Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03530

Experiment: McCas_formate_complete Ticarcillin 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03525 and MMJJ_RS03530 are separated by 42 nucleotidesMMJJ_RS03530 and MMJJ_RS03535 are separated by 133 nucleotides MMJJ_RS03525: MMJJ_RS03525 - 2-hydroxyacyl-CoA dehydratase family protein, at 659,970 to 661,091 _RS03525 MMJJ_RS03530: MMJJ_RS03530 - phosphate ABC transporter substrate-binding protein, at 661,134 to 661,961 _RS03530 MMJJ_RS03535: MMJJ_RS03535 - hypothetical protein, at 662,095 to 662,973 _RS03535 Position (kb) 661 662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 660.149 kb on - strand, within MMJJ_RS03525at 660.175 kb on - strand, within MMJJ_RS03525at 660.276 kb on + strand, within MMJJ_RS03525at 660.276 kb on + strand, within MMJJ_RS03525at 660.334 kb on - strand, within MMJJ_RS03525at 660.334 kb on - strand, within MMJJ_RS03525at 660.334 kb on - strand, within MMJJ_RS03525at 660.335 kb on + strand, within MMJJ_RS03525at 660.335 kb on + strand, within MMJJ_RS03525at 660.343 kb on - strand, within MMJJ_RS03525at 660.344 kb on + strand, within MMJJ_RS03525at 660.410 kb on + strand, within MMJJ_RS03525at 660.437 kb on - strand, within MMJJ_RS03525at 660.481 kb on - strand, within MMJJ_RS03525at 660.481 kb on - strand, within MMJJ_RS03525at 660.482 kb on + strand, within MMJJ_RS03525at 660.511 kb on - strand, within MMJJ_RS03525at 660.512 kb on + strand, within MMJJ_RS03525at 660.573 kb on - strand, within MMJJ_RS03525at 660.573 kb on - strand, within MMJJ_RS03525at 660.586 kb on - strand, within MMJJ_RS03525at 660.586 kb on - strand, within MMJJ_RS03525at 660.586 kb on - strand, within MMJJ_RS03525at 660.586 kb on - strand, within MMJJ_RS03525at 660.587 kb on + strand, within MMJJ_RS03525at 660.641 kb on - strand, within MMJJ_RS03525at 660.658 kb on + strand, within MMJJ_RS03525at 660.734 kb on - strand, within MMJJ_RS03525at 660.745 kb on - strand, within MMJJ_RS03525at 660.745 kb on - strand, within MMJJ_RS03525at 660.792 kb on - strand, within MMJJ_RS03525at 660.898 kb on - strand, within MMJJ_RS03525at 660.898 kb on - strand, within MMJJ_RS03525at 660.926 kb on + strand, within MMJJ_RS03525at 660.926 kb on + strand, within MMJJ_RS03525at 660.926 kb on + strand, within MMJJ_RS03525at 660.926 kb on + strand, within MMJJ_RS03525at 660.927 kb on - strand, within MMJJ_RS03525at 660.930 kb on - strand, within MMJJ_RS03525at 661.055 kb on + strandat 661.115 kb on - strandat 661.239 kb on + strand, within MMJJ_RS03530at 661.262 kb on + strand, within MMJJ_RS03530at 661.265 kb on + strand, within MMJJ_RS03530at 661.293 kb on - strand, within MMJJ_RS03530at 661.293 kb on - strand, within MMJJ_RS03530at 661.294 kb on + strand, within MMJJ_RS03530at 661.295 kb on - strand, within