Experiment: McCas_formate_complete Polymyxin B sulfate 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04165 and MMJJ_RS04170 are separated by 146 nucleotides MMJJ_RS04170 and MMJJ_RS04175 are separated by 369 nucleotides
MMJJ_RS04165: MMJJ_RS04165 - sodium:solute symporter, at 773,971 to 775,440
_RS04165
MMJJ_RS04170: MMJJ_RS04170 - manganese-dependent inorganic pyrophosphatase, at 775,587 to 776,510
_RS04170
MMJJ_RS04175: MMJJ_RS04175 - hypothetical protein, at 776,880 to 777,617
_RS04175
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 774.589 kb on + strand, within MMJJ_RS04165 at 774.589 kb on + strand, within MMJJ_RS04165 at 774.590 kb on - strand, within MMJJ_RS04165 at 774.590 kb on - strand, within MMJJ_RS04165 at 774.591 kb on + strand, within MMJJ_RS04165 at 774.607 kb on + strand, within MMJJ_RS04165 at 774.613 kb on + strand, within MMJJ_RS04165 at 774.667 kb on - strand, within MMJJ_RS04165 at 774.681 kb on - strand, within MMJJ_RS04165 at 774.682 kb on + strand, within MMJJ_RS04165 at 774.685 kb on - strand, within MMJJ_RS04165 at 774.764 kb on + strand, within MMJJ_RS04165 at 774.788 kb on + strand, within MMJJ_RS04165 at 774.788 kb on + strand, within MMJJ_RS04165 at 774.874 kb on - strand, within MMJJ_RS04165 at 774.875 kb on + strand, within MMJJ_RS04165 at 774.933 kb on + strand, within MMJJ_RS04165 at 774.933 kb on + strand, within MMJJ_RS04165 at 774.968 kb on - strand, within MMJJ_RS04165 at 774.986 kb on + strand, within MMJJ_RS04165 at 775.021 kb on + strand, within MMJJ_RS04165 at 775.027 kb on + strand, within MMJJ_RS04165 at 775.095 kb on - strand, within MMJJ_RS04165 at 775.096 kb on + strand, within MMJJ_RS04165 at 775.116 kb on - strand, within MMJJ_RS04165 at 775.197 kb on - strand, within MMJJ_RS04165 at 775.204 kb on + strand, within MMJJ_RS04165 at 775.216 kb on - strand, within MMJJ_RS04165 at 775.270 kb on + strand, within MMJJ_RS04165 at 775.327 kb on - strand at 775.327 kb on - strand at 775.328 kb on + strand at 775.345 kb on - strand at 775.390 kb on - strand at 775.390 kb on - strand at 775.391 kb on + strand at 775.391 kb on + strand at 775.391 kb on + strand at 775.396 kb on - strand at 775.397 kb on + strand at 775.397 kb on + strand at 775.410 kb on - strand at 775.410 kb on - strand at 775.410 kb on - strand at 775.411 kb on + strand at 775.412 kb on - strand at 775.412 kb on - strand at 775.440 kb on - strand at 775.440 kb on - strand at 775.441 kb on + strand at 775.441 kb on + strand at 775.441 kb on + strand at 775.494 kb on - strand at 775.496 kb on - strand at 775.497 kb on + strand at 775.497 kb on + strand at 775.497 kb on + strand at 775.503 kb on - strand at 775.523 kb on - strand at 775.523 kb on - strand at 775.523 kb on - strand at 775.524 kb on + strand at 775.524 kb on + strand at 775.526 kb on + strand