Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02165

Experiment: McCas_formate_complete Fluorophosphate 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02155 and MMJJ_RS02160 are separated by 77 nucleotidesMMJJ_RS02160 and MMJJ_RS02165 are separated by 34 nucleotidesMMJJ_RS02165 and MMJJ_RS02170 are separated by 169 nucleotidesMMJJ_RS02170 and MMJJ_RS02175 are separated by 9 nucleotides MMJJ_RS02155: MMJJ_RS02155 - DMT family transporter, at 409,412 to 410,302 _RS02155 MMJJ_RS02160: MMJJ_RS02160 - amino acid ABC transporter permease, at 410,380 to 411,039 _RS02160 MMJJ_RS02165: MMJJ_RS02165 - ABC transporter substrate-binding protein, at 411,074 to 411,868 _RS02165 MMJJ_RS02170: MMJJ_RS02170 - 2-thiouracil desulfurase family protein, at 412,038 to 412,586 _RS02170 MMJJ_RS02175: MMJJ_RS02175 - imidazoleglycerol-phosphate dehydratase HisB, at 412,596 to 413,168 _RS02175 Position (kb) 411 412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 410.086 kb on + strand, within MMJJ_RS02155at 410.150 kb on - strand, within MMJJ_RS02155at 410.151 kb on + strand, within MMJJ_RS02155at 410.275 kb on - strandat 410.276 kb on + strandat 410.305 kb on - strandat 410.331 kb on - strandat 410.351 kb on - strandat 410.352 kb on + strandat 410.352 kb on + strandat 410.352 kb on + strandat 410.355 kb on - strandat 410.356 kb on + strandat 410.356 kb on + strandat 410.370 kb on - strandat 410.371 kb on + strandat 410.374 kb on - strandat 410.438 kb on + strandat 410.457 kb on + strand, within MMJJ_RS02160at 410.460 kb on - strand, within MMJJ_RS02160at 410.460 kb on - strand, within MMJJ_RS02160at 410.460 kb on - strand, within MMJJ_RS02160at 410.461 kb on + strand, within MMJJ_RS02160at 410.461 kb on + strand, within MMJJ_RS02160at 410.474 kb on + strand, within MMJJ_RS02160at 410.477 kb on - strand, within MMJJ_RS02160at 410.477 kb on - strand, within MMJJ_RS02160at 410.478 kb on + strand, within MMJJ_RS02160at 410.508 kb on + strand, within MMJJ_RS02160at 410.513 kb on + strand, within MMJJ_RS02160at 410.555 kb on + strand, within MMJJ_RS02160at 410.593 kb on - strand, within MMJJ_RS02160at 410.611 kb on - strand, within MMJJ_RS02160at 410.637 kb on - strand, within MMJJ_RS02160at 410.638 kb on + strand, within MMJJ_RS02160at 410.639 kb on - strand, within MMJJ_RS02160at 410.646 kb on - strand, within MMJJ_RS02160at 410.737 kb on + strand, within MMJJ_RS02160at 410.794 kb on + strand, within MMJJ_RS02160at 410.819 kb on - strand, within MMJJ_RS02160at 410.820 kb on + strand, within MMJJ_RS02160at 410.870 kb on - strand, within MMJJ_RS02160at 410.871 kb on + strand, within MMJJ_RS02160at 410.871 kb on + strand, within MMJJ_RS02160at 410.878 kb on - strand, within MMJJ_RS02160at 410.884 kb on - strand, within MMJJ_RS02160at 410.885 kb on + strand, within MMJJ_RS02160at 411.055 kb on + strandat 411.080 kb on - strandat 411.081 kb on + strandat 411.081 kb on + strandat 411.161 kb on - strand, within MMJJ_RS02165at 411.162 kb on + strand, within