Experiment: McCas_formate_complete Spiramycin 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03245 and MMJJ_RS03250 are separated by 154 nucleotides MMJJ_RS03250 and MMJJ_RS03255 are separated by 172 nucleotides MMJJ_RS03255 and MMJJ_RS03260 are separated by 99 nucleotides MMJJ_RS03260 and MMJJ_RS03265 are separated by 276 nucleotides
MMJJ_RS03245: MMJJ_RS03245 - UMP kinase, at 613,994 to 614,671
_RS03245
MMJJ_RS03250: MMJJ_RS03250 - DUF2116 family Zn-ribbon domain-containing protein, at 614,826 to 615,008
_RS03250
MMJJ_RS03255: MMJJ_RS03255 - tRNA-Met, at 615,181 to 615,259
_RS03255
MMJJ_RS03260: MMJJ_RS03260 - tRNA-Met, at 615,359 to 615,437
_RS03260
MMJJ_RS03265: MMJJ_RS03265 - S-layer protein, at 615,714 to 617,330
_RS03265
Position (kb) 615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 614.432 kb on - strand, within MMJJ_RS03245 at 614.663 kb on + strand at 614.686 kb on + strand at 614.773 kb on - strand at 614.777 kb on - strand at 614.777 kb on - strand at 614.804 kb on - strand at 614.805 kb on + strand at 614.805 kb on + strand at 614.807 kb on - strand at 614.807 kb on - strand at 614.848 kb on - strand, within MMJJ_RS03250 at 614.848 kb on - strand, within MMJJ_RS03250 at 614.848 kb on - strand, within MMJJ_RS03250 at 614.992 kb on + strand at 615.042 kb on + strand at 615.058 kb on - strand at 615.265 kb on - strand at 615.266 kb on + strand at 615.343 kb on - strand at 615.346 kb on - strand at 615.346 kb on - strand at 615.346 kb on - strand at 615.347 kb on + strand at 615.459 kb on - strand at 615.459 kb on - strand at 615.498 kb on + strand at 615.498 kb on + strand at 615.567 kb on - strand at 615.569 kb on - strand at 615.637 kb on + strand at 615.694 kb on - strand at 615.716 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Spiramycin 0.1 mM remove 614,432 - MMJJ_RS03245 0.65 -1.9 614,663 + -2.3 614,686 + +0.7 614,773 - +0.8 614,777 - -0.1 614,777 - -0.7 614,804 - -0.7 614,805 + +0.5 614,805 + -1.7 614,807 - +0.4 614,807 - -1.6 614,848 - MMJJ_RS03250 0.12 -2.0 614,848 - MMJJ_RS03250 0.12 +1.0 614,848 - MMJJ_RS03250 0.12 -0.0 614,992 + +1.1 615,042 + +0.1 615,058 - +1.1 615,265 - +0.9 615,266 + +1.9 615,343 - -1.2 615,346 - -1.3 615,346 - +0.1 615,346 - +1.2 615,347 + -1.6 615,459 - +1.0 615,459 - +3.1 615,498 + +1.1 615,498 + +1.7 615,567 - +0.5 615,569 - -1.5 615,637 + -1.3 615,694 - -3.1 615,716 + -0.9
Or see this region's nucleotide sequence