Experiment: McCas_formate_complete Polymyxin B sulfate 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04160 and MMJJ_RS04165 are separated by 197 nucleotides MMJJ_RS04165 and MMJJ_RS04170 are separated by 146 nucleotides
MMJJ_RS04160: MMJJ_RS04160 - sodium/proline symporter PutP, at 772,295 to 773,773
_RS04160
MMJJ_RS04165: MMJJ_RS04165 - sodium:solute symporter, at 773,971 to 775,440
_RS04165
MMJJ_RS04170: MMJJ_RS04170 - manganese-dependent inorganic pyrophosphatase, at 775,587 to 776,510
_RS04170
Position (kb) 773
774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 772.982 kb on + strand, within MMJJ_RS04160 at 772.988 kb on - strand, within MMJJ_RS04160 at 772.989 kb on + strand, within MMJJ_RS04160 at 773.014 kb on + strand, within MMJJ_RS04160 at 773.018 kb on - strand, within MMJJ_RS04160 at 773.051 kb on - strand, within MMJJ_RS04160 at 773.053 kb on - strand, within MMJJ_RS04160 at 773.054 kb on + strand, within MMJJ_RS04160 at 773.072 kb on - strand, within MMJJ_RS04160 at 773.105 kb on - strand, within MMJJ_RS04160 at 773.106 kb on + strand, within MMJJ_RS04160 at 773.106 kb on + strand, within MMJJ_RS04160 at 773.129 kb on + strand, within MMJJ_RS04160 at 773.164 kb on - strand, within MMJJ_RS04160 at 773.205 kb on + strand, within MMJJ_RS04160 at 773.248 kb on - strand, within MMJJ_RS04160 at 773.257 kb on - strand, within MMJJ_RS04160 at 773.262 kb on + strand, within MMJJ_RS04160 at 773.273 kb on - strand, within MMJJ_RS04160 at 773.274 kb on + strand, within MMJJ_RS04160 at 773.279 kb on + strand, within MMJJ_RS04160 at 773.291 kb on + strand, within MMJJ_RS04160 at 773.291 kb on + strand, within MMJJ_RS04160 at 773.293 kb on + strand, within MMJJ_RS04160 at 773.358 kb on + strand, within MMJJ_RS04160 at 773.447 kb on + strand, within MMJJ_RS04160 at 773.447 kb on + strand, within MMJJ_RS04160 at 773.449 kb on - strand, within MMJJ_RS04160 at 773.472 kb on - strand, within MMJJ_RS04160 at 773.479 kb on - strand, within MMJJ_RS04160 at 773.479 kb on - strand, within MMJJ_RS04160 at 773.479 kb on - strand, within MMJJ_RS04160 at 773.507 kb on - strand, within MMJJ_RS04160 at 773.512 kb on + strand, within MMJJ_RS04160 at 773.512 kb on + strand, within MMJJ_RS04160 at 773.512 kb on + strand, within MMJJ_RS04160 at 773.646 kb on + strand at 773.667 kb on - strand at 773.668 kb on + strand at 773.704 kb on - strand at 773.705 kb on + strand at 773.705 kb on + strand at 773.705 kb on + strand at 773.708 kb on - strand at 773.708 kb on - strand at 773.709 kb on + strand at 773.730 kb on - strand at 773.730 kb on - strand at 773.731 kb on + strand at 773.731 kb on + strand at 773.774 kb on + strand at 773.774 kb on + strand at 773.824 kb on - strand at 773.828 kb on + strand at 773.839 kb on - strand at 773.850 kb on - strand at 773.850 kb on - strand at 773.851 kb on + strand at 773.853 kb on - strand at 773.853 kb on - strand at 773.853 kb on - strand at 773.853 kb on - strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.854 kb on + strand at 773.856 kb on + strand at 773.857 kb on - strand at 773.857 kb on - strand at 773.857 kb on - strand at 773.857 kb on - strand at 773.858 kb on + strand at 773.858 kb on + strand at 773.871 kb on + strand at 773.891 kb on + strand at 773.923 kb on - strand at 773.924 kb on + strand at 773.924 kb on + strand at 773.924 kb on + strand at 773.963 kb on + strand at 773.986 kb on - strand at 773.987 kb on + strand at 773.987 kb on + strand at 773.987 kb on + strand at 773.991 kb on + strand at 774.040 kb on - strand at 774.113 kb on - strand at 774.191 kb on + strand, within MMJJ_RS04165 at 774.211 kb on - strand, within MMJJ_RS04165 at 774.257 kb on + strand, within MMJJ_RS04165 at 774.257 kb on + strand, within MMJJ_RS04165 at 774.263 kb on - strand, within MMJJ_RS04165 at 774.264 kb on + strand, within MMJJ_RS04165 at 774.278 kb on + strand, within MMJJ_RS04165 at 774.298 kb on - strand, within MMJJ_RS04165 at 774.298 kb on - strand, within MMJJ_RS04165 at 774.299 kb on + strand, within MMJJ_RS04165 at 774.299 kb on + strand, within MMJJ_RS04165 at 774.299 kb on + strand, within MMJJ_RS04165 at 774.299 kb on + strand, within MMJJ_RS04165 at 774.345 kb on - strand, within MMJJ_RS04165 at 774.345 kb on - strand, within MMJJ_RS04165 at 774.385 kb on - strand, within MMJJ_RS04165 at 774.424 kb on - strand, within MMJJ_RS04165 at 774.430 kb on + strand, within MMJJ_RS04165 at 774.449 kb on + strand, within MMJJ_RS04165 at 774.463 kb on - strand, within MMJJ_RS04165 at 774.464 kb on + strand, within MMJJ_RS04165 at 774.499 kb on - strand, within MMJJ_RS04165 at 774.511 kb on - strand, within MMJJ_RS04165 at 774.511 kb on - strand, within MMJJ_RS04165 at 774.511 kb on - strand, within MMJJ_RS04165 at 774.511 kb on - strand, within MMJJ_RS04165 at 774.512 kb on + strand, within MMJJ_RS04165 at 774.512 kb on + strand, within MMJJ_RS04165 at 774.577 kb on - strand, within MMJJ_RS04165 at 774.578 kb on + strand, within MMJJ_RS04165 at 774.589 kb on + strand, within MMJJ_RS04165 at 774.589 kb on + strand, within MMJJ_RS04165 at 774.590 kb on - strand, within MMJJ_RS04165 at 774.590 kb on - strand, within MMJJ_RS04165 at 774.591 kb on + strand, within MMJJ_RS04165 at 774.607 kb on + strand, within MMJJ_RS04165 at 774.613 kb on + strand, within MMJJ_RS04165 at 774.667 kb on - strand, within MMJJ_RS04165 at 774.681 kb on - strand, within MMJJ_RS04165 at 774.682 kb on + strand, within MMJJ_RS04165 at 774.685 kb on - strand, within MMJJ_RS04165 at 774.764 kb on + strand, within MMJJ_RS04165 at 774.788 kb on + strand, within MMJJ_RS04165 at 774.788 kb on + strand, within MMJJ_RS04165 at 774.874 kb on - strand, within MMJJ_RS04165 at 774.875 kb on + strand, within MMJJ_RS04165 at 774.933 kb on + strand, within MMJJ_RS04165 at 774.933 kb on + strand, within MMJJ_RS04165 at 774.968 kb on - strand, within MMJJ_RS04165 at 774.986 kb on + strand, within MMJJ_RS04165 at 775.021 kb on + strand, within MMJJ_RS04165 at 775.027 kb on + strand, within MMJJ_RS04165 at 775.095 kb on - strand, within MMJJ_RS04165 at 775.096 kb