Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03180

Experiment: McCas_formate_complete Spiramycin 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03170 and MMJJ_RS03175 are separated by 9 nucleotidesMMJJ_RS03175 and MMJJ_RS03180 are separated by 10 nucleotidesMMJJ_RS03180 and MMJJ_RS03185 are separated by 42 nucleotides MMJJ_RS03170: MMJJ_RS03170 - DUF5612 domain-containing protein, at 599,314 to 599,967 _RS03170 MMJJ_RS03175: MMJJ_RS03175 - zinc metalloprotease HtpX, at 599,977 to 600,834 _RS03175 MMJJ_RS03180: MMJJ_RS03180 - pantoate kinase, at 600,845 to 601,720 _RS03180 MMJJ_RS03185: MMJJ_RS03185 - alanine--tRNA ligase, at 601,763 to 604,441 _RS03185 Position (kb) 600 601 602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 599.845 kb on + strand, within MMJJ_RS03170at 599.873 kb on - strand, within MMJJ_RS03170at 599.873 kb on - strand, within MMJJ_RS03170at 599.873 kb on - strand, within MMJJ_RS03170at 599.873 kb on - strand, within MMJJ_RS03170at 599.874 kb on + strand, within MMJJ_RS03170at 599.874 kb on + strand, within MMJJ_RS03170at 599.878 kb on - strand, within MMJJ_RS03170at 599.878 kb on - strand, within MMJJ_RS03170at 599.891 kb on + strand, within MMJJ_RS03170at 599.902 kb on - strandat 599.916 kb on - strandat 599.916 kb on - strandat 599.917 kb on + strandat 599.923 kb on - strandat 599.923 kb on - strandat 599.923 kb on - strandat 599.924 kb on + strandat 599.924 kb on + strandat 599.925 kb on - strandat 599.929 kb on - strandat 599.930 kb on + strandat 599.930 kb on + strandat 599.948 kb on + strandat 599.948 kb on + strandat 599.953 kb on + strandat 599.953 kb on + strandat 599.983 kb on - strandat 599.987 kb on - strandat 600.056 kb on + strandat 600.088 kb on - strand, within MMJJ_RS03175at 600.089 kb on + strand, within MMJJ_RS03175at 600.222 kb on + strand, within MMJJ_RS03175at 600.222 kb on + strand, within MMJJ_RS03175at 600.280 kb on - strand, within MMJJ_RS03175at 600.374 kb on - strand, within MMJJ_RS03175at 600.375 kb on + strand, within MMJJ_RS03175at 600.421 kb on + strand, within MMJJ_RS03175at 600.421 kb on + strand, within MMJJ_RS03175at 600.433 kb on - strand, within MMJJ_RS03175at 600.433 kb on - strand, within MMJJ_RS03175at 600.433 kb on - strand, within MMJJ_RS03175at 600.434 kb on + strand, within MMJJ_RS03175at 600.434 kb on + strand, within MMJJ_RS03175at 600.434 kb on + strand, within MMJJ_RS03175at 600.434 kb on + strand, within MMJJ_RS03175at 600.504 kb on - strand, within MMJJ_RS03175at 600.515 kb on + strand, within MMJJ_RS03175at 600.534 kb on - strand, within MMJJ_RS03175at 600.558 kb on - strand, within MMJJ_RS03175at 600.567 kb on - strand, within MMJJ_RS03175at 600.568 kb on + strand, within MMJJ_RS03175at 600.568 kb on + strand, within MMJJ_RS03175at 600.595 kb on + strand, within MMJJ_RS03175at 600.610 kb on - strand, within MMJJ_RS03175at 600.671 kb on - strand, within MMJJ_RS03175at 600.671 kb on - strand, within MMJJ_RS03175at 600.671 kb on - strand, within MMJJ_RS03175at 600.672 kb on + strand, within MMJJ_RS03175at 600.672 kb on + strand, within MMJJ_RS03175at 600.672 kb on + strand, within MMJJ_RS03175at 600.672 kb on + strand, within MMJJ_RS03175at 600.685 kb on - strand, within MMJJ_RS03175at 600.685 kb on - strand, within MMJJ_RS03175at 600.686 kb on + strand, within MMJJ_RS03175at 600.698 kb on - strand, within MMJJ_RS03175at 600.699 kb on + strand, within MMJJ_RS03175at 600.705 kb on + strand, within MMJJ_RS03175at 600.713 kb on + strand, within MMJJ_RS03175at 600.724 kb on - strand, within MMJJ_RS03175at 600.724 kb on - strand, within MMJJ_RS03175at 600.725 kb on + strand, within MMJJ_RS03175at 600.736 kb on - strand, within MMJJ_RS03175at 600.794 kb on + strandat 600.794 kb on + strandat 600.808 kb on - strandat 600.808 kb on - strandat 600.809 kb on + strandat 600.821 kb on + strandat 600.825 kb on - strandat 600.825 kb on - strandat 600.825 kb on - strandat 600.839 kb on + strandat 600.839 kb on + strandat 600.846 kb on - strandat 601.490 kb on + strand, within MMJJ_RS03180at 601.886 kb on - strandat 602.199 kb on + strand, within MMJJ_RS03185