at 775.526 kb on + strand at 775.526 kb on + strand at 775.530 kb on + strand at 775.576 kb on + strand at 775.589 kb on + strand at 776.497 kb on + strand at 776.513 kb on + strand at 776.550 kb on - strand at 776.555 kb on + strand at 776.570 kb on + strand at 776.571 kb on - strand at 776.572 kb on + strand at 776.576 kb on + strand at 776.576 kb on + strand at 776.576 kb on + strand at 776.576 kb on + strand at 776.576 kb on + strand at 776.576 kb on + strand at 776.576 kb on + strand at 776.579 kb on - strand at 776.579 kb on - strand at 776.585 kb on - strand at 776.585 kb on - strand at 776.586 kb on + strand at 776.586 kb on + strand at 776.589 kb on - strand at 776.589 kb on - strand at 776.589 kb on - strand at 776.589 kb on - strand at 776.590 kb on + strand at 776.590 kb on + strand at 776.590 kb on + strand at 776.590 kb on + strand at 776.592 kb on - strand at 776.592 kb on - strand at 776.592 kb on - strand at 776.592 kb on - strand at 776.595 kb on - strand at 776.609 kb on + strand at 776.617 kb on - strand at 776.617 kb on - strand at 776.618 kb on + strand at 776.618 kb on + strand at 776.618 kb on + strand at 776.618 kb on + strand at 776.634 kb on - strand at 776.635 kb on + strand at 776.679 kb on - strand at 776.679 kb on - strand at 776.702 kb on - strand at 776.703 kb on + strand at 776.703 kb on + strand at 776.703 kb on + strand at 776.703 kb on + strand at 776.713 kb on + strand at 776.722 kb on + strand at 776.735 kb on - strand at 776.751 kb on + strand at 776.756 kb on + strand at 776.756 kb on + strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.767 kb on + strand at 776.767 kb on + strand at 776.788 kb on - strand at 776.809 kb on + strand at 776.850 kb on - strand at 776.882 kb on + strand at 776.975 kb on + strand, within MMJJ_RS04175 at 776.989 kb on + strand, within MMJJ_RS04175 at 777.112 kb on + strand, within MMJJ_RS04175 at 777.209 kb on - strand, within MMJJ_RS04175 at 777.209 kb on - strand, within MMJJ_RS04175 at 777.234 kb on + strand, within MMJJ_RS04175 at 777.234 kb on + strand, within MMJJ_RS04175 at 777.309 kb on + strand, within MMJJ_RS04175 at 777.393 kb on - strand, within MMJJ_RS04175 at 777.396 kb on - strand, within MMJJ_RS04175 at 777.403 kb on + strand, within MMJJ_RS04175 at 777.454 kb on + strand, within MMJJ_RS04175 at 777.465 kb on - strand, within MMJJ_RS04175 at 777.492 kb on - strand, within MMJJ_RS04175 at 777.493 kb on + strand, within MMJJ_RS04175
