Experiment: McCas_formate_complete Sulfaquinoxaline 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03535 and MMJJ_RS03540 are separated by 51 nucleotides MMJJ_RS03540 and MMJJ_RS03545 are separated by 0 nucleotides MMJJ_RS03545 and MMJJ_RS03550 are separated by 110 nucleotides MMJJ_RS03550 and MMJJ_RS03555 are separated by 105 nucleotides
MMJJ_RS03535: MMJJ_RS03535 - hypothetical protein, at 662,095 to 662,973
_RS03535
MMJJ_RS03540: MMJJ_RS03540 - TIGR00289 family protein, at 663,025 to 663,696
_RS03540
MMJJ_RS03545: MMJJ_RS03545 - flagella protein F, at 663,697 to 664,131
_RS03545
MMJJ_RS03550: MMJJ_RS03550 - tRNA-Val, at 664,242 to 664,318
_RS03550
MMJJ_RS03555: MMJJ_RS03555 - acetyl-CoA carboxylase biotin carboxylase subunit, at 664,424 to 665,929
_RS03555
Position (kb) 663
664 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 662.025 kb on - strand at 662.061 kb on + strand at 662.065 kb on - strand at 662.090 kb on + strand at 662.090 kb on + strand at 662.091 kb on - strand at 662.092 kb on + strand at 662.092 kb on + strand at 662.092 kb on + strand at 662.095 kb on + strand at 662.100 kb on - strand at 662.132 kb on - strand at 662.132 kb on - strand at 662.132 kb on - strand at 662.147 kb on - strand at 662.169 kb on - strand at 662.236 kb on - strand, within MMJJ_RS03535 at 662.236 kb on - strand, within MMJJ_RS03535 at 662.237 kb on + strand, within MMJJ_RS03535 at 662.238 kb on - strand, within MMJJ_RS03535 at 662.239 kb on + strand, within MMJJ_RS03535 at 662.239 kb on + strand, within MMJJ_RS03535 at 662.244 kb on - strand, within MMJJ_RS03535 at 662.244 kb on - strand, within MMJJ_RS03535 at 662.252 kb on + strand, within MMJJ_RS03535 at 662.318 kb on - strand, within MMJJ_RS03535 at 662.319 kb on + strand, within MMJJ_RS03535 at 662.319 kb on + strand, within MMJJ_RS03535 at 662.319 kb on + strand, within MMJJ_RS03535 at 662.323 kb on + strand, within MMJJ_RS03535 at 662.348 kb on - strand, within MMJJ_RS03535 at 662.348 kb on - strand, within MMJJ_RS03535 at 662.348 kb on - strand, within MMJJ_RS03535 at 662.348 kb on - strand, within MMJJ_RS03535 at 662.349 kb on + strand, within MMJJ_RS03535 at 662.349 kb on + strand, within MMJJ_RS03535 at 662.350 kb on - strand, within MMJJ_RS03535 at 662.350 kb on - strand, within MMJJ_RS03535 at 662.350 kb on - strand, within MMJJ_RS03535 at 662.350 kb on - strand, within MMJJ_RS03535 at 662.351 kb on + strand, within MMJJ_RS03535 at 662.351 kb on + strand, within MMJJ_RS03535 at 662.351 kb on + strand, within MMJJ_RS03535 at 662.359 kb on - strand, within MMJJ_RS03535 at 662.387 kb on + strand, within MMJJ_RS03535 at 662.428 kb on + strand, within MMJJ_RS03535 at 662.434 kb on + strand, within MMJJ_RS03535 at 662.551 kb on - strand, within MMJJ_RS03535 at 662.678 kb on - strand, within MMJJ_RS03535 at 662.711 kb on - strand, within MMJJ_RS03535 at 662.734 kb on - strand, within MMJJ_RS03535 at 662.769 kb on - strand, within MMJJ_RS03535 at 662.803 kb on + strand, within MMJJ_RS03535 at 662.855 kb on - strand, within MMJJ_RS03535 at 662.871 kb on + strand, within MMJJ_RS03535 at 662.893 kb on + strand at 662.909 kb on - strand at 662.909 kb on - strand at 662.910 kb on + strand at 662.911 kb on - strand at 662.911 kb on - strand at 662.931 kb on - strand at 662.934 kb on - strand at 662.952 kb on + strand at 662.972 kb on + strand at 662.976 