MMJJ_RS02165at 411.191 kb on - strand, within MMJJ_RS02165at 411.260 kb on - strand, within MMJJ_RS02165at 411.261 kb on + strand, within MMJJ_RS02165at 411.261 kb on + strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.264 kb on - strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.265 kb on + strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.268 kb on - strand, within MMJJ_RS02165at 411.331 kb on + strand, within MMJJ_RS02165at 411.335 kb on + strand, within MMJJ_RS02165at 411.336 kb on - strand, within MMJJ_RS02165at 411.401 kb on - strand, within MMJJ_RS02165at 411.411 kb on + strand, within MMJJ_RS02165at 411.422 kb on - strand, within MMJJ_RS02165at 411.471 kb on + strand, within MMJJ_RS02165at 411.471 kb on + strand, within MMJJ_RS02165at 411.549 kb on + strand, within MMJJ_RS02165at 411.558 kb on - strand, within MMJJ_RS02165at 411.559 kb on + strand, within MMJJ_RS02165at 411.656 kb on - strand, within MMJJ_RS02165at 411.657 kb on + strand, within MMJJ_RS02165at 411.657 kb on + strand, within MMJJ_RS02165at 411.735 kb on + strand, within MMJJ_RS02165at 411.854 kb on - strandat 411.860 kb on + strandat 411.916 kb on - strandat 411.991 kb on + strandat 412.039 kb on - strandat 412.110 kb on - strand, within MMJJ_RS02170at 412.149 kb on + strand, within MMJJ_RS02170at 412.211 kb on - strand, within MMJJ_RS02170at 412.211 kb on - strand, within MMJJ_RS02170at 412.212 kb on + strand, within MMJJ_RS02170at 412.212 kb on + strand, within MMJJ_RS02170at 412.285 kb on + strand, within MMJJ_RS02170at 412.287 kb on - strand, within MMJJ_RS02170at 412.287 kb on - strand, within MMJJ_RS02170at 412.287 kb on - strand, within MMJJ_RS02170at 412.288 kb on + strand, within MMJJ_RS02170at 412.288 kb on + strand, within MMJJ_RS02170at 412.288 kb on + strand, within MMJJ_RS02170at 412.294 kb on + strand, within MMJJ_RS02170at 412.311 kb on - strand, within MMJJ_RS02170at 412.314 kb on + strand, within MMJJ_RS02170at 412.315 kb on - strand, within MMJJ_RS02170at 412.316 kb on + strand, within MMJJ_RS02170at 412.316 kb on + strand, within MMJJ_RS02170at 412.333 kb on + strand, within MMJJ_RS02170at 412.348 kb on + strand, within MMJJ_RS02170at 412.396 kb on + strand, within MMJJ_RS02170at 412.396 kb on + strand, within MMJJ_RS02170at 412.413 kb on - strand, within MMJJ_RS02170at 412.473 kb on - strand, within MMJJ_RS02170at 412.478 kb on + strand, within MMJJ_RS02170at 412.495 kb on + strand, within MMJJ_RS02170at 412.543 kb on + strandat 412.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Fluorophosphate 31.25 mM
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410,086 + MMJJ_RS02155 0.76 +0.4
410,150 - MMJJ_RS02155 0.83 -1.2
410,151 + MMJJ_RS02155 0.83 -0.3
410,275 - +1.3
410,276 + -1.8
410,305 - -1.0
410,331 - +0.7
410,351 - -2.8
410,352 + -0.8
410,352 + -0.6
410,352 + -0.0
410,355 - +0.8
410,356 + -0.6
410,356 + -0.8
410,370 - +1.2
410,371 + +2.3
410,374 - +2.3
410,438 + -1.2
410,457 + MMJJ_RS02160 0.12 -1.7
410,460 - MMJJ_RS02160 0.12 +0.2
