Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00085

Experiment: McCas_formate_complete hypophosphite 62.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete hypophosphite 62.5 mM
15,409	-		MMJJ_RS00075	0.84	-2.6
15,433	-		MMJJ_RS00075	0.87	-0.2
15,434	+		MMJJ_RS00075	0.87	-0.7
15,464	+				-1.3
15,464	+				-4.7
15,465	-				-1.4
15,465	-				-3.4
15,465	-				-0.9
15,465	-				-1.1
15,466	+				-0.9
15,473	+				-3.4
15,516	-				-1.0
15,655	+		MMJJ_RS00080	0.19	-0.7
15,655	+		MMJJ_RS00080	0.19	-2.7
15,748	+		MMJJ_RS00080	0.33	-2.7
15,748	+		MMJJ_RS00080	0.33	-1.4
15,832	+		MMJJ_RS00080	0.46	-0.8
15,876	-		MMJJ_RS00080	0.53	+0.1
15,876	-		MMJJ_RS00080	0.53	-2.2
15,876	-		MMJJ_RS00080	0.53	-3.2
15,937	+		MMJJ_RS00080	0.62	-2.4
15,937	+		MMJJ_RS00080	0.62	-1.6
15,937	+		MMJJ_RS00080	0.62	-2.9
15,937	+		MMJJ_RS00080	0.62	-1.8
15,937	+		MMJJ_RS00080	0.62	-2.6
15,939	-		MMJJ_RS00080	0.63	-1.3
15,939	-		MMJJ_RS00080	0.63	-1.1
15,939	-		MMJJ_RS00080	0.63	-1.1
15,939	-		MMJJ_RS00080	0.63	+0.3
15,939	-		MMJJ_RS00080	0.63	-3.7
15,939	-		MMJJ_RS00080	0.63	+0.8
15,939	-		MMJJ_RS00080	0.63	-0.2
15,940	+		MMJJ_RS00080	0.63	-1.6
15,940	+		MMJJ_RS00080	0.63	-1.3
15,940	+		MMJJ_RS00080	0.63	-1.0
15,941	-		MMJJ_RS00080	0.63	-1.3
15,941	-		MMJJ_RS00080	0.63	-2.4
15,941	-		MMJJ_RS00080	0.63	-2.7
15,941	-		MMJJ_RS00080	0.63	-0.9
15,942	+		MMJJ_RS00080	0.63	+0.8
15,942	+		MMJJ_RS00080	0.63	-3.7
15,942	+		MMJJ_RS00080	0.63	-2.4
15,942	+		MMJJ_RS00080	0.63	-0.9
15,944	+		MMJJ_RS00080	0.63	-2.6
15,958	-		MMJJ_RS00080	0.65	-0.4
15,997	+		MMJJ_RS00080	0.71	-3.5
15,997	+		MMJJ_RS00080	0.71	+0.3
15,999	-		MMJJ_RS00080	0.72	-2.2
16,003	-		MMJJ_RS00080	0.72	-1.8
16,003	-		MMJJ_RS00080	0.72	+0.5
16,003	-		MMJJ_RS00080	0.72	-4.5
16,004	+		MMJJ_RS00080	0.72	-1.5
16,004	+		MMJJ_RS00080	0.72	-2.3
16,074	+		MMJJ_RS00080	0.83	-1.6
16,074	+		MMJJ_RS00080	0.83	-2.1
16,100	-		MMJJ_RS00080	0.87	-0.6
16,103	-		MMJJ_RS00080	0.88	-1.1
16,103	-		MMJJ_RS00080	0.88	-2.8
16,105	-		MMJJ_RS00080	0.88	-2.3
16,127	-				-0.2
16,139	+				-2.1
16,139	+				-1.0
16,212	-				-2.4
16,212	-				+0.4
16,214	-				-1.3
16,215	+				-0.9
16,215	+				-1.3
16,226	-				-0.4
16,226	-				-0.1