kb on + strand at 662.979 kb on - strand at 662.979 kb on - strand at 663.043 kb on - strand at 663.109 kb on - strand, within MMJJ_RS03540 at 663.146 kb on + strand, within MMJJ_RS03540 at 663.146 kb on + strand, within MMJJ_RS03540 at 663.218 kb on - strand, within MMJJ_RS03540 at 663.320 kb on + strand, within MMJJ_RS03540 at 663.415 kb on + strand, within MMJJ_RS03540 at 663.518 kb on - strand, within MMJJ_RS03540 at 663.543 kb on - strand, within MMJJ_RS03540 at 663.582 kb on + strand, within MMJJ_RS03540 at 663.658 kb on - strand at 663.659 kb on + strand at 663.659 kb on + strand at 663.664 kb on + strand at 663.664 kb on + strand at 663.666 kb on + strand at 663.666 kb on + strand at 663.666 kb on + strand at 663.698 kb on - strand at 663.699 kb on + strand at 663.699 kb on + strand at 663.748 kb on - strand, within MMJJ_RS03545 at 663.748 kb on - strand, within MMJJ_RS03545 at 663.749 kb on + strand, within MMJJ_RS03545 at 663.749 kb on + strand, within MMJJ_RS03545 at 663.759 kb on - strand, within MMJJ_RS03545 at 663.782 kb on - strand, within MMJJ_RS03545 at 663.796 kb on + strand, within MMJJ_RS03545 at 663.797 kb on - strand, within MMJJ_RS03545 at 663.797 kb on - strand, within MMJJ_RS03545 at 663.798 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.828 kb on + strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.904 kb on + strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.920 kb on + strand, within MMJJ_RS03545 at 663.925 kb on - strand, within MMJJ_RS03545 at 663.925 kb on - strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.927 kb on - strand, within MMJJ_RS03545 at 663.928 kb on + strand, within MMJJ_RS03545 at 664.004 kb on - strand, within MMJJ_RS03545 at 664.004 kb on - strand, within MMJJ_RS03545 at 664.027 kb on - strand, within MMJJ_RS03545 at 664.027 kb on - strand, within MMJJ_RS03545 at 664.066 kb on - strand, within MMJJ_RS03545 at 664.112 kb on - strand at 664.113 kb on + strand at 664.147 kb on + strand at 664.155 kb on - strand at 664.155 kb on - strand at 664.180 kb on - strand at 664.180 kb on - strand at 664.180 kb on - strand at 664.181 kb on + strand at 664.184 kb on - strand at 664.339 kb on - strand at 664.345 kb on + strand at 664.349 kb on + strand at 664.368 kb on - strand at 664.394 kb on + strand at 664.394 kb on + strand at 664.407 kb on - strand at 664.411 kb on - strand at 664.412 kb on + strand at 664.437 kb on - strand at 664.437 kb on - strand at 664.469 kb on - strand at 664.469 kb on - strand at 664.469 kb on - strand at 664.470 kb on + strand at 664.482 kb on + strand at 664.689 kb on + strand, within MMJJ_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Sulfaquinoxaline 0.1 mM remove 662,025 - -3.1 662,061 + -2.8 662,065 - +2.3 662,090 + +0.4 662,090 + +3.1 662,091 - -0.5 662,092 + -2.8 662,092 + -3.9 662,092 + +0.3 662,095 + -4.7 662,100 - -1.7 662,132 - +1.2 662,132 - +1.4 662,132 - +1.2 662,147 - +0.7 662,169 - +0.1 662,236 - MMJJ_RS03535 0.16 -4.4 662,236 - MMJJ_RS03535 0.16 +0.1 662,237 + MMJJ_RS03535 0.16 -2.1 662,238 - MMJJ_RS03535 0.16 -0.1 662,239 + MMJJ_RS03535 0.16 -0.7 662,239 + MMJJ_RS03535 0.16 +0.6 662,244 - MMJJ_RS03535 0.17 +1.1 662,244 - MMJJ_RS03535 0.17 -0.4 662,252 + MMJJ_RS03535 0.18 +2.9 662,318 - MMJJ_RS03535 0.25 -2.0 662,319 + MMJJ_RS03535 0.25 -2.8 662,319 + MMJJ_RS03535 0.25 +1.1 662,319 + MMJJ_RS03535 0.25 -0.4 662,323 + MMJJ_RS03535 0.26 -0.6 662,348 - MMJJ_RS03535 0.29 -2.3 662,348 - MMJJ_RS03535 0.29 -1.7 662,348 - MMJJ_RS03535 0.29 -3.9 662,348 - MMJJ_RS03535 0.29 -0.8 662,349 + MMJJ_RS03535 0.29 +0.9 662,349 + MMJJ_RS03535 0.29 +0.6 662,350 - MMJJ_RS03535 0.29 +1.0 662,350 - MMJJ_RS03535 0.29 -3.0 662,350 - MMJJ_RS03535 0.29 -0.2 662,350 - MMJJ_RS03535 0.29 -0.7 662,351 + MMJJ_RS03535 0.29 -0.6 662,351 + MMJJ_RS03535 0.29 -3.4 662,351 + MMJJ_RS03535 0.29 -1.0 662,359 - MMJJ_RS03535 0.30 -3.3 662,387 + MMJJ_RS03535 0.33 +0.7 662,428 + MMJJ_RS03535 0.38 +1.0 662,434 + MMJJ_RS03535 0.39 +0.1 662,551 - MMJJ_RS03535 0.52 -5.7 662,678 - MMJJ_RS03535 0.66 -2.1 662,711 - MMJJ_RS03535 0.70 +1.2 662,734 - MMJJ_RS03535 0.73 +1.3 662,769 - MMJJ_RS03535 0.77 +2.4 662,803 + MMJJ_RS03535 0.81 +1.4 662,855 - MMJJ_RS03535 0.86 -0.7 662,871 + MMJJ_RS03535 0.88 -0.7 662,893 + -2.6 662,909 - +0.8 662,909 - +0.6 662,910 + -1.3 662,911 - +1.5 662,911 - +2.3 662,931 - +1.5 662,934 - +1.8 662,952 + +0.4 662,972 + -0.7 662,976 + +1.4 662,979 - +0.0 662,979 - +0.9 663,043 - -1.7 663,109 - MMJJ_RS03540 0.12 -0.7 663,146 + MMJJ_RS03540 0.18 +1.1 663,146 + MMJJ_RS03540 0.18 -3.9 663,218 - MMJJ_RS03540 0.29 -0.2 663,320 + MMJJ_RS03540 0.44 -0.6 663,415 + MMJJ_RS03540 0.58 -4.0 663,518 - MMJJ_RS03540 0.73 -0.9 663,543 - MMJJ_RS03540 0.77 -3.0 663,582 + MMJJ_RS03540 0.83 -3.2 663,658 - +0.5 663,659 + +0.2 663,659 + -3.5 663,664 + -0.0 663,664 + +0.8 663,666 + +0.7 663,666 + -1.6 663,666 + +0.4 663,698 - +0.7 663,699 + +0.0 663,699 + -0.5 663,748 - MMJJ_RS03545 0.12 +0.2 663,748 - MMJJ_RS03545 0.12 -0.6 663,749 + MMJJ_RS03545 0.12 +0.6 663,749 + MMJJ_RS03545 0.12 -3.9 663,759 - MMJJ_RS03545 0.14 +1.3 663,782 - MMJJ_RS03545 0.20 +0.4 663,796 + MMJJ_RS03545 0.23 -1.1 663,797 - MMJJ_RS03545 0.23 -0.2 663,797 - MMJJ_RS03545 0.23 -1.8 663,798 + MMJJ_RS03545 0.23 +1.0 663,800 + MMJJ_RS03545 0.24 +0.3 663,800 + MMJJ_RS03545 0.24 +1.2 663,800 + MMJJ_RS03545 0.24 +1.2 663,800 + MMJJ_RS03545 0.24 +0.2 663,828 + MMJJ_RS03545 0.30 +1.1 663,903 - MMJJ_RS03545 0.47 -2.8 663,903 - MMJJ_RS03545 0.47 +1.5 663,903 - MMJJ_RS03545 0.47 -1.2 663,903 - MMJJ_RS03545 0.47 -0.0 663,904 + MMJJ_RS03545 0.48 +0.5 663,916 - MMJJ_RS03545 0.50 +2.5 663,916 - MMJJ_RS03545 0.50 +2.3 663,916 - MMJJ_RS03545 0.50 +0.6 663,917 + MMJJ_RS03545 0.51 +0.3 663,917 + MMJJ_RS03545 0.51 +0.8 663,917 + MMJJ_RS03545 0.51 +1.8 663,920 + MMJJ_RS03545 0.51 +1.8 663,925 - MMJJ_RS03545 0.52 -0.2 663,925 - MMJJ_RS03545 0.52 +3.2 663,926 + MMJJ_RS03545 0.53 +1.3 663,926 + MMJJ_RS03545 0.53 +0.0 663,926 + MMJJ_RS03545 0.53 +0.9 663,926 + MMJJ_RS03545 0.53 +2.3 663,926 + MMJJ_RS03545 0.53 +0.2 663,927 - MMJJ_RS03545 0.53 -4.3 663,928 + MMJJ_RS03545 0.53 -0.2 664,004 - MMJJ_RS03545 0.71 +0.6 664,004 - MMJJ_RS03545 0.71 +1.3 664,027 - MMJJ_RS03545 0.76 +3.6 664,027 - MMJJ_RS03545 0.76 -0.2 664,066 - MMJJ_RS03545 0.85 +1.0 664,112 - +2.0 664,113 + -1.7 664,147 + -0.7 664,155 - +1.0 664,155 - -0.9 664,180 - +1.7 664,180 - -1.1 664,180 - +0.4 664,181 + -2.7 664,184 - -0.1 664,339 - +0.7 664,345 + -0.1 664,349 + -1.1 664,368 - -2.3 664,394 + -3.2 664,394 + +0.0 664,407 - +1.1 664,411 - +0.6 664,412 + -3.7 664,437 - -1.9 664,437 - -0.2 664,469 - -3.9 664,469 - -0.2 664,469 - -1.6 664,470 + +0.7 664,482 + -1.1 664,689 + MMJJ_RS03555 0.18 -0.3
Or see this region's nucleotide sequence