01205 at 232.019 kb on - strand, within MMJJ_RS01205 at 232.034 kb on - strand, within MMJJ_RS01205 at 232.090 kb on - strand, within MMJJ_RS01205 at 232.275 kb on + strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.286 kb on + strand at 232.287 kb on - strand at 232.287 kb on - strand at 232.287 kb on - strand at 232.287 kb on - strand at 232.287 kb on - strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.291 kb on - strand at 232.292 kb on + strand at 232.293 kb on - strand at 232.347 kb on + strand at 232.352 kb on - strand at 232.352 kb on - strand at 232.353 kb on + strand at 232.353 kb on + strand at 232.353 kb on + strand at 232.404 kb on + strand, within MMJJ_RS01210 at 232.404 kb on + strand, within MMJJ_RS01210 at 232.478 kb on - strand, within MMJJ_RS01210 at 232.479 kb on + strand, within MMJJ_RS01210 at 232.648 kb on - strand at 232.648 kb on - strand at 232.649 kb on + strand at 232.650 kb on - strand at 232.650 kb on - strand at 232.650 kb on - strand at 232.651 kb on + strand at 232.664 kb on - strand at 232.665 kb on + strand at 232.667 kb on + strand at 232.667 kb on + strand at 232.667 kb on + strand at 232.683 kb on + strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.704 kb on + strand at 232.704 kb on + strand at 232.704 kb on + strand at 232.705 kb on - strand at 232.705 kb on - strand at 232.705 kb on - strand at 232.705 kb on - strand at 232.706 kb on + strand at 232.706 kb on + strand at 232.706 kb on + strand at 232.706 kb on + strand at 232.712 kb on - strand at 232.722 kb on - strand at 232.724 kb on - strand at 232.725 kb on + strand at 232.823 kb on + strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.834 kb on + strand at 232.834 kb on + strand at 232.838 kb on - strand at 232.838 kb on - strand at 232.838 kb on - strand at 232.838 kb on - strand at 232.838 kb on - strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.871 kb on + strand at 232.899 kb on - strand at 232.972 kb on - strand, within MMJJ_RS01215 at 232.973 kb on + strand, within MMJJ_RS01215 at 232.973 kb on + strand, within MMJJ_RS01215 at 233.013 kb on - strand, within MMJJ_RS01215 at 233.065 kb on + strand, within MMJJ_RS01215 at 233.065 kb on + strand, within MMJJ_RS01215 at 233.081 kb on - strand, within MMJJ_RS01215 at 233.081 kb on - strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.086 kb on - strand, within MMJJ_RS01215 at 233.088 kb on - strand, within MMJJ_RS01215 at 233.107 kb on - strand, within MMJJ_RS01215 at 233.108 kb on + strand, within MMJJ_RS01215 at 233.127 kb on - strand, within MMJJ_RS01215 at 233.128 kb on + strand, within MMJJ_RS01215 at 233.130 kb on - strand, within