MMJJ_RS03530at 661.296 kb on + strand, within MMJJ_RS03530at 661.296 kb on + strand, within MMJJ_RS03530at 661.307 kb on - strand, within MMJJ_RS03530at 661.308 kb on + strand, within MMJJ_RS03530at 661.308 kb on + strand, within MMJJ_RS03530at 661.310 kb on - strand, within MMJJ_RS03530at 661.322 kb on + strand, within MMJJ_RS03530at 661.356 kb on + strand, within MMJJ_RS03530at 661.406 kb on + strand, within MMJJ_RS03530at 661.429 kb on + strand, within MMJJ_RS03530at 661.436 kb on - strand, within MMJJ_RS03530at 661.440 kb on + strand, within MMJJ_RS03530at 661.511 kb on - strand, within MMJJ_RS03530at 661.512 kb on + strand, within MMJJ_RS03530at 661.512 kb on + strand, within MMJJ_RS03530at 661.534 kb on + strand, within MMJJ_RS03530at 661.550 kb on - strand, within MMJJ_RS03530at 661.580 kb on - strand, within MMJJ_RS03530at 661.580 kb on - strand, within MMJJ_RS03530at 661.580 kb on - strand, within MMJJ_RS03530at 661.585 kb on - strand, within MMJJ_RS03530at 661.585 kb on - strand, within MMJJ_RS03530at 661.585 kb on - strand, within MMJJ_RS03530at 661.585 kb on - strand, within MMJJ_RS03530at 661.585 kb on - strand, within MMJJ_RS03530at 661.586 kb on + strand, within MMJJ_RS03530at 661.586 kb on + strand, within MMJJ_RS03530at 661.586 kb on + strand, within MMJJ_RS03530at 661.586 kb on + strand, within MMJJ_RS03530at 661.586 kb on + strand, within MMJJ_RS03530at 661.591 kb on - strand, within MMJJ_RS03530at 661.591 kb on - strand, within MMJJ_RS03530at 661.591 kb on - strand, within MMJJ_RS03530at 661.591 kb on - strand, within MMJJ_RS03530at 661.591 kb on - strand, within MMJJ_RS03530at 661.592 kb on + strand, within MMJJ_RS03530at 661.592 kb on + strand, within MMJJ_RS03530at 661.592 kb on + strand, within MMJJ_RS03530at 661.616 kb on - strand, within MMJJ_RS03530at 661.617 kb on + strand, within MMJJ_RS03530at 661.617 kb on + strand, within MMJJ_RS03530at 661.625 kb on - strand, within MMJJ_RS03530at 661.625 kb on - strand, within MMJJ_RS03530at 661.738 kb on + strand, within MMJJ_RS03530at 661.747 kb on - strand, within MMJJ_RS03530at 661.772 kb on - strand, within MMJJ_RS03530at 661.772 kb on - strand, within MMJJ_RS03530at 661.777 kb on - strand, within MMJJ_RS03530at 661.792 kb on - strand, within MMJJ_RS03530at 661.792 kb on - strand, within MMJJ_RS03530at 661.792 kb on - strand, within MMJJ_RS03530at 661.814 kb on - strand, within MMJJ_RS03530at 661.827 kb on - strand, within MMJJ_RS03530at 661.828 kb on + strand, within MMJJ_RS03530at 661.828 kb on + strand, within MMJJ_RS03530at 661.829 kb on - strand, within MMJJ_RS03530at 661.830 kb on + strand, within MMJJ_RS03530at 661.830 kb on + strand, within MMJJ_RS03530at 661.835 kb on + strand, within MMJJ_RS03530at 661.856 kb on - strand, within MMJJ_RS03530at 661.954 kb on - strandat 661.955 kb