Experiment: McCas_formate_complete Sulfaquinoxaline 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00155 and MMJJ_RS00160 are separated by 340 nucleotides MMJJ_RS00160 and MMJJ_RS00165 are separated by 85 nucleotides
MMJJ_RS00155: MMJJ_RS00155 - DUF2193 domain-containing protein, at 27,685 to 29,184
_RS00155
MMJJ_RS00160: MMJJ_RS00160 - hypothetical protein, at 29,525 to 30,532
_RS00160
MMJJ_RS00165: MMJJ_RS00165 - F420-dependent thioredoxin reductase, at 30,618 to 31,520
_RS00165
Position (kb) 29
30
31 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 28.545 kb on + strand, within MMJJ_RS00155 at 28.575 kb on - strand, within MMJJ_RS00155 at 28.637 kb on - strand, within MMJJ_RS00155 at 28.703 kb on + strand, within MMJJ_RS00155 at 28.816 kb on - strand, within MMJJ_RS00155 at 28.816 kb on - strand, within MMJJ_RS00155 at 28.817 kb on + strand, within MMJJ_RS00155 at 28.889 kb on - strand, within MMJJ_RS00155 at 28.890 kb on + strand, within MMJJ_RS00155 at 28.894 kb on - strand, within MMJJ_RS00155 at 28.894 kb on - strand, within MMJJ_RS00155 at 28.895 kb on + strand, within MMJJ_RS00155 at 28.952 kb on + strand, within MMJJ_RS00155 at 28.952 kb on + strand, within MMJJ_RS00155 at 28.962 kb on - strand, within MMJJ_RS00155 at 28.962 kb on - strand, within MMJJ_RS00155 at 29.005 kb on + strand, within MMJJ_RS00155 at 29.065 kb on - strand at 29.065 kb on - strand at 29.066 kb on + strand at 29.066 kb on + strand at 29.126 kb on + strand at 29.213 kb on + strand at 29.265 kb on + strand at 29.268 kb on - strand at 29.272 kb on + strand at 29.277 kb on - strand at 29.278 kb on + strand at 29.280 kb on + strand at 29.280 kb on + strand at 29.280 kb on + strand at 29.285 kb on - strand at 29.286 kb on + strand at 29.293 kb on - strand at 29.293 kb on - strand at 29.293 kb on - strand at 29.293 kb on - strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.296 kb on - strand at 29.296 kb on - strand at 29.296 kb on - strand at 29.296 kb on - strand at 29.296 kb on - strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.298 kb on - strand at 29.298 kb on - strand at 29.298 kb on - strand at 29.298 kb on - strand at 29.299 kb on + strand at 29.301 kb on - strand at 29.301 kb on - strand at 29.301 kb on - strand at 29.301 kb on - strand at 29.302 kb on + strand at 29.302 kb on + strand at 29.302 kb on + strand at 29.303 kb on - strand at 29.304 kb on + strand at 29.304 kb on + strand at 29.304 kb on + strand at 29.304 kb on + strand at 29.318 kb on - strand at 29.350 kb on + strand at 29.405 kb on + strand at 29.406 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.409 kb on + strand at 29.409 kb on + strand at 29.410 kb on - strand at 29.410 kb on - strand at 29.410 kb on - strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.413 kb on - strand at 29.413 kb on - strand at 29.414 kb on + strand at 29.466 kb on - strand at 29.511 kb on + strand at 29.521 