16,226	-				-3.9
16,226	-				+0.3
16,226	-				+0.3
16,226	-				+1.4
16,226	-				-0.0
16,227	+				-1.1
16,227	+				-1.7
16,227	+				-1.9
16,227	+				-2.5
16,227	+				+0.2
16,227	+				+0.1
16,227	+				-0.1
16,227	+				+0.9
16,228	-				-0.7
16,228	-				-0.4
16,229	+				-2.1
16,229	+				-0.5
16,230	-				-1.5
16,230	-				+0.6
16,235	+				-0.4
16,266	+				-0.4
16,307	-				+1.5
16,307	-				+3.1
16,307	-				-0.9
16,307	-				+1.7
16,308	+				-0.0
16,308	+				+2.0
16,308	+				-1.2
16,336	+				-0.7
16,349	+				-0.9
16,400	-				+1.0
16,401	+				+0.7
16,401	+				+1.2
16,415	-				+1.3
16,468	-				-0.1
16,469	+				-1.1
16,724	-		MMJJ_RS00085	0.38	-1.3
16,725	+		MMJJ_RS00085	0.38	-0.5
16,725	+		MMJJ_RS00085	0.38	+0.9
16,742	+		MMJJ_RS00085	0.40	+0.4
16,759	+		MMJJ_RS00085	0.42	-0.8
16,803	-		MMJJ_RS00085	0.47	-0.1
16,803	-		MMJJ_RS00085	0.47	+1.4
16,993	-		MMJJ_RS00085	0.69	+0.3
17,001	-		MMJJ_RS00085	0.70	+0.1
17,002	+		MMJJ_RS00085	0.70	+0.5
17,009	+		MMJJ_RS00085	0.71	-2.2
17,020	-		MMJJ_RS00085	0.72	+0.1
17,020	-		MMJJ_RS00085	0.72	+1.6
17,065	+		MMJJ_RS00085	0.78	+2.1
17,070	-		MMJJ_RS00085	0.78	-0.3
17,071	+		MMJJ_RS00085	0.78	-0.1
17,086	-		MMJJ_RS00085	0.80	+1.4
17,093	-		MMJJ_RS00085	0.81	+0.7
17,093	-		MMJJ_RS00085	0.81	-0.2
17,093	-		MMJJ_RS00085	0.81	-2.9
17,093	-		MMJJ_RS00085	0.81	-0.1
17,093	-		MMJJ_RS00085	0.81	-3.2
17,094	+		MMJJ_RS00085	0.81	+0.0
17,094	+		MMJJ_RS00085	0.81	+0.0
17,094	+		MMJJ_RS00085	0.81	+3.9
17,094	+		MMJJ_RS00085	0.81	+1.1
17,106	-		MMJJ_RS00085	0.83	+0.7
17,106	-		MMJJ_RS00085	0.83	-1.5
17,107	+		MMJJ_RS00085	0.83	-1.9
17,107	+		MMJJ_RS00085	0.83	+0.2
17,117	-		MMJJ_RS00085	0.84	+1.2
17,117	-		MMJJ_RS00085	0.84	+0.5
17,117	-		MMJJ_RS00085	0.84	-1.8
17,117	-		MMJJ_RS00085	0.84	+0.8
17,117	-		MMJJ_RS00085	0.84	+0.5
17,118	+		MMJJ_RS00085	0.84	+1.9
17,118	+		MMJJ_RS00085	0.84	-0.3
17,118	+		MMJJ_RS00085	0.84	-0.8
17,118	+		MMJJ_RS00085	0.84	-2.6
17,123	-		MMJJ_RS00085	0.85	-0.2
17,158	-		MMJJ_RS00085	0.89	-2.6
17,159	+		MMJJ_RS00085	0.89	+1.4
17,179	-				+1.0
17,187	-				+1.9
17,187	-				-0.7
17,187	-				-0.9
17,188	+				+0.6
17,211	-				+2.9
17,212	+				-1.7
17,213	-				+0.4
17,222	-				+0.2
17,223	+				-0.8
17,249	+				-0.0