on + strandat 661.974 kb on - strandat 661.993 kb on - strandat 661.994 kb on + strandat 661.996 kb on - strandat 661.997 kb on + strandat 661.997 kb on + strandat 661.997 kb on + strandat 661.997 kb on + strandat 662.000 kb on - strandat 662.000 kb on - strandat 662.001 kb on + strandat 662.025 kb on - strandat 662.061 kb on + strandat 662.065 kb on - strandat 662.090 kb on + strandat 662.090 kb on + strandat 662.091 kb on - strandat 662.092 kb on + strandat 662.092 kb on + strandat 662.092 kb on + strandat 662.095 kb on + strandat 662.100 kb on - strandat 662.132 kb on - strandat 662.132 kb on - strandat 662.132 kb on - strandat 662.147 kb on - strandat 662.169 kb on - strandat 662.236 kb on - strand, within MMJJ_RS03535at 662.236 kb on - strand, within MMJJ_RS03535at 662.237 kb on + strand, within MMJJ_RS03535at 662.238 kb on - strand, within MMJJ_RS03535at 662.239 kb on + strand, within MMJJ_RS03535at 662.239 kb on + strand, within MMJJ_RS03535at 662.244 kb on - strand, within MMJJ_RS03535at 662.244 kb on - strand, within MMJJ_RS03535at 662.252 kb on + strand, within MMJJ_RS03535at 662.318 kb on - strand, within MMJJ_RS03535at 662.319 kb on + strand, within MMJJ_RS03535at 662.319 kb on + strand, within MMJJ_RS03535at 662.319 kb on + strand, within MMJJ_RS03535at 662.323 kb on + strand, within MMJJ_RS03535at 662.348 kb on - strand, within MMJJ_RS03535at 662.348 kb on - strand, within MMJJ_RS03535at 662.348 kb on - strand, within MMJJ_RS03535at 662.348 kb on - strand, within MMJJ_RS03535at 662.349 kb on + strand, within MMJJ_RS03535at 662.349 kb on + strand, within MMJJ_RS03535at 662.350 kb on - strand, within MMJJ_RS03535at 662.350 kb on - strand, within MMJJ_RS03535at 662.350 kb on - strand, within MMJJ_RS03535at 662.350 kb on - strand, within MMJJ_RS03535at 662.351 kb on + strand, within MMJJ_RS03535at 662.351 kb on + strand, within MMJJ_RS03535at 662.351 kb on + strand, within MMJJ_RS03535at 662.359 kb on - strand, within MMJJ_RS03535at 662.387 kb on + strand, within MMJJ_RS03535at 662.428 kb on + strand, within MMJJ_RS03535at 662.434 kb on + strand, within MMJJ_RS03535at 662.551 kb on - strand, within MMJJ_RS03535at 662.678 kb on - strand, within MMJJ_RS03535at 662.711 kb on - strand, within MMJJ_RS03535at 662.734 kb on - strand, within MMJJ_RS03535at 662.769 kb on - strand, within MMJJ_RS03535at 662.803 kb on + strand, within MMJJ_RS03535at 662.855 kb on - strand, within MMJJ_RS03535at 662.871 kb on + strand, within MMJJ_RS03535at 662.893 kb on + strandat 662.909 kb on - strandat 662.909 kb on - strandat 662.910 kb on + strandat 662.911 kb on - strandat 662.911 kb on - strandat 662.931 kb on - strandat 662.934 kb on - strandat 662.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Ticarcillin 12.5 mM
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660,149 - MMJJ_RS03525 0.16 +0.6