kb on - strand at 29.522 kb on + strand at 29.549 kb on + strand at 29.556 kb on - strand at 29.557 kb on + strand at 29.558 kb on - strand at 29.559 kb on + strand at 29.563 kb on - strand at 29.564 kb on + strand at 29.569 kb on - strand at 29.569 kb on - strand at 29.569 kb on - strand at 29.569 kb on - strand at 29.569 kb on - strand at 29.570 kb on + strand at 29.570 kb on + strand at 29.570 kb on + strand at 29.574 kb on + strand at 29.583 kb on + strand at 29.593 kb on - strand at 29.607 kb on + strand at 29.623 kb on - strand at 29.673 kb on - strand, within MMJJ_RS00160 at 29.696 kb on + strand, within MMJJ_RS00160 at 29.702 kb on + strand, within MMJJ_RS00160 at 29.702 kb on + strand, within MMJJ_RS00160 at 29.718 kb on - strand, within MMJJ_RS00160 at 29.718 kb on - strand, within MMJJ_RS00160 at 29.742 kb on - strand, within MMJJ_RS00160 at 29.747 kb on - strand, within MMJJ_RS00160 at 29.748 kb on + strand, within MMJJ_RS00160 at 29.748 kb on + strand, within MMJJ_RS00160 at 29.748 kb on + strand, within MMJJ_RS00160 at 29.749 kb on - strand, within MMJJ_RS00160 at 29.750 kb on + strand, within MMJJ_RS00160 at 29.755 kb on - strand, within MMJJ_RS00160 at 29.755 kb on - strand, within MMJJ_RS00160 at 29.773 kb on + strand, within MMJJ_RS00160 at 29.808 kb on + strand, within MMJJ_RS00160 at 29.851 kb on - strand, within MMJJ_RS00160 at 29.855 kb on + strand, within MMJJ_RS00160 at 29.873 kb on - strand, within MMJJ_RS00160 at 29.883 kb on - strand, within MMJJ_RS00160 at 29.883 kb on - strand, within MMJJ_RS00160 at 29.893 kb on - strand, within MMJJ_RS00160 at 29.904 kb on - strand, within MMJJ_RS00160 at 29.955 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.996 kb on - strand, within MMJJ_RS00160 at 29.996 kb on - strand, within MMJJ_RS00160 at 29.997 kb on + strand, within MMJJ_RS00160 at 29.997 kb on + strand, within MMJJ_RS00160 at 29.997 kb on + strand, within MMJJ_RS00160 at 29.997 kb on + strand, within MMJJ_RS00160 at 30.003 kb on - strand, within MMJJ_RS00160 at 30.003 kb on - strand, within MMJJ_RS00160 at 30.056 kb on + strand, within MMJJ_RS00160 at 30.069 kb on - strand, within MMJJ_RS00160 at 30.069 kb on - strand, within MMJJ_RS00160 at 30.070 kb on + strand, within MMJJ_RS00160 at 30.107 kb on + strand, within MMJJ_RS00160 at 30.130 kb on - strand, within MMJJ_RS00160 at 30.131 kb on + strand, within MMJJ_RS00160 at 30.172 kb on + strand, within MMJJ_RS00160 at 30.193 kb on + strand, within MMJJ_RS00160 at 30.211 kb on - strand, within MMJJ_RS00160 at 30.325 kb on - strand, within MMJJ_RS00160 at 30.329 kb on - strand, within MMJJ_RS00160 at 30.333 kb on - strand, within MMJJ_RS00160 at 30.395 kb on - strand, within MMJJ_RS00160 at 30.410 kb on - strand, within MMJJ_RS00160 at 30.410 kb on - strand, within MMJJ_RS00160 at 30.411 kb on + strand, within MMJJ_RS00160 at 30.411 kb on + strand, within MMJJ_RS00160 at 30.415 kb on - strand, within MMJJ_RS00160 at 30.459 kb on - strand at 30.459 kb on - strand at 30.523 kb on - strand at 30.531 kb on + strand at 30.549 kb on - strand at 30.554 kb on + strand at 30.554 kb on + strand at 30.554 kb on + strand at 30.561 kb on - strand at 30.566 kb on - strand at 30.566 kb on - strand at 30.566 kb on - strand at 30.571 kb on - strand at 30.571 kb on - strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.574 kb on + strand at 30.592 kb on - strand at 30.622 kb on - strand at 30.623 kb on + strand at 30.623 kb on + strand at 30.624 kb on - strand at 30.636 kb on + strand at 30.638 kb on - strand at 30.869 kb on - strand, within MMJJ_RS00165 at 30.870 kb on + strand, within MMJJ_RS00165 at 30.870 kb on + strand, within MMJJ_RS00165 at 30.870 kb on + strand, within MMJJ_RS00165 at 30.885 kb on - strand, within MMJJ_RS00165 at 30.887 kb on - strand, within MMJJ_RS00165 at 30.912 kb on - strand, within MMJJ_RS00165 at 30.913 kb on + strand, within MMJJ_RS00165 at 30.932 kb on + strand, within MMJJ_RS00165 at 30.947 kb on - strand, within MMJJ_RS00165 at 30.947 kb on - strand, within MMJJ_RS00165 at 30.948 kb on + strand, within MMJJ_RS00165 at 30.948 kb on + strand, within MMJJ_RS00165 at 30.951 kb on - strand, within MMJJ_RS00165 at 30.967 kb on - strand, within MMJJ_RS00165 at 30.968 kb on + strand, within MMJJ_RS00165 at 31.002 kb on - strand, within MMJJ_RS00165 at 31.003 kb on + strand, within MMJJ_RS00165 at 31.003 kb on + strand, within MMJJ_RS00165 at 31.064 kb on - strand, within MMJJ_RS00165 at 31.086 kb on - strand, within MMJJ_RS00165 at 31.086 kb on - strand, within MMJJ_RS00165 at 31.086 kb on - strand, within MMJJ_RS00165 at 31.086 kb on - strand, within MMJJ_RS00165 at 31.088 kb on - strand, within MMJJ_RS00165 at 31.088 kb on - strand, within MMJJ_RS00165 at 31.088 kb on - strand, within MMJJ_RS00165 at 31.089 kb on + strand, within MMJJ_RS00165 at 31.093 kb on - strand, within MMJJ_RS00165 at 31.094 kb on + strand, within MMJJ_RS00165 at 31.100 kb on - strand, within MMJJ_RS00165 at 31.114 kb on - strand at 31.120 kb on - strand, within MMJJ_RS00165 at 31.125 kb on + strand, within MMJJ_RS00165 at 31.142 kb on + strand, within MMJJ_RS00165 at 31.180 kb on - strand, within MMJJ_RS00165 at 31.198 kb on - strand, within MMJJ_RS00165 at 31.198 kb on - strand, within MMJJ_RS00165 at 31.253 kb on - strand, within MMJJ_RS00165 at 31.284 kb on + strand, within MMJJ_RS00165 at 31.300 kb on - strand, within MMJJ_RS00165 at 31.304 kb on - strand, within MMJJ_RS00165 at 31.306 kb on - strand, within MMJJ_RS00165 at 31.404 kb on + strand, within MMJJ_RS00165 at 31.481 kb on - strand at 31.481 kb on - strand at 31.