on + strand, within MMJJ_RS04165 at 775.116 kb on - strand, within MMJJ_RS04165 at 775.197 kb on - strand, within MMJJ_RS04165 at 775.204 kb on + strand, within MMJJ_RS04165 at 775.216 kb on - strand, within MMJJ_RS04165 at 775.270 kb on + strand, within MMJJ_RS04165 at 775.327 kb on - strand at 775.327 kb on - strand at 775.328 kb on + strand at 775.345 kb on - strand at 775.390 kb on - strand at 775.390 kb on - strand at 775.391 kb on + strand at 775.391 kb on + strand at 775.391 kb on + strand at 775.396 kb on - strand at 775.397 kb on + strand at 775.397 kb on + strand at 775.410 kb on - strand at 775.410 kb on - strand at 775.410 kb on - strand at 775.411 kb on + strand at 775.412 kb on - strand at 775.412 kb on - strand at 775.440 kb on - strand at 775.440 kb on - strand at 775.441 kb on + strand at 775.441 kb on + strand at 775.441 kb on + strand at 775.494 kb on - strand at 775.496 kb on - strand at 775.497 kb on + strand at 775.497 kb on + strand at 775.497 kb on + strand at 775.503 kb on - strand at 775.523 kb on - strand at 775.523 kb on - strand at 775.523 kb on - strand at 775.524 kb on + strand at 775.524 kb on + strand at 775.526 kb on + strand at 775.526 kb on + strand at 775.526 kb on + strand at 775.530 kb on + strand at 775.576 kb on + strand at 775.589 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Polymyxin B sulfate 0.05 mM remove 772,982 + MMJJ_RS04160 0.46 +0.5 772,988 - MMJJ_RS04160 0.47 +3.1 772,989 + MMJJ_RS04160 0.47 -1.5 773,014 + MMJJ_RS04160 0.49 -0.1 773,018 - MMJJ_RS04160 0.49 +2.0 773,051 - MMJJ_RS04160 0.51 -2.5 773,053 - MMJJ_RS04160 0.51 +1.2 773,054 + MMJJ_RS04160 0.51 -1.5 773,072 - MMJJ_RS04160 0.53 +1.5 773,105 - MMJJ_RS04160 0.55 +0.6 773,106 + MMJJ_RS04160 0.55 -2.3 773,106 + MMJJ_RS04160 0.55 -0.6 773,129 + MMJJ_RS04160 0.56 +0.3 773,164 - MMJJ_RS04160 0.59 -0.1 773,205 + MMJJ_RS04160 0.62 -2.1 773,248 - MMJJ_RS04160 0.64 -1.0 773,257 - MMJJ_RS04160 0.65 -1.6 773,262 + MMJJ_RS04160 0.65 +1.8 773,273 - MMJJ_RS04160 0.66 +1.4 773,274 + MMJJ_RS04160 0.66 +0.2 773,279 + MMJJ_RS04160 0.67 +0.1 773,291 + MMJJ_RS04160 0.67 +0.7 773,291 + MMJJ_RS04160 0.67 +1.1 773,293 + MMJJ_RS04160 0.67 -1.5 773,358 + MMJJ_RS04160 0.72 -1.2 773,447 + MMJJ_RS04160 0.78 -1.2 773,447 + MMJJ_RS04160 0.78 +1.4 773,449 - MMJJ_RS04160 0.78 +0.2 773,472 - MMJJ_RS04160 0.80 -1.9 773,479 - MMJJ_RS04160 0.80 +0.0 773,479 - MMJJ_RS04160 0.80 -2.6 773,479 - MMJJ_RS04160 0.80 +0.1 773,507 - MMJJ_RS04160 0.82 +0.3 773,512 + MMJJ_RS04160 0.82 -0.8 773,512 + MMJJ_RS04160 0.82 -0.4 773,512 + MMJJ_RS04160 0.82 -0.2 773,646 + +1.1 773,667 - -3.4 773,668 + +0.9 773,704 - -2.5 773,705 + -3.0 773,705 + +0.2 773,705 + -0.1 773,708 - -0.7 773,708 - -0.0 773,709 + +2.8 773,730 - +0.0 773,730 - -0.4 773,731 + +0.5 773,731 + +0.1 773,774 + +0.2 773,774 + -0.9 773,824 - -0.2 773,828 + -1.5 773,839 - +1.2 773,850 - +1.3 773,850 - -0.5 773,851 + -0.8 773,853 - +0.5 773,853 - +0.2 773,853 - -1.2 773,853 - -3.5 773,854 + -1.4 773,854 + -0.3 773,854 + -0.6 773,854 + -1.8 773,854 + +1.0 