Experiment: McCas_formate_complete phosphite 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01720 and MMJJ_RS01725 are separated by 215 nucleotides MMJJ_RS01725 and MMJJ_RS01730 are separated by 2 nucleotides
MMJJ_RS01720: MMJJ_RS01720 - hypothetical protein, at 332,644 to 333,876
_RS01720
MMJJ_RS01725: MMJJ_RS01725 - ABC transporter ATP-binding protein, at 334,092 to 334,817
_RS01725
MMJJ_RS01730: MMJJ_RS01730 - ABC transporter permease, at 334,820 to 336,013
_RS01730
Position (kb) 334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 333.120 kb on - strand, within MMJJ_RS01720 at 333.120 kb on - strand, within MMJJ_RS01720 at 333.121 kb on + strand, within MMJJ_RS01720 at 333.121 kb on + strand, within MMJJ_RS01720 at 333.121 kb on + strand, within MMJJ_RS01720 at 333.122 kb on - strand, within MMJJ_RS01720 at 333.123 kb on + strand, within MMJJ_RS01720 at 333.163 kb on - strand, within MMJJ_RS01720 at 333.164 kb on + strand, within MMJJ_RS01720 at 333.308 kb on + strand, within MMJJ_RS01720 at 333.342 kb on - strand, within MMJJ_RS01720 at 333.342 kb on - strand, within MMJJ_RS01720 at 333.342 kb on - strand, within MMJJ_RS01720 at 333.343 kb on + strand, within MMJJ_RS01720 at 333.344 kb on - strand, within MMJJ_RS01720 at 333.344 kb on - strand, within MMJJ_RS01720 at 333.344 kb on - strand, within MMJJ_RS01720 at 333.345 kb on + strand, within MMJJ_RS01720 at 333.345 kb on + strand, within MMJJ_RS01720 at 333.346 kb on - strand, within MMJJ_RS01720 at 333.347 kb on + strand, within MMJJ_RS01720 at 333.347 kb on + strand, within MMJJ_RS01720 at 333.347 kb on + strand, within MMJJ_RS01720 at 333.400 kb on + strand, within MMJJ_RS01720 at 333.411 kb on - strand, within MMJJ_RS01720 at 333.417 kb on - strand, within MMJJ_RS01720 at 333.418 kb on + strand, within MMJJ_RS01720 at 333.418 kb on + strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.422 kb on - strand, within MMJJ_RS01720 at 333.423 kb on + strand, within MMJJ_RS01720 at 333.423 kb on + strand, within MMJJ_RS01720 at 333.423 kb on + strand, within MMJJ_RS01720 at 333.423 kb on + strand, within MMJJ_RS01720 at 333.424 kb on - strand, within MMJJ_RS01720 at 333.424 kb on - strand, within MMJJ_RS01720 at 333.425 kb on + strand, within MMJJ_RS01720 at 333.434 kb on - strand, within MMJJ_RS01720 at 333.435 kb on + strand, within MMJJ_RS01720 at 333.435 kb on + strand, within MMJJ_RS01720 at 333.435 kb on + strand, within MMJJ_RS01720 at 333.482 kb on + strand, within MMJJ_RS01720 at 333.482 kb on + strand, within MMJJ_RS01720 at 333.502 kb on - strand, within MMJJ_RS01720 at 333.507 kb on - strand, within MMJJ_RS01720 at 333.519 kb on - strand, within MMJJ_RS01720 at 333.519 kb on - strand, within MMJJ_RS01720 at 333.520 kb on + strand, within MMJJ_RS01720 at 333.547 kb on - strand, within MMJJ_RS01720 at 333.547 kb on - strand, within MMJJ_RS01720 at 333.547 kb on - strand, within MMJJ_RS01720 at 333.554 kb on + strand, within MMJJ_RS01720 at 333.554 kb on + strand, within MMJJ_RS01720 at 333.563 kb on - strand, within MMJJ_RS01720 at 333.564 kb on + strand, within MMJJ_RS01720 at 333.564 kb on + strand, within MMJJ_RS01720 at 333.634 kb on - strand, within MMJJ_RS01720 at 333.634 kb on - strand, within