Experiment: McCas_formate_complete Fluorophosphate 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04490 and MMJJ_RS04495 are separated by 9 nucleotides MMJJ_RS04495 and MMJJ_RS04500 are separated by 135 nucleotides MMJJ_RS04500 and MMJJ_RS04505 are separated by 112 nucleotides
MMJJ_RS04490: MMJJ_RS04490 - AIR synthase-related protein, at 835,155 to 838,124
_RS04490
MMJJ_RS04495: MMJJ_RS04495 - phosphoribosylformylglycinamidine synthase I, at 838,134 to 838,943
_RS04495
MMJJ_RS04500: MMJJ_RS04500 - hypothetical protein, at 839,079 to 839,438
_RS04500
MMJJ_RS04505: MMJJ_RS04505 - CDC48 family AAA ATPase, at 839,551 to 841,917
_RS04505
Position (kb) 839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 838.106 kb on - strand at 838.502 kb on - strand at 838.506 kb on + strand, within MMJJ_RS04495 at 838.585 kb on - strand, within MMJJ_RS04495 at 838.780 kb on - strand, within MMJJ_RS04495 at 838.996 kb on - strand at 838.996 kb on - strand at 839.028 kb on + strand at 839.033 kb on - strand at 839.034 kb on + strand at 839.034 kb on + strand at 839.048 kb on + strand at 839.053 kb on + strand at 839.058 kb on - strand at 839.064 kb on - strand at 839.064 kb on - strand at 839.065 kb on + strand at 839.095 kb on - strand at 839.183 kb on - strand, within MMJJ_RS04500 at 839.196 kb on + strand, within MMJJ_RS04500 at 839.202 kb on - strand, within MMJJ_RS04500 at 839.203 kb on + strand, within MMJJ_RS04500 at 839.205 kb on - strand, within MMJJ_RS04500 at 839.205 kb on - strand, within MMJJ_RS04500 at 839.205 kb on - strand, within MMJJ_RS04500 at 839.205 kb on - strand, within MMJJ_RS04500 at 839.205 kb on - strand, within MMJJ_RS04500 at 839.205 kb on - strand, within MMJJ_RS04500 at 839.205 kb on - strand, within MMJJ_RS04500 at 839.206 kb on + strand, within MMJJ_RS04500 at 839.206 kb on + strand, within MMJJ_RS04500 at 839.206 kb on + strand, within MMJJ_RS04500 at 839.206 kb on + strand, within MMJJ_RS04500 at 839.213 kb on + strand, within MMJJ_RS04500 at 839.213 kb on - strand at 839.246 kb on + strand, within MMJJ_RS04500 at 839.257 kb on - strand, within MMJJ_RS04500 at 839.258 kb on + strand, within MMJJ_RS04500 at 839.274 kb on - strand, within MMJJ_RS04500 at 839.288 kb on + strand, within MMJJ_RS04500 at 839.341 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.364 kb on - strand, within MMJJ_RS04500 at 839.365 kb on + strand, within MMJJ_RS04500 at 839.365 kb on + strand, within MMJJ_RS04500 at 839.365 kb on + strand, within MMJJ_RS04500 at 839.365 kb on + strand, within MMJJ_RS04500 at 839.436 kb on - strand at 839.437 kb on + strand at 839.441 kb on + strand at 839.441 kb on + strand at 839.442 kb on - strand at 839.442 kb on - strand at 839.443 kb on + strand at 839.446 kb on - strand at 839.446 kb on - strand at 