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Sulfaquinoxaline 0.1 mM remove 28,545 + MMJJ_RS00155 0.57 -3.3 28,575 - MMJJ_RS00155 0.59 +1.4 28,637 - MMJJ_RS00155 0.63 +1.4 28,703 + MMJJ_RS00155 0.68 +0.7 28,816 - MMJJ_RS00155 0.75 -3.1 28,816 - MMJJ_RS00155 0.75 -1.1 28,817 + MMJJ_RS00155 0.75 +0.8 28,889 - MMJJ_RS00155 0.80 -0.0 28,890 + MMJJ_RS00155 0.80 +0.9 28,894 - MMJJ_RS00155 0.81 +0.9 28,894 - MMJJ_RS00155 0.81 +0.5 28,895 + MMJJ_RS00155 0.81 +0.1 28,952 + MMJJ_RS00155 0.84 -0.4 28,952 + MMJJ_RS00155 0.84 -1.0 28,962 - MMJJ_RS00155 0.85 +1.0 28,962 - MMJJ_RS00155 0.85 -0.4 29,005 + MMJJ_RS00155 0.88 -2.4 29,065 - -0.4 29,065 - -3.2 29,066 + +0.1 29,066 + -2.2 29,126 + +0.6 29,213 + -1.0 29,265 + -3.9 29,268 - +0.4 29,272 + -2.7 29,277 - +1.0 29,278 + -0.9 29,280 + +1.5 29,280 + -1.3 29,280 + +0.2 29,285 - -0.2 29,286 + -2.4 29,293 - -1.1 29,293 - -0.8 29,293 - -0.4 29,293 - +1.7 29,294 + -4.5 29,294 + +1.3 29,294 + +2.0 29,294 + -0.2 29,294 + +0.4 29,294 + -1.6 29,294 + -2.6 29,294 + -0.8 29,294 + -3.9 29,296 - -0.2 29,296 - +0.4 29,296 - +0.7 29,296 - -0.2 29,296 - -1.4 29,297 + -0.3 29,297 + -1.9 29,297 + +0.1 29,297 + +1.4 29,297 + -4.0 29,297 + -1.3 29,297 + +1.2 29,297 + -2.8 29,298 - -2.1 29,298 - +1.2 29,298 - -0.6 29,298 - +1.2 29,299 + -3.9 29,301 - +1.0 29,301 - -1.6 29,301 - -1.3 29,301 - +0.5 29,302 + +0.8 29,302 + -3.1 29,302 + -2.0 29,303 - -0.4 29,304 + +2.1 29,304 + +0.6 29,304 + -2.2 29,304 + +3.1 29,318 - -0.2 29,350 + +0.7 29,405 + +0.6 29,406 - +2.5 29,408 - -2.2 29,408 - -3.6 29,408 - +0.3 29,408 - +0.7 29,408 - -1.0 29,408 - +2.1 29,409 + +0.3 29,409 + +0.9 29,410 - +2.0 29,410 - +2.9 29,410 - -4.6 29,411 + -0.6 29,411 + +0.8 29,411 + -0.3 29,411 + -1.9 29,413 - -4.2 29,413 - +0.1 29,414 + +1.3 29,466 - -0.6 29,511 + -2.8 29,521 - +1.4 29,522 + -3.8 29,549 + -0.4 29,556 - -0.9 29,557 + -1.1 29,558 - -5.2 29,559 + -0.5 29,563 - +0.1 29,564 + +0.7 29,569 - +0.6 29,569 - -0.2 29,569 - +0.9 29,569 - -0.3 29,569 - -0.6 29,570 + +0.4 29,570 + -4.5 29,570 + +1.8 29,574 + -0.2 29,583 + +1.5 29,593 - +0.4 29,607 + +0.7 29,623 - -0.0 29,673 - MMJJ_RS00160 0.15 -1.2 29,696 + MMJJ_RS00160 0.17 +1.7 29,702 + MMJJ_RS00160 0.18 -0.5 29,702 + MMJJ_RS00160 0.18 +1.9 29,718 - MMJJ_RS00160 0.19 +0.7 29,718 - MMJJ_RS00160 0.19 +0.9 29,742 - MMJJ_RS00160 0.22 -3.3 29,747 - MMJJ_RS00160 0.22 +3.2 29,748 + MMJJ_RS00160 0.22 -3.5 29,748 + MMJJ_RS00160 0.22 +1.3 29,748 + MMJJ_RS00160 0.22 -1.0 29,749 - MMJJ_RS00160 0.22 +1.1 29,750 + MMJJ_RS00160 0.22 +1.4 29,755 - MMJJ_RS00160 0.23 -0.3 29,755 - MMJJ_RS00160 0.23 -0.1 29,773 + MMJJ_RS00160 0.25 -0.5 29,808 + MMJJ_RS00160 0.28 -0.5 29,851 - MMJJ_RS00160 0.32 -2.4 29,855 + MMJJ_RS00160 0.33 +1.0 29,873 - MMJJ_RS00160 0.35 -1.2 29,883 - MMJJ_RS00160 0.36 -0.5 29,883 - MMJJ_RS00160 0.36 -3.5 29,893 - MMJJ_RS00160 0.37 -0.9 29,904 - MMJJ_RS00160 0.38 +0.7 29,955 - MMJJ_RS00160 0.43 -1.6 29,989 - MMJJ_RS00160 0.46 -0.8 29,989 - MMJJ_RS00160 0.46 -1.4 29,989 - MMJJ_RS00160 0.46 +1.0 29,989 - MMJJ_RS00160 0.46 +0.4 29,989 - MMJJ_RS00160 0.46 +1.0 29,991 - MMJJ_RS00160 0.46 +0.1 29,991 - MMJJ_RS00160 0.46 +3.0 29,991 - MMJJ_RS00160 0.46 -4.3 29,991 - MMJJ_RS00160 0.46 -0.4 29,991 - MMJJ_RS00160 0.46 +0.2 29,992 + MMJJ_RS00160 0.46 +0.7 29,992 + MMJJ_RS00160 0.46 +0.5 29,992 + MMJJ_RS00160 0.46 -0.2 29,992 + MMJJ_RS00160 0.46 +0.4 29,992 + MMJJ_RS00160 0.46 +2.4 29,992 + MMJJ_RS00160 0.46 -0.3 29,996 - MMJJ_RS00160 0.47 -0.7 29,996 - MMJJ_RS00160 0.47 +0.5 29,997 + MMJJ_RS00160 0.47 +0.6 29,997 + MMJJ_RS00160 0.47 -1.4 29,997 + MMJJ_RS00160 0.47 -0.2 29,997 + MMJJ_RS00160 0.47 -0.9 30,003 - MMJJ_RS00160 0.47 +0.4 30,003 - MMJJ_RS00160 0.47 -0.4 30,056 + MMJJ_RS00160 0.53 +0.8 30,069 - MMJJ_RS00160 0.54 -2.4 30,069 - MMJJ_RS00160 0.54 +0.2 30,070 + MMJJ_RS00160 0.54 -0.9 30,107 + MMJJ_RS00160 0.58 +2.8 30,130 - MMJJ_RS00160 0.60 +2.0 30,131 + MMJJ_RS00160 0.60 -0.1 30,172 + MMJJ_RS00160 0.64 +1.5 30,193 + MMJJ_RS00160 0.66 +3.3 30,211 - MMJJ_RS00160 0.68 -1.2 30,325 - MMJJ_RS00160 0.79 -1.8 30,329 - MMJJ_RS00160 0.80 +0.7 30,333 - MMJJ_RS00160 0.80 +0.9 30,395 - MMJJ_RS00160 0.86 -4.3 30,410 - MMJJ_RS00160 0.88 +0.2 30,410 - MMJJ_RS00160 0.88 -2.1 30,411 + MMJJ_RS00160 0.88 +0.2 30,411 + MMJJ_RS00160 0.88 +0.6 30,415 - MMJJ_RS00160 0.88 +1.1 30,459 - +0.2 30,459 - -0.9 30,523 - -0.7 30,531 + -1.0 30,549 - -1.7 30,554 + -0.6 30,554 + -1.2 30,554 + -1.9 30,561 - +1.1 30,566 - -2.8 30,566 - +1.6 30,566 - +2.6 30,571 - +0.8 30,571 - +1.1 30,572 + +1.5 30,572 + -0.6 30,574 + -0.2 30,592 - +1.6 30,622 - -0.1 30,623 + +0.7 30,623 + +2.8 30,624 - +0.6 30,636 + -0.5 30,638 - -3.9 30,869 - MMJJ_RS00165 0.28 +0.7 30,870 + MMJJ_RS00165 0.28 +1.7 30,870 + MMJJ_RS00165 0.28 -1.8 30,870 + MMJJ_RS00165 0.28 +0.9 30,885 - MMJJ_RS00165 0.30 +0.6 30,887 - MMJJ_RS00165 0.30 +0.1 30,912 - MMJJ_RS00165 0.33 +0.3 30,913 + MMJJ_RS00165 0.33 +0.2 30,932 + MMJJ_RS00165 0.35 +2.3 30,947 - MMJJ_RS00165 0.36 +1.0 30,947 - MMJJ_RS00165 0.36 -0.4 30,948 + MMJJ_RS00165 0.37 +2.9 30,948 + MMJJ_RS00165 0.37 -0.5 30,951 - MMJJ_RS00165 0.37 -0.0 30,967 - MMJJ_RS00165 0.39 -1.4 30,968 + MMJJ_RS00165 0.39 -0.4 31,002 - MMJJ_RS00165 0.43 -0.6 31,003 + MMJJ_RS00165 0.43 -0.1 31,003 + MMJJ_RS00165 0.43 -0.2 31,064 - MMJJ_RS00165 0.49 -4.1 31,086 - MMJJ_RS00165 0.52 +1.6 31,086 - MMJJ_RS00165 0.52 +0.6 31,086 - MMJJ_RS00165 0.52 -0.5 31,086 - MMJJ_RS00165 0.52 +1.0 31,088 - MMJJ_RS00165 0.52 -0.2 31,088 - MMJJ_RS00165 0.52 +0.3 31,088 - MMJJ_RS00165 0.52 -0.9 31,089 + MMJJ_RS00165 0.52 +1.5 31,093 - MMJJ_RS00165 0.53 +1.2 31,094 + MMJJ_RS00165 0.53 +1.6 31,100 - MMJJ_RS00165 0.53 -1.0 31,114 - +0.5 31,120 - MMJJ_RS00165 0.56 -0.5 31,125 + MMJJ_RS00165 0.56 -0.1 31,142 + MMJJ_RS00165 0.58 +1.3 31,180 - MMJJ_RS00165 0.62 -0.1 31,198 - MMJJ_RS00165 0.64 +1.0 31,198 - MMJJ_RS00165 0.64 -0.1 31,253 - MMJJ_RS00165 0.70 -0.2 31,284 + MMJJ_RS00165 0.74 -1.2 31,300 - MMJJ_RS00165 0.76 -0.7 31,304 - MMJJ_RS00165 0.76 -0.1 31,306 - MMJJ_RS00165 0.76 -1.4 31,404 + MMJJ_RS00165 0.87 -3.9 31,481 - +1.1 31,481 - +1.9 31,482 + -0.5
Or see this region's nucleotide sequence