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Polymyxin B sulfate 0.05 mM remove 774,589 + MMJJ_RS04165 0.42 -1.4 774,589 + MMJJ_RS04165 0.42 -0.0 774,590 - MMJJ_RS04165 0.42 +0.2 774,590 - MMJJ_RS04165 0.42 +1.2 774,591 + MMJJ_RS04165 0.42 -1.3 774,607 + MMJJ_RS04165 0.43 -0.8 774,613 + MMJJ_RS04165 0.44 +0.3 774,667 - MMJJ_RS04165 0.47 +3.1 774,681 - MMJJ_RS04165 0.48 -1.1 774,682 + MMJJ_RS04165 0.48 +0.3 774,685 - MMJJ_RS04165 0.49 -2.1 774,764 + MMJJ_RS04165 0.54 -1.3 774,788 + MMJJ_RS04165 0.56 -0.2 774,788 + MMJJ_RS04165 0.56 -3.2 774,874 - MMJJ_RS04165 0.61 +2.7 774,875 + MMJJ_RS04165 0.61 -1.5 774,933 + MMJJ_RS04165 0.65 -0.7 774,933 + MMJJ_RS04165 0.65 +0.8 774,968 - MMJJ_RS04165 0.68 +0.2 774,986 + MMJJ_RS04165 0.69 -1.0 775,021 + MMJJ_RS04165 0.71 +0.5 775,027 + MMJJ_RS04165 0.72 -1.1 775,095 - MMJJ_RS04165 0.76 +2.0 775,096 + MMJJ_RS04165 0.77 +2.4 775,116 - MMJJ_RS04165 0.78 -3.7 775,197 - MMJJ_RS04165 0.83 -0.3 775,204 + MMJJ_RS04165 0.84 -0.4 775,216 - MMJJ_RS04165 0.85 -0.4 775,270 + MMJJ_RS04165 0.88 +3.3 775,327 - +0.1 775,327 - +2.7 775,328 + +0.7 775,345 - -0.1 775,390 - +2.1 775,390 - -1.3 775,391 + +1.4 775,391 + -0.3 775,391 + +1.3 775,396 - -2.8 775,397 + +2.0 775,397 + +0.1 775,410 - +0.6 775,410 - +0.1 775,410 - +0.2 775,411 + +0.7 775,412 - +0.3 775,412 - -0.7 775,440 - -0.2 775,440 - -0.2 775,441 + -1.3 775,441 + -2.6 775,441 + +0.6 775,494 - +4.5 775,496 - +2.2 775,497 + +1.2 775,497 + +2.2 775,497 + -2.6 775,503 - +0.2 775,523 - -2.8 775,523 - +5.0 775,523 - +1.6 775,524 + -0.0 775,524 + -2.1 775,526 + +1.7 775,526 + -0.1 775,526 + -1.7 775,530 + +2.2 775,576 + +0.9 775,589 + -0.7 776,497 + -0.6 776,513 + -2.5 776,550 - -1.2 776,555 + +1.1 776,570 + -1.9 776,571 - -1.5 776,572 + -0.4 776,576 + +0.4 776,576 + -2.3 776,576 + -0.9 776,576 + +0.4 776,576 + -0.1 776,576 + -1.1 776,576 + -1.8 776,579 - -0.7 776,579 - +1.7 776,585 - +0.0 776,585 - -2.2 776,586 + +0.6 776,586 + +2.2 776,589 - -0.0 776,589 - -0.6 776,589 - +1.8 776,589 - +1.6 776,590 + -0.7 776,590 + -0.4 776,590 + -0.1 776,590 + +0.7 776,592 - -1.7 776,592 - -2.0 776,592 - +1.1 776,592 - -2.0 776,595 - -2.9 776,609 + -1.0 776,617 - +0.6 776,617 - +1.0 776,618 + +0.9 776,618 + -0.8 776,618 + +2.0 776,618 + +0.4 776,634 - +0.2 776,635 + +0.5 776,679 - -0.6 776,679 - -0.9 776,702 - -1.2 776,703 + +0.5 776,703 + -1.7 776,703 + +1.9 776,703 + +3.3 776,713 + -0.2 776,722 + -0.2 776,735 - +0.3 776,751 + -0.5 776,756 + +0.5 776,756 + +0.6 776,766 - -1.6 776,766 - +1.6 776,766 - +0.8 776,766 - +0.1 776,766 - -1.8 776,766 - -0.6 776,767 + -0.8 776,767 + +0.3 776,788 - +1.7 776,809 + +0.9 776,850 - -1.2 776,882 + +3.5 776,975 + MMJJ_RS04175 0.13 +1.3 776,989 + MMJJ_RS04175 0.15 -3.4 777,112 + MMJJ_RS04175 0.31 -1.3 777,209 - MMJJ_RS04175 0.45 -0.7 777,209 - MMJJ_RS04175 0.45 +1.2 777,234 + MMJJ_RS04175 0.48 -1.2 777,234 + MMJJ_RS04175 0.48 -0.6 777,309 + MMJJ_RS04175 0.58 -1.5 777,393 - MMJJ_RS04175 0.70 -1.3 777,396 - MMJJ_RS04175 0.70 -1.6 777,403 + MMJJ_RS04175 0.71 +1.0 777,454 + MMJJ_RS04175 0.78 +2.2 777,465 - MMJJ_RS04175 0.79 -1.4 777,492 - MMJJ_RS04175 0.83 -1.1 777,493 + MMJJ_RS04175 0.83 +0.4
Or see this region's nucleotide sequence