MMJJ_RS01215 at 233.131 kb on + strand, within MMJJ_RS01215 at 233.175 kb on - strand, within MMJJ_RS01215 at 233.175 kb on - strand, within MMJJ_RS01215 at 233.176 kb on + strand, within MMJJ_RS01215 at 233.176 kb on + strand, within MMJJ_RS01215 at 233.176 kb on + strand, within MMJJ_RS01215 at 233.176 kb on + strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.202 kb on - strand, within MMJJ_RS01215 at 233.254 kb on - strand, within MMJJ_RS01215 at 233.254 kb on - strand, within MMJJ_RS01215 at 233.254 kb on - strand, within MMJJ_RS01215 at 233.312 kb on + strand, within MMJJ_RS01215 at 233.318 kb on + strand, within MMJJ_RS01215 at 233.320 kb on + strand, within MMJJ_RS01215 at 233.327 kb on - strand, within MMJJ_RS01215 at 233.327 kb on - strand, within MMJJ_RS01215 at 233.329 kb on - strand, within MMJJ_RS01215 at 233.329 kb on - strand, within MMJJ_RS01215 at 233.330 kb on + strand, within MMJJ_RS01215 at 233.331 kb on - strand, within MMJJ_RS01215 at 233.331 kb on - strand, within MMJJ_RS01215 at 233.331 kb on - strand, within MMJJ_RS01215 at 233.332 kb on + strand, within MMJJ_RS01215 at 233.332 kb on + strand, within MMJJ_RS01215 at 233.337 kb on - strand, within MMJJ_RS01215 at 233.341 kb on - strand, within MMJJ_RS01215 at 233.342 kb on + strand, within MMJJ_RS01215 at 233.361 kb on - strand, within MMJJ_RS01215 at 233.416 kb on + strand, within MMJJ_RS01215 at 233.522 kb on + strand, within MMJJ_RS01215 at 233.554 kb on + strand, within MMJJ_RS01215 at 233.556 kb on - strand, within MMJJ_RS01215 at 233.616 kb on - strand, within MMJJ_RS01215 at 233.617 kb on + strand, within MMJJ_RS01215 at 233.619 kb on - strand, within MMJJ_RS01215 at 233.619 kb on - strand, within MMJJ_RS01215 at 233.621 kb on - strand, within MMJJ_RS01215 at 233.621 kb on - strand, within MMJJ_RS01215 at 233.621 kb on - strand, within MMJJ_RS01215 at 233.621 kb on - strand, within MMJJ_RS01215 at 233.622 kb on + strand, within MMJJ_RS01215 at 233.623 kb on - strand, within MMJJ_RS01215 at 233.623 kb on - strand, within MMJJ_RS01215 at 233.624 kb on + strand, within MMJJ_RS01215 at 233.648 kb on - strand, within MMJJ_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM remove 231,402 - +0.9 231,431 - MMJJ_RS01205 0.10 -2.6 231,432 + MMJJ_RS01205 0.10 -0.9 231,442 - MMJJ_RS01205 0.12 +0.3 231,476 - MMJJ_RS01205 0.15 +2.8 231,476 - MMJJ_RS01205 0.15 -1.2 231,476 - MMJJ_RS01205 0.15 +0.7 231,477 + MMJJ_RS01205 0.15 -3.5 231,494 - MMJJ_RS01205 0.17 -0.8 231,505 + MMJJ_RS01205 0.18 -0.0 231,505 + MMJJ_RS01205 0.18 -1.6 231,508 - -0.1 231,508 - MMJJ_RS01205 0.19 -0.0 231,508 - MMJJ_RS01205 0.19 +0.7 231,509 + MMJJ_RS01205 