839.446 kb on - strand at 839.454 kb on + strand at 839.522 kb on - strand at 839.530 kb on - strand at 839.532 kb on - strand at 839.592 kb on + strand at 839.766 kb on - strand at 839.790 kb on + strand, within MMJJ_RS04505 at 840.007 kb on - strand, within MMJJ_RS04505 at 840.008 kb on + strand, within MMJJ_RS04505 at 840.010 kb on + strand, within MMJJ_RS04505 at 840.096 kb on + strand, within MMJJ_RS04505 at 840.146 kb on + strand, within MMJJ_RS04505 at 840.155 kb on - strand, within MMJJ_RS04505 at 840.155 kb on - strand, within MMJJ_RS04505 at 840.191 kb on - strand, within MMJJ_RS04505
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Fluorophosphate 31.25 mM remove 838,106 - +1.9 838,502 - +1.3 838,506 + MMJJ_RS04495 0.46 -0.1 838,585 - MMJJ_RS04495 0.56 -0.7 838,780 - MMJJ_RS04495 0.80 +0.9 838,996 - -1.6 838,996 - +2.7 839,028 + +0.9 839,033 - +3.2 839,034 + -0.9 839,034 + -1.0 839,048 + -2.2 839,053 + +0.9 839,058 - +2.4 839,064 - +1.8 839,064 - +0.2 839,065 + +1.9 839,095 - +1.5 839,183 - MMJJ_RS04500 0.29 +0.0 839,196 + MMJJ_RS04500 0.33 +3.6 839,202 - MMJJ_RS04500 0.34 +1.1 839,203 + MMJJ_RS04500 0.34 +2.3 839,205 - MMJJ_RS04500 0.35 -1.1 839,205 - MMJJ_RS04500 0.35 -2.0 839,205 - MMJJ_RS04500 0.35 +0.1 839,205 - MMJJ_RS04500 0.35 +1.6 839,205 - MMJJ_RS04500 0.35 +0.9 839,205 - MMJJ_RS04500 0.35 -0.7 839,205 - MMJJ_RS04500 0.35 +2.4 839,206 + MMJJ_RS04500 0.35 +1.8 839,206 + MMJJ_RS04500 0.35 +2.3 839,206 + MMJJ_RS04500 0.35 +2.7 839,206 + MMJJ_RS04500 0.35 +1.4 839,213 + MMJJ_RS04500 0.37 -2.1 839,213 - +1.3 839,246 + MMJJ_RS04500 0.46 -0.9 839,257 - MMJJ_RS04500 0.49 +2.6 839,258 + MMJJ_RS04500 0.50 +1.9 839,274 - MMJJ_RS04500 0.54 -2.9 839,288 + MMJJ_RS04500 0.58 +0.6 839,341 - MMJJ_RS04500 0.73 -2.1 839,364 - MMJJ_RS04500 0.79 +1.8 839,364 - MMJJ_RS04500 0.79 +4.3 839,364 - MMJJ_RS04500 0.79 +2.6 839,364 - MMJJ_RS04500 0.79 -0.6 839,364 - MMJJ_RS04500 0.79 -2.3 839,364 - MMJJ_RS04500 0.79 +2.3 839,364 - MMJJ_RS04500 0.79 -1.6 839,364 - MMJJ_RS04500 0.79 +2.2 839,364 - MMJJ_RS04500 0.79 -0.8 839,364 - MMJJ_RS04500 0.79 +0.0 839,365 + MMJJ_RS04500 0.79 -1.7 839,365 + MMJJ_RS04500 0.79 +2.5 839,365 + MMJJ_RS04500 0.79 -1.0 839,365 + MMJJ_RS04500 0.79 +1.5 839,436 - -0.9 839,437 + +1.0 839,441 + -2.0 839,441 + -2.5 839,442 - -0.0 839,442 - -1.4 839,443 + +0.8 839,446 - +1.0 839,446 - -0.9 839,446 - +0.4 839,454 + +0.1 839,522 - +0.1 839,530 - -1.4 839,532 - -0.9 839,592 + +0.1 839,766 - +0.1 839,790 + MMJJ_RS04505 0.10 -0.4 840,007 - MMJJ_RS04505 0.19 +1.7 840,008 + MMJJ_RS04505 0.19 -1.4 840,010 + MMJJ_RS04505 0.19 +1.9 840,096 + MMJJ_RS04505 0.23 -0.1 840,146 + MMJJ_RS04505 0.25 -1.3 840,155 - MMJJ_RS04505 0.26 -0.7 840,155 - MMJJ_RS04505 0.26 +0.2 840,191 - MMJJ_RS04505 0.27 +0.9
Or see this region's nucleotide sequence