MMJJ_RS01720 at 333.658 kb on - strand, within MMJJ_RS01720 at 333.658 kb on - strand, within MMJJ_RS01720 at 333.659 kb on + strand, within MMJJ_RS01720 at 333.665 kb on + strand, within MMJJ_RS01720 at 333.670 kb on - strand, within MMJJ_RS01720 at 333.670 kb on - strand, within MMJJ_RS01720 at 333.692 kb on - strand, within MMJJ_RS01720 at 333.692 kb on - strand, within MMJJ_RS01720 at 333.693 kb on + strand, within MMJJ_RS01720 at 333.693 kb on + strand, within MMJJ_RS01720 at 333.693 kb on + strand, within MMJJ_RS01720 at 333.693 kb on + strand, within MMJJ_RS01720 at 333.693 kb on + strand, within MMJJ_RS01720 at 333.724 kb on - strand, within MMJJ_RS01720 at 333.742 kb on - strand, within MMJJ_RS01720 at 333.743 kb on + strand, within MMJJ_RS01720 at 333.743 kb on + strand, within MMJJ_RS01720 at 333.743 kb on + strand, within MMJJ_RS01720 at 333.743 kb on + strand, within MMJJ_RS01720 at 333.743 kb on + strand, within MMJJ_RS01720 at 333.743 kb on + strand, within MMJJ_RS01720 at 333.744 kb on - strand, within MMJJ_RS01720 at 333.744 kb on - strand, within MMJJ_RS01720 at 333.777 kb on - strand at 333.778 kb on + strand at 333.781 kb on - strand at 333.788 kb on - strand at 333.789 kb on + strand at 333.816 kb on + strand at 333.838 kb on - strand at 333.845 kb on + strand at 333.845 kb on + strand at 333.847 kb on - strand at 333.850 kb on - strand at 333.880 kb on + strand at 333.911 kb on - strand at 333.927 kb on + strand at 333.928 kb on - strand at 333.928 kb on - strand at 333.928 kb on - strand at 333.929 kb on + strand at 333.929 kb on + strand at 333.929 kb on + strand at 333.931 kb on - strand at 333.931 kb on - strand at 333.932 kb on + strand at 333.935 kb on - strand at 333.942 kb on - strand at 333.942 kb on - strand at 333.943 kb on + strand at 333.943 kb on + strand at 333.943 kb on + strand at 333.973 kb on - strand at 334.000 kb on - strand at 334.001 kb on + strand at 334.023 kb on + strand at 334.035 kb on + strand at 334.050 kb on + strand at 334.063 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.145 kb on - strand at 334.190 kb on - strand, within MMJJ_RS01725 at 334.190 kb on - strand, within MMJJ_RS01725 at 334.196 kb on + strand, within MMJJ_RS01725 at 334.207 kb on - strand, within MMJJ_RS01725 at 334.208 kb on + strand, within MMJJ_RS01725 at 334.228 kb on + strand, within MMJJ_RS01725 at 334.252 kb on + strand, within MMJJ_RS01725 at 334.281 kb on + strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.402 kb on - strand, within MMJJ_RS01725 at 334.418 kb on - strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.620 kb on - strand, within MMJJ_RS01725 at 334.710 kb on - strand, within MMJJ_RS01725 at 334.711 kb on + strand, within MMJJ_RS01725 at 334.780 kb on - strand at 334.791 kb on - strand at 334.809 kb on - strand at 334.809 kb on - strand at 334.810 kb on + strand at 334.813 kb on + strand at 334.813 kb on + strand at 334.817 kb on - strand at 334.899 kb on + strand at 334.911 kb on + strand at 334.984 kb on + strand at 335.003 kb on - strand, within MMJJ_RS01730 at 335.015 kb on - strand, within MMJJ_RS01730 at 335.070 kb on + strand, within MMJJ_RS01730 at 335.141 kb on + strand, within MMJJ_RS01730 at 