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Spiramycin 0.1 mM
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599,845 + MMJJ_RS03170 0.81 -0.7
599,873 - MMJJ_RS03170 0.85 -0.3
599,873 - MMJJ_RS03170 0.85 -3.6
599,873 - MMJJ_RS03170 0.85 -1.5
599,873 - MMJJ_RS03170 0.85 +1.1
599,874 + MMJJ_RS03170 0.86 -4.4
599,874 + MMJJ_RS03170 0.86 -3.0
599,878 - MMJJ_RS03170 0.86 -1.1
599,878 - MMJJ_RS03170 0.86 -2.5
599,891 + MMJJ_RS03170 0.88 -3.9
599,902 - -1.5
599,916 - -1.3
599,916 - -0.8
599,917 + -2.4
599,923 - -1.5
599,923 - -1.8
599,923 - +1.9
599,924 + -0.9
599,924 + -1.9
599,925 - -0.2
599,929 - -2.8
599,930 + -1.0
599,930 + -1.0
599,948 + -2.6
599,948 + +0.1
599,953 + -2.7
599,953 + -3.2
599,983 - -2.2
599,987 - -1.2
600,056 + +0.4
600,088 - MMJJ_RS03175 0.13 -1.7
600,089 + MMJJ_RS03175 0.13 +0.0
600,222 + MMJJ_RS03175 0.29 -0.7
600,222 + MMJJ_RS03175 0.29 -0.7
600,280 - MMJJ_RS03175 0.35 +1.6
600,374 - MMJJ_RS03175 0.46 +2.0
600,375 + MMJJ_RS03175 0.46 -1.2
600,421 + MMJJ_RS03175 0.52 -0.5
600,421 + MMJJ_RS03175 0.52 -1.2
600,433 - MMJJ_RS03175 0.53 +1.4
600,433 - MMJJ_RS03175 0.53 +2.9
600,433 - MMJJ_RS03175 0.53 -1.6
600,434 + MMJJ_RS03175 0.53 -1.8
600,434 + MMJJ_RS03175 0.53 -0.1
600,434 + MMJJ_RS03175 0.53 -2.5
600,434 + MMJJ_RS03175 0.53 -0.5
600,504 - MMJJ_RS03175 0.61 -4.6
600,515 + MMJJ_RS03175 0.63 -2.7
600,534 - MMJJ_RS03175 0.65 -2.5
600,558 - MMJJ_RS03175 0.68 +0.5
600,567 - MMJJ_RS03175 0.69 -3.8
600,568 + MMJJ_RS03175 0.69 -1.8
600,568 + MMJJ_RS03175 0.69 -2.8
600,595 + MMJJ_RS03175 0.72 -2.5
600,610 - MMJJ_RS03175 0.74 -1.7
600,671 - MMJJ_RS03175 0.81 -0.7
600,671 - MMJJ_RS03175 0.81 -0.6
600,671 - MMJJ_RS03175 0.81 -1.5
600,672 + MMJJ_RS03175 0.81 -3.0
600,672 + MMJJ_RS03175 0.81 +0.5
600,672 + MMJJ_RS03175 0.81 +0.6
600,672 + MMJJ_RS03175 0.81 +1.9
600,685 - MMJJ_RS03175 0.83 +3.3
600,685 - MMJJ_RS03175 0.83 -3.5
600,686 + MMJJ_RS03175 0.83 +1.7
600,698 - MMJJ_RS03175 0.84 -0.3
600,699 + MMJJ_RS03175 0.84 -0.8
600,705 + MMJJ_RS03175 0.85 +1.7
600,713 + MMJJ_RS03175 0.86 -0.2
600,724 - MMJJ_RS03175 0.87 +0.7
600,724 - MMJJ_RS03175 0.87 +0.5
600,725 + MMJJ_RS03175 0.87 +0.5
600,736 - MMJJ_RS03175 0.88 -1.0
600,794 + +4.4
600,794 + +0.5
600,808 - -1.1
600,808 - +1.5
600,809 + -1.7
600,821 + +0.2
600,825 - -0.7
600,825 - +0.2
600,825 - +1.0
600,839 + +1.0
600,839 + +2.4
600,846 - -0.5
601,490 + MMJJ_RS03180 0.74 -1.0
601,886 - +1.1
602,199 + MMJJ_RS03185 0.16 -0.7

Or see this region's nucleotide sequence