17,253	+				-2.2
17,275	-				-4.0
17,281	+				+0.1
17,329	-				-3.0
17,329	-				-0.4
17,335	-				-0.5
17,403	-		MMJJ_RS00090	0.15	-0.8
17,409	-		MMJJ_RS00090	0.16	+0.1
17,415	-		MMJJ_RS00090	0.17	-4.5
17,445	-		MMJJ_RS00090	0.21	+1.7
17,469	-		MMJJ_RS00090	0.25	-3.5
17,469	-		MMJJ_RS00090	0.25	+0.1
17,469	-		MMJJ_RS00090	0.25	-3.3
17,470	+		MMJJ_RS00090	0.25	-2.4
17,522	-		MMJJ_RS00090	0.33	+0.5
17,522	-		MMJJ_RS00090	0.33	+0.2
17,523	+		MMJJ_RS00090	0.33	-1.2
17,533	-		MMJJ_RS00090	0.34	-0.2
17,559	-		MMJJ_RS00090	0.38	+1.0
17,559	-		MMJJ_RS00090	0.38	+0.2
17,560	+		MMJJ_RS00090	0.38	-3.9
17,577	-		MMJJ_RS00090	0.41	-1.2
17,577	-		MMJJ_RS00090	0.41	-0.1
17,631	-				-0.4
17,649	-		MMJJ_RS00090	0.52	+2.2
17,653	+		MMJJ_RS00090	0.53	-2.6
17,662	+		MMJJ_RS00090	0.54	+1.9
17,723	-		MMJJ_RS00090	0.63	-3.0
17,727	-		MMJJ_RS00090	0.64	+1.3
17,793	+		MMJJ_RS00090	0.74	-0.3
17,795	-		MMJJ_RS00090	0.74	-2.2
17,806	-		MMJJ_RS00090	0.76	+1.4
17,806	-		MMJJ_RS00090	0.76	-1.6
17,807	+		MMJJ_RS00090	0.76	+0.2
17,807	+		MMJJ_RS00090	0.76	+1.3
17,809	+		MMJJ_RS00090	0.76	+1.9
17,809	+		MMJJ_RS00090	0.76	+1.2
17,809	+		MMJJ_RS00090	0.76	-4.3
17,809	-		MMJJ_RS00090	0.76	-2.4
17,833	+		MMJJ_RS00090	0.80	+1.5
17,864	-		MMJJ_RS00090	0.85	-1.4
17,865	+		MMJJ_RS00090	0.85	+0.0
17,866	-		MMJJ_RS00090	0.85	-1.1
17,866	-		MMJJ_RS00090	0.85	-0.3
17,866	-		MMJJ_RS00090	0.85	-2.1
17,867	+		MMJJ_RS00090	0.85	-0.3
17,867	+		MMJJ_RS00090	0.85	+1.1
17,978	+				-1.7
17,996	-				-1.4
18,022	+				+5.6
18,025	-				-2.6
18,026	+				+0.8
18,026	+				+0.3
18,054	+		MMJJ_RS00095	0.12	-1.3
18,098	-		MMJJ_RS00095	0.17	+1.4
18,098	-		MMJJ_RS00095	0.17	-2.3
18,098	-		MMJJ_RS00095	0.17	+1.3
18,098	-		MMJJ_RS00095	0.17	+1.9
18,099	+		MMJJ_RS00095	0.17	+0.3
18,099	+		MMJJ_RS00095	0.17	-0.7
18,099	+		MMJJ_RS00095	0.17	-2.0
18,099	+		MMJJ_RS00095	0.17	+0.6
18,100	-		MMJJ_RS00095	0.17	+1.8
18,100	-		MMJJ_RS00095	0.17	-1.9
18,101	+		MMJJ_RS00095	0.17	+0.8
18,108	+		MMJJ_RS00095	0.18	-1.9
18,125	+		MMJJ_RS00095	0.20	-0.2
18,151	-		MMJJ_RS00095	0.23	-0.1
18,161	+		MMJJ_RS00095	0.24	-0.1
18,161	+		MMJJ_RS00095	0.24	-0.7
18,225	+		MMJJ_RS00095	0.32	-2.7
18,237	+		MMJJ_RS00095	0.33	-1.0