660,175 - MMJJ_RS03525 0.18 -2.8
660,276 + MMJJ_RS03525 0.27 +0.5
660,276 + MMJJ_RS03525 0.27 +2.1
660,334 - MMJJ_RS03525 0.32 -1.2
660,334 - MMJJ_RS03525 0.32 -1.4
660,334 - MMJJ_RS03525 0.32 -3.8
660,335 + MMJJ_RS03525 0.33 +0.1
660,335 + MMJJ_RS03525 0.33 -3.3
660,343 - MMJJ_RS03525 0.33 -0.7
660,344 + MMJJ_RS03525 0.33 -1.5
660,410 + MMJJ_RS03525 0.39 +0.3
660,437 - MMJJ_RS03525 0.42 +3.4
660,481 - MMJJ_RS03525 0.46 -2.1
660,481 - MMJJ_RS03525 0.46 -1.7
660,482 + MMJJ_RS03525 0.46 +1.6
660,511 - MMJJ_RS03525 0.48 -1.9
660,512 + MMJJ_RS03525 0.48 -2.4
660,573 - MMJJ_RS03525 0.54 -3.0
660,573 - MMJJ_RS03525 0.54 -2.8
660,586 - MMJJ_RS03525 0.55 -0.9
660,586 - MMJJ_RS03525 0.55 -0.3
660,586 - MMJJ_RS03525 0.55 +1.0
660,586 - MMJJ_RS03525 0.55 +1.3
660,587 + MMJJ_RS03525 0.55 +0.4
660,641 - MMJJ_RS03525 0.60 +0.3
660,658 + MMJJ_RS03525 0.61 +0.6
660,734 - MMJJ_RS03525 0.68 +1.4
660,745 - MMJJ_RS03525 0.69 +1.0
660,745 - MMJJ_RS03525 0.69 +1.4
660,792 - MMJJ_RS03525 0.73 +2.5
660,898 - MMJJ_RS03525 0.83 -1.4
660,898 - MMJJ_RS03525 0.83 +3.8
660,926 + MMJJ_RS03525 0.85 +2.3
660,926 + MMJJ_RS03525 0.85 +0.9
660,926 + MMJJ_RS03525 0.85 -0.9
660,926 + MMJJ_RS03525 0.85 -0.1
660,927 - MMJJ_RS03525 0.85 +0.4
660,930 - MMJJ_RS03525 0.86 -0.8
661,055 + +1.2
661,115 - +0.8
661,239 + MMJJ_RS03530 0.13 -1.1
661,262 + MMJJ_RS03530 0.15 -2.5
661,265 + MMJJ_RS03530 0.16 +4.0
661,293 - MMJJ_RS03530 0.19 -2.0
661,293 - MMJJ_RS03530 0.19 -1.3
661,294 + MMJJ_RS03530 0.19 +3.9
661,295 - MMJJ_RS03530 0.19 +0.6
661,296 + MMJJ_RS03530 0.20 +1.6
661,296 + MMJJ_RS03530 0.20 +1.0
661,307 - MMJJ_RS03530 0.21 -1.2
661,308 + MMJJ_RS03530 0.21 -1.3
661,308 + MMJJ_RS03530 0.21 +3.2
661,310 - MMJJ_RS03530 0.21 +1.7
661,322 + MMJJ_RS03530 0.23 +0.0
661,356 + MMJJ_RS03530 0.27 -0.2
661,406 + MMJJ_RS03530 0.33 +2.2
661,429 + MMJJ_RS03530 0.36 +1.0
661,436 - MMJJ_RS03530 0.36 -0.2
661,440 + MMJJ_RS03530 0.37 +0.6
661,511 - MMJJ_RS03530 0.46 +2.0
661,512 + MMJJ_RS03530 0.46 -0.5
661,512 + MMJJ_RS03530 0.46 +1.9
661,534 + MMJJ_RS03530 0.48 +0.6
661,550 - MMJJ_RS03530 0.50 -2.1
661,580 - MMJJ_RS03530 0.54 +0.3
661,580 - MMJJ_RS03530 0.54 -1.3
661,580 - MMJJ_RS03530 0.54 -1.7
661,585 - MMJJ_RS03530 0.54 -1.6
661,585 - MMJJ_RS03530 0.54 -1.3
661,585 - MMJJ_RS03530 0.54 +2.3
661,585 - MMJJ_RS03530 0.54 +2.6
661,585 - MMJJ_RS03530 0.54 -0.7
661,586 + MMJJ_RS03530 0.55 -1.6
661,586 + MMJJ_RS03530 0.55 +0.2
661,586 + MMJJ_RS03530 0.55 -3.5
661,586 + MMJJ_RS03530 0.55 -2.0
661,586 + MMJJ_RS03530 0.55 +2.8
661,591 - MMJJ_RS03530 0.55 +1.3
661,591 - MMJJ_RS03530 0.55 -3.1
661,591 - MMJJ_RS03530 0.55 -0.0
661,591 - MMJJ_RS03530 0.55 -0.3
661,591 - MMJJ_RS03530 0.55 -1.1
661,592 + MMJJ_RS03530 0.55 +2.3
661,592 + MMJJ_RS03530 0.55 +3.4
661,592 + MMJJ_RS03530 0.55 +4.3