335.214 kb on + strand, within MMJJ_RS01730 at 335.220 kb on + strand, within MMJJ_RS01730 at 335.234 kb on + strand, within MMJJ_RS01730 at 335.267 kb on - strand, within MMJJ_RS01730 at 335.336 kb on - strand, within MMJJ_RS01730 at 335.337 kb on + strand, within MMJJ_RS01730 at 335.360 kb on + strand, within MMJJ_RS01730 at 335.365 kb on - strand, within MMJJ_RS01730 at 335.365 kb on - strand, within MMJJ_RS01730 at 335.376 kb on - strand, within MMJJ_RS01730 at 335.377 kb on + strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.467 kb on - strand, within MMJJ_RS01730 at 335.489 kb on + strand, within MMJJ_RS01730 at 335.519 kb on - strand, within MMJJ_RS01730 at 335.596 kb on - strand, within MMJJ_RS01730 at 335.597 kb on + strand, within MMJJ_RS01730 at 335.597 kb on + strand, within MMJJ_RS01730 at 335.613 kb on - strand, within MMJJ_RS01730 at 335.637 kb on + strand, within MMJJ_RS01730 at 335.643 kb on - strand, within MMJJ_RS01730 at 335.644 kb on + strand, within MMJJ_RS01730 at 335.679 kb on - strand, within MMJJ_RS01730 at 335.800 kb on - strand, within MMJJ_RS01730
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete phosphite 25 mM remove 333,120 - MMJJ_RS01720 0.39 +0.4 333,120 - MMJJ_RS01720 0.39 -1.4 333,121 + MMJJ_RS01720 0.39 -0.1 333,121 + MMJJ_RS01720 0.39 +0.1 333,121 + MMJJ_RS01720 0.39 -2.3 333,122 - MMJJ_RS01720 0.39 -0.0 333,123 + MMJJ_RS01720 0.39 +0.3 333,163 - MMJJ_RS01720 0.42 -0.9 333,164 + MMJJ_RS01720 0.42 -2.3 333,308 + MMJJ_RS01720 0.54 -1.0 333,342 - MMJJ_RS01720 0.57 -0.3 333,342 - MMJJ_RS01720 0.57 -1.0 333,342 - MMJJ_RS01720 0.57 -0.5 333,343 + MMJJ_RS01720 0.57 +0.9 333,344 - MMJJ_RS01720 0.57 -0.9 333,344 - MMJJ_RS01720 0.57 -0.5 333,344 - MMJJ_RS01720 0.57 -0.9 333,345 + MMJJ_RS01720 0.57 +0.7 333,345 + MMJJ_RS01720 0.57 -1.1 333,346 - MMJJ_RS01720 0.57 -1.1 333,347 + MMJJ_RS01720 0.57 +0.4 333,347 + MMJJ_RS01720 0.57 +3.3 333,347 + MMJJ_RS01720 0.57 +1.5 333,400 + MMJJ_RS01720 0.61 +1.6 333,411 - MMJJ_RS01720 0.62 +4.4 333,417 - MMJJ_RS01720 0.63 +0.9 333,418 + MMJJ_RS01720 0.63 -1.4 333,418 + MMJJ_RS01720 0.63 +0.2 333,422 - MMJJ_RS01720 0.63 -2.5 333,422 - MMJJ_RS01720 0.63 -0.9 333,422 - MMJJ_RS01720 0.63 +2.2 333,422 - MMJJ_RS01720 0.63 -1.5 333,422 - MMJJ_RS01720 0.63 +0.2 333,423 + MMJJ_RS01720 0.63 +0.8 333,423 + MMJJ_RS01720 0.63 -0.7 333,423 + MMJJ_RS01720 0.63 -0.4 333,423 + MMJJ_RS01720 0.63 +0.8 333,424 - MMJJ_RS01720 0.63 +1.6 333,424 - MMJJ_RS01720 0.63 -1.0 333,425 + MMJJ_RS01720 0.63 -1.6 333,434 - MMJJ_RS01720 0.64 -1.2 333,435 + MMJJ_RS01720 0.64 +2.3 333,435 + MMJJ_RS01720 0.64 -0.3 333,435 + MMJJ_RS01720 0.64 +0.2 333,482 + MMJJ_RS01720 0.68 -1.9 333,482 + MMJJ_RS01720 0.68 -0.7 333,502 - MMJJ_RS01720 0.70 -0.3 333,507 - MMJJ_RS01720 0.70 -0.2 333,519 - MMJJ_RS01720 0.71 -0.7 333,519 - MMJJ_RS01720 0.71 +0.6 333,520 + MMJJ_RS01720 0.71 +2.7 333,547 - MMJJ_RS01720 0.73 -2.4 333,547 - MMJJ_RS01720 0.73 -0.4 333,547 - MMJJ_RS01720 0.73 +0.8 333,554 + MMJJ_RS01720 0.74 +0.4 333,554 + MMJJ_RS01720 0.74 -2.8 333,563 - MMJJ_RS01720 0.75 -1.7 333,564 + MMJJ_RS01720 0.75 -0.4 333,564 + MMJJ_RS01720 0.75 +3.1 333,634 - MMJJ_RS01720 0.80 -1.6 333,634 - MMJJ_RS01720 0.80 +0.5 333,658 - MMJJ_RS01720 0.82 -0.4 333,658 - MMJJ_RS01720 0.82 -2.4 333,659 + MMJJ_RS01720 0.82 +0.1 333,665 + MMJJ_RS01720 0.83 -0.1 333,670 - MMJJ_RS01720 0.83 -1.9 333,670 - MMJJ_RS01720 0.83 +1.1 333,692 - MMJJ_RS01720 0.85 +0.1 333,692 - MMJJ_RS01720 0.85 +0.7 333,693 + MMJJ_RS01720 0.85 -0.3 333,693 + MMJJ_RS01720 0.85 -1.2 333,693 + MMJJ_RS01720 0.85 +1.1 333,693 + MMJJ_RS01720 0.85 -0.3 333,693 + MMJJ_RS01720 0.85 +1.2 333,724 - MMJJ_RS01720 0.88 -0.6 333,742 - MMJJ_RS01720 0.89 -0.9 333,743 + MMJJ_RS01720 0.89 +0.4 333,743 + MMJJ_RS01720 0.89 +1.8 333,743 + MMJJ_RS01720 0.89 -1.1 333,743 + MMJJ_RS01720 0.89 -0.8 333,743 + MMJJ_RS01720 0.89 -0.8 333,743 + MMJJ_RS01720 0.89 +0.1 333,744 - MMJJ_RS01720 0.89 +2.1 333,744 - MMJJ_RS01720 0.89 +1.6 333,777 - -1.9 333,778 + +0.2 333,781 - -1.1 333,788 - -1.8 333,789 + -0.2 333,816 + +0.6 333,838 - +0.3 333,845 + -0.6 333,845 + +0.4 333,847 - -0.6 333,850 - -0.9 333,880 + -0.8 333,911 - +0.2 333,927 + -0.2 333,928 - +0.7 333,928 - -0.8 333,928 - -0.1 333,929 + +2.5 333,929 + -0.0 333,929 + -0.2 333,931 - +2.8 333,931 - -0.7 333,932 + +0.9 333,935 - +0.4 333,942 - -1.3 333,942 - +0.1 333,943 + -0.3 333,943 + -0.2 333,943 + +0.3 333,973 - +1.1 334,000 - -1.2 334,001 + +2.1 334,023 + -0.1 334,035 + -0.2 334,050 + -0.9 334,063 - +3.4 334,093 - -0.2 334,093 - -0.5 334,093 - +0.6 334,093 - -0.7 334,094 + -1.5 334,094 + -0.7 334,094 + -0.5 334,094 + -0.1 334,094 + -0.6 334,145 - -1.3 334,190 - MMJJ_RS01725 0.13 -1.2 334,190 - MMJJ_RS01725 0.13 -0.6 334,196 + MMJJ_RS01725 0.14 +0.3 334,207 - MMJJ_RS01725 0.16 -0.7 334,208 + MMJJ_RS01725 0.16 -0.5 334,228 + MMJJ_RS01725 0.19 -1.2 334,252 + MMJJ_RS01725 0.22 -0.5 334,281 + MMJJ_RS01725 0.26 -0.8 334,400 - MMJJ_RS01725 0.42 -0.8 334,400 - MMJJ_RS01725 0.42 -1.0 334,400 - MMJJ_RS01725 0.42 -1.2 334,402 - MMJJ_RS01725 0.43 -0.7 334,418 - MMJJ_RS01725 0.45 -2.0 334,426 + MMJJ_RS01725 0.46 -0.6 334,426 + MMJJ_RS01725 0.46 -0.5 334,426 + MMJJ_RS01725 0.46 -1.0 334,620 - MMJJ_RS01725 0.73 +0.4 334,710 - MMJJ_RS01725 0.85 -0.2 334,711 + MMJJ_RS01725 0.85 +2.2 334,780 - +0.4 334,791 - +0.3 334,809 - -0.3 334,809 - -0.4 334,810 + -0.6 334,813 + -0.6 334,813 + +0.0 334,817 - -1.1 334,899 + -0.2 334,911 + +0.4 334,984 + +1.7 335,003 - MMJJ_RS01730 0.15 +1.5 335,015 - MMJJ_RS01730 0.16 -0.6 335,070 + MMJJ_RS01730 0.21 -0.5 335,141 + MMJJ_RS01730 0.27 -0.4 335,214 + MMJJ_RS01730 0.33 +2.7 335,220 + MMJJ_RS01730 0.34 +0.7 335,234 + MMJJ_RS01730 0.35 -0.4 335,267 - MMJJ_RS01730 0.37 +0.1 335,336 - MMJJ_RS01730 0.43 +0.5 335,337 + MMJJ_RS01730 0.43 +0.8 335,360 + MMJJ_RS01730 0.45 -0.1 335,365 - MMJJ_RS01730 0.46 +0.7 335,365 - MMJJ_RS01730 0.46 +1.3 335,376 - MMJJ_RS01730 0.47 +1.3 335,377 + MMJJ_RS01730 0.47 +0.5 335,423 - MMJJ_RS01730 0.51 +1.2 335,423 - MMJJ_RS01730 0.51 +0.1 335,423 - MMJJ_RS01730 0.51 -0.5 335,467 - MMJJ_RS01730 0.54 -0.4 335,489 + MMJJ_RS01730 0.56 -0.4 335,519 - MMJJ_RS01730 0.59 +1.1 335,596 - MMJJ_RS01730 0.65 -0.9 335,597 + MMJJ_RS01730 0.65 -0.7 335,597 + MMJJ_RS01730 0.65 +3.1 335,613 - MMJJ_RS01730 0.66 +1.8 335,637 + MMJJ_RS01730 0.68 -0.1 335,643 - MMJJ_RS01730 0.69 -1.2 335,644 + MMJJ_RS01730 0.69 -1.4 335,679 - MMJJ_RS01730 0.72 -0.3 335,800 - MMJJ_RS01730 0.82 +0.2
Or see this region's nucleotide sequence