0.19 +0.6 231,509 + MMJJ_RS01205 0.19 +0.6 231,509 + MMJJ_RS01205 0.19 +1.2 231,509 + MMJJ_RS01205 0.19 -0.2 231,509 + MMJJ_RS01205 0.19 +0.7 231,534 + MMJJ_RS01205 0.21 +0.6 231,582 + MMJJ_RS01205 0.27 +0.8 231,582 + MMJJ_RS01205 0.27 +0.4 231,594 + MMJJ_RS01205 0.28 -2.6 231,599 - MMJJ_RS01205 0.29 -0.1 231,637 - MMJJ_RS01205 0.33 +1.3 231,638 + MMJJ_RS01205 0.33 +0.7 231,638 + MMJJ_RS01205 0.33 -1.6 231,639 - MMJJ_RS01205 0.33 -1.0 231,683 - MMJJ_RS01205 0.38 +0.3 231,685 - MMJJ_RS01205 0.38 -1.4 231,769 - MMJJ_RS01205 0.47 -0.5 231,770 + MMJJ_RS01205 0.47 -0.4 231,803 - MMJJ_RS01205 0.51 -1.0 231,813 + MMJJ_RS01205 0.52 +2.5 231,825 + MMJJ_RS01205 0.53 -1.3 231,891 + MMJJ_RS01205 0.60 -0.6 231,891 + MMJJ_RS01205 0.60 -0.2 231,916 - MMJJ_RS01205 0.63 +0.5 231,917 + MMJJ_RS01205 0.63 -0.3 231,927 - MMJJ_RS01205 0.64 -2.9 231,935 + MMJJ_RS01205 0.65 +0.3 231,937 - MMJJ_RS01205 0.65 +1.4 231,937 - MMJJ_RS01205 0.65 -0.9 231,938 + MMJJ_RS01205 0.65 -1.2 231,986 - MMJJ_RS01205 0.71 -1.5 232,006 + MMJJ_RS01205 0.73 +0.6 232,019 - MMJJ_RS01205 0.74 -2.0 232,034 - MMJJ_RS01205 0.76 -0.2 232,090 - MMJJ_RS01205 0.82 -1.7 232,275 + +0.9 232,285 - +0.4 232,285 - +0.8 232,286 + +1.1 232,287 - -1.1 232,287 - -4.9 232,287 - -1.7 232,287 - -0.4 232,287 - -0.6 232,288 + +0.7 232,288 + +2.0 232,288 + -0.5 232,288 + -0.5 232,288 + +0.1 232,288 + -1.4 232,288 + -2.4 232,291 - +0.9 232,292 + +0.3 232,293 - -2.2 232,347 + -2.5 232,352 - -0.8 232,352 - +0.7 232,353 + -1.7 232,353 + -2.0 232,353 + +0.7 232,404 + MMJJ_RS01210 0.23 +1.8 232,404 + MMJJ_RS01210 0.23 +0.8 232,478 - MMJJ_RS01210 0.46 -0.3 232,479 + MMJJ_RS01210 0.47 -2.2 232,648 - -2.0 232,648 - +1.3 232,649 + +2.1 232,650 - -0.6 232,650 - +0.8 232,650 - -0.4 232,651 + +0.1 232,664 - +0.6 232,665 + +0.5 232,667 + +0.1 232,667 + -0.5 232,667 + -2.6 232,683 + -1.7 232,701 - +3.9 232,701 - -2.3 232,701 - +0.4 232,701 - -1.9 232,701 - +2.5 232,701 - -4.0 232,702 + -1.2 232,702 + +0.1 232,702 + +0.2 232,702 + +0.6 232,702 + -0.8 232,702 + +0.9 232,702 + -0.2 232,702 + -0.9 232,702 + -0.7 232,702 + -1.3 232,703 - +1.3 232,703 - -0.1 232,703 - -0.3 232,703 - -1.3 232,703 - +1.6 232,703 - -3.5 232,704 + -0.7 232,704 + +0.4 232,704 + -4.2 232,705 - -1.1 232,705 - -0.5 232,705 - +0.5 232,705 - +1.6 232,706 + -0.7 232,706 + -2.3 232,706 + -1.0 232,706 + -0.3 232,712 - -1.0 232,722 - -3.9 232,724 - -1.2 232,725 + +0.1 232,823 + -0.2 232,833 - -1.8 232,833 - +1.3 232,834 + -0.7 232,834 + +1.3 232,838 - -0.3 232,838 - +0.3 232,838 - +0.9 232,838 - -2.7 232,838 - -0.2 232,839 + -2.6 232,839 + -0.4 232,839 + +0.0 232,839 + -0.7 232,839 + +0.3 232,839 + +0.1 232,839 + -2.6 232,871 + -0.3 