410,460 - MMJJ_RS02160 0.12 -0.7
410,460 - MMJJ_RS02160 0.12 -1.1
410,461 + MMJJ_RS02160 0.12 -2.9
410,461 + MMJJ_RS02160 0.12 +2.4
410,474 + MMJJ_RS02160 0.14 -1.5
410,477 - MMJJ_RS02160 0.15 +0.1
410,477 - MMJJ_RS02160 0.15 +2.3
410,478 + MMJJ_RS02160 0.15 +0.3
410,508 + MMJJ_RS02160 0.19 -0.9
410,513 + MMJJ_RS02160 0.20 +0.6
410,555 + MMJJ_RS02160 0.27 +0.9
410,593 - MMJJ_RS02160 0.32 -1.4
410,611 - MMJJ_RS02160 0.35 +0.8
410,637 - MMJJ_RS02160 0.39 +0.9
410,638 + MMJJ_RS02160 0.39 -1.4
410,639 - MMJJ_RS02160 0.39 -0.7
410,646 - MMJJ_RS02160 0.40 +1.9
410,737 + MMJJ_RS02160 0.54 -0.5
410,794 + MMJJ_RS02160 0.63 -0.1
410,819 - MMJJ_RS02160 0.67 -1.3
410,820 + MMJJ_RS02160 0.67 +1.6
410,870 - MMJJ_RS02160 0.74 -0.4
410,871 + MMJJ_RS02160 0.74 -2.3
410,871 + MMJJ_RS02160 0.74 -1.3
410,878 - MMJJ_RS02160 0.75 +2.6
410,884 - MMJJ_RS02160 0.76 -1.3
410,885 + MMJJ_RS02160 0.77 +2.1
411,055 + +3.0
411,080 - +0.9
411,081 + -1.5
411,081 + -0.8
411,161 - MMJJ_RS02165 0.11 -2.5
411,162 + MMJJ_RS02165 0.11 -3.5
411,191 - MMJJ_RS02165 0.15 -1.3
411,260 - MMJJ_RS02165 0.23 +1.1
411,261 + MMJJ_RS02165 0.24 +1.2
411,261 + MMJJ_RS02165 0.24 +0.2
411,264 - MMJJ_RS02165 0.24 +0.2
411,264 - MMJJ_RS02165 0.24 -0.4
411,264 - MMJJ_RS02165 0.24 +2.0
411,265 + MMJJ_RS02165 0.24 +0.1
411,265 + MMJJ_RS02165 0.24 +0.4
411,265 + MMJJ_RS02165 0.24 +2.1
411,268 - MMJJ_RS02165 0.24 +4.0
411,268 - MMJJ_RS02165 0.24 -3.9
411,268 - MMJJ_RS02165 0.24 -2.1
411,331 + MMJJ_RS02165 0.32 -1.3
411,335 + MMJJ_RS02165 0.33 -1.4
411,336 - MMJJ_RS02165 0.33 -0.4
411,401 - MMJJ_RS02165 0.41 +2.1
411,411 + MMJJ_RS02165 0.42 +0.7
411,422 - MMJJ_RS02165 0.44 +1.5
411,471 + MMJJ_RS02165 0.50 -0.6
411,471 + MMJJ_RS02165 0.50 +2.4
411,549 + MMJJ_RS02165 0.60 +0.5
411,558 - MMJJ_RS02165 0.61 +1.4
411,559 + MMJJ_RS02165 0.61 -3.5
411,656 - MMJJ_RS02165 0.73 -0.5
411,657 + MMJJ_RS02165 0.73 +1.9
411,657 + MMJJ_RS02165 0.73 +2.0
411,735 + MMJJ_RS02165 0.83 +2.5
411,854 - +1.4
411,860 + -2.1
411,916 - +0.9
411,991 + +1.8
412,039 - +1.4
412,110 - MMJJ_RS02170 0.13 +0.3
412,149 + MMJJ_RS02170 0.20 -1.4
412,211 - MMJJ_RS02170 0.32 -1.8
412,211 - MMJJ_RS02170 0.32 -1.0
412,212 + MMJJ_RS02170 0.32 -1.8
412,212 + MMJJ_RS02170 0.32 +2.1
412,285 + MMJJ_RS02170 0.45 -1.4
412,287 - MMJJ_RS02170 0.45 -2.2
412,287 - MMJJ_RS02170 0.45 -1.3
412,287 - MMJJ_RS02170 0.45 -0.9
412,288 + MMJJ_RS02170 0.46 +0.6
412,288 + MMJJ_RS02170 0.46 +1.3
412,288 + MMJJ_RS02170 0.46 -0.6
412,294 + MMJJ_RS02170 0.47 +0.7
412,311 - MMJJ_RS02170 0.50 +0.9
412,314 + MMJJ_RS02170 0.50 -2.2
412,315 - MMJJ_RS02170 0.50 +6.5
412,316 + MMJJ_RS02170 0.51 -0.7
412,316 + MMJJ_RS02170 0.51 +1.1
412,333 + MMJJ_RS02170 0.54 -0.7
412,348 + MMJJ_RS02170 0.56 +1.7
412,396 + MMJJ_RS02170 0.65 -1.3
412,396 + MMJJ_RS02170 0.65 +1.1
412,413 - MMJJ_RS02170 0.68 -2.1
412,473 - MMJJ_RS02170 0.79 -1.8
412,478 + MMJJ_RS02170 0.80 -1.3
412,495 + MMJJ_RS02170 0.83 +1.8
412,543 + -1.2
412,717 + +0.7

Or see this region's nucleotide sequence