773,854 + +1.3 773,854 + +1.6 773,854 + -0.6 773,854 + +0.4 773,854 + -0.8 773,854 + -1.3 773,854 + +0.6 773,854 + -3.3 773,854 + -3.4 773,856 + +1.9 773,857 - +1.6 773,857 - -0.8 773,857 - -0.8 773,857 - -1.6 773,858 + +0.6 773,858 + +0.8 773,871 + -3.8 773,891 + -0.6 773,923 - -0.8 773,924 + +0.6 773,924 + -0.1 773,924 + -2.0 773,963 + +1.0 773,986 - -0.4 773,987 + +0.3 773,987 + +1.4 773,987 + -0.2 773,991 + +2.4 774,040 - +0.5 774,113 - +0.1 774,191 + MMJJ_RS04165 0.15 -2.2 774,211 - MMJJ_RS04165 0.16 -0.8 774,257 + MMJJ_RS04165 0.19 +1.0 774,257 + MMJJ_RS04165 0.19 -1.3 774,263 - MMJJ_RS04165 0.20 +2.6 774,264 + MMJJ_RS04165 0.20 -0.5 774,278 + MMJJ_RS04165 0.21 +0.3 774,298 - MMJJ_RS04165 0.22 -0.4 774,298 - MMJJ_RS04165 0.22 -0.5 774,299 + MMJJ_RS04165 0.22 +0.5 774,299 + MMJJ_RS04165 0.22 +1.2 774,299 + MMJJ_RS04165 0.22 -2.2 774,299 + MMJJ_RS04165 0.22 +1.8 774,345 - MMJJ_RS04165 0.25 -1.0 774,345 - MMJJ_RS04165 0.25 +0.8 774,385 - MMJJ_RS04165 0.28 -1.3 774,424 - MMJJ_RS04165 0.31 -0.3 774,430 + MMJJ_RS04165 0.31 +0.3 774,449 + MMJJ_RS04165 0.33 -2.0 774,463 - MMJJ_RS04165 0.33 -0.1 774,464 + MMJJ_RS04165 0.34 +0.2 774,499 - MMJJ_RS04165 0.36 -3.0 774,511 - MMJJ_RS04165 0.37 +0.5 774,511 - MMJJ_RS04165 0.37 -0.7 774,511 - MMJJ_RS04165 0.37 +0.4 774,511 - MMJJ_RS04165 0.37 +1.2 774,512 + MMJJ_RS04165 0.37 -2.9 774,512 + MMJJ_RS04165 0.37 +0.3 774,577 - MMJJ_RS04165 0.41 -0.9 774,578 + MMJJ_RS04165 0.41 +1.0 774,589 + MMJJ_RS04165 0.42 -1.4 774,589 + MMJJ_RS04165 0.42 -0.0 774,590 - MMJJ_RS04165 0.42 +0.2 774,590 - MMJJ_RS04165 0.42 +1.2 774,591 + MMJJ_RS04165 0.42 -1.3 774,607 + MMJJ_RS04165 0.43 -0.8 774,613 + MMJJ_RS04165 0.44 +0.3 774,667 - MMJJ_RS04165 0.47 +3.1 774,681 - MMJJ_RS04165 0.48 -1.1 774,682 + MMJJ_RS04165 0.48 +0.3 774,685 - MMJJ_RS04165 0.49 -2.1 774,764 + MMJJ_RS04165 0.54 -1.3 774,788 + MMJJ_RS04165 0.56 -0.2 774,788 + MMJJ_RS04165 0.56 -3.2 774,874 - MMJJ_RS04165 0.61 +2.7 774,875 + MMJJ_RS04165 0.61 -1.5 774,933 + MMJJ_RS04165 0.65 -0.7 774,933 + MMJJ_RS04165 0.65 +0.8 774,968 - MMJJ_RS04165 0.68 +0.2 774,986 + MMJJ_RS04165 0.69 -1.0 775,021 + MMJJ_RS04165 0.71 +0.5 775,027 + MMJJ_RS04165 0.72 -1.1 775,095 - MMJJ_RS04165 0.76 +2.0 775,096 + MMJJ_RS04165 0.77 +2.4 775,116 - MMJJ_RS04165 0.78 -3.7 775,197 - MMJJ_RS04165 0.83 -0.3 775,204 + MMJJ_RS04165 0.84 -0.4 775,216 - MMJJ_RS04165 0.85 -0.4 775,270 + MMJJ_RS04165 0.88 +3.3 775,327 - +0.1 775,327 - +2.7 775,328 + +0.7 775,345 - -0.1 775,390 - +2.1 775,390 - -1.3 775,391 + +1.4 775,391 + -0.3 775,391 + +1.3 775,396 - -2.8 775,397 + +2.0 775,397 + +0.1 775,410 - +0.6 775,410 - +0.1 775,410 - +0.2 775,411 + +0.7 775,412 - +0.3 775,412 - -0.7 775,440 - -0.2 775,440 - -0.2 775,441 + -1.3 775,441 + -2.6 775,441 + +0.6 775,494 - +4.5 775,496 - +2.2 775,497 + +1.2 775,497 + +2.2 775,497 + -2.6 775,503 - +0.2 775,523 - -2.8 775,523 - +5.0 775,523 - +1.6 775,524 + -0.0 775,524 + -2.1 775,526 + +1.7 775,526 + -0.1 775,526 + -1.7 775,530 + +2.2 775,576 + +0.9 775,589 + -0.7
Or see this region's nucleotide sequence