232,899 - -3.9 232,972 - MMJJ_RS01215 0.14 +1.4 232,973 + MMJJ_RS01215 0.14 +0.1 232,973 + MMJJ_RS01215 0.14 +0.3 233,013 - MMJJ_RS01215 0.17 +0.6 233,065 + MMJJ_RS01215 0.21 -0.4 233,065 + MMJJ_RS01215 0.21 -1.1 233,081 - MMJJ_RS01215 0.22 -0.3 233,081 - MMJJ_RS01215 0.22 +1.7 233,082 + MMJJ_RS01215 0.22 -1.9 233,082 + MMJJ_RS01215 0.22 -2.7 233,082 + MMJJ_RS01215 0.22 -2.5 233,082 + MMJJ_RS01215 0.22 -0.9 233,082 + MMJJ_RS01215 0.22 -0.0 233,086 - MMJJ_RS01215 0.22 -1.9 233,088 - MMJJ_RS01215 0.22 +1.2 233,107 - MMJJ_RS01215 0.24 +0.4 233,108 + MMJJ_RS01215 0.24 -3.9 233,127 - MMJJ_RS01215 0.25 +1.2 233,128 + MMJJ_RS01215 0.25 -0.3 233,130 - MMJJ_RS01215 0.25 +1.9 233,131 + MMJJ_RS01215 0.26 -1.1 233,175 - MMJJ_RS01215 0.29 +0.1 233,175 - MMJJ_RS01215 0.29 +0.2 233,176 + MMJJ_RS01215 0.29 -0.3 233,176 + MMJJ_RS01215 0.29 +0.9 233,176 + MMJJ_RS01215 0.29 -0.8 233,176 + MMJJ_RS01215 0.29 +1.5 233,177 - MMJJ_RS01215 0.29 -1.7 233,177 - MMJJ_RS01215 0.29 +0.3 233,177 - MMJJ_RS01215 0.29 +0.3 233,177 - MMJJ_RS01215 0.29 +1.6 233,177 - MMJJ_RS01215 0.29 +1.1 233,177 - MMJJ_RS01215 0.29 -0.7 233,177 - MMJJ_RS01215 0.29 -0.6 233,178 + MMJJ_RS01215 0.29 +0.6 233,178 + MMJJ_RS01215 0.29 -2.8 233,178 + MMJJ_RS01215 0.29 +2.6 233,178 + MMJJ_RS01215 0.29 +1.4 233,178 + MMJJ_RS01215 0.29 +0.5 233,178 + MMJJ_RS01215 0.29 -0.4 233,178 + MMJJ_RS01215 0.29 -0.7 233,202 - MMJJ_RS01215 0.31 -0.1 233,254 - MMJJ_RS01215 0.35 +0.1 233,254 - MMJJ_RS01215 0.35 +0.7 233,254 - MMJJ_RS01215 0.35 +0.2 233,312 + MMJJ_RS01215 0.39 -2.2 233,318 + MMJJ_RS01215 0.39 -2.7 233,320 + MMJJ_RS01215 0.39 +0.2 233,327 - MMJJ_RS01215 0.40 -0.3 233,327 - MMJJ_RS01215 0.40 -2.3 233,329 - MMJJ_RS01215 0.40 -0.9 233,329 - MMJJ_RS01215 0.40 -2.0 233,330 + MMJJ_RS01215 0.40 -1.8 233,331 - MMJJ_RS01215 0.40 +2.0 233,331 - MMJJ_RS01215 0.40 -1.1 233,331 - MMJJ_RS01215 0.40 +0.1 233,332 + MMJJ_RS01215 0.40 -0.3 233,332 + MMJJ_RS01215 0.40 -1.7 233,337 - MMJJ_RS01215 0.41 -2.9 233,341 - MMJJ_RS01215 0.41 -1.4 233,342 + MMJJ_RS01215 0.41 +1.2 233,361 - MMJJ_RS01215 0.42 +0.8 233,416 + MMJJ_RS01215 0.47 +0.3 233,522 + MMJJ_RS01215 0.54 -2.9 233,554 + MMJJ_RS01215 0.57 -0.2 233,556 - MMJJ_RS01215 0.57 -0.8 233,616 - MMJJ_RS01215 0.61 +0.4 233,617 + MMJJ_RS01215 0.61 +2.2 233,619 - MMJJ_RS01215 0.61 -2.9 233,619 - MMJJ_RS01215 0.61 -0.7 233,621 - MMJJ_RS01215 0.62 +1.1 233,621 - MMJJ_RS01215 0.62 +0.2 233,621 - MMJJ_RS01215 0.62 -2.0 233,621 - MMJJ_RS01215 0.62 -1.6 233,622 + MMJJ_RS01215 0.62 -0.1 233,623 - MMJJ_RS01215 0.62 -1.0 233,623 - MMJJ_RS01215 0.62 +0.1 233,624 + MMJJ_RS01215 0.62 -3.5 233,648 - MMJJ_RS01215 0.64 -1.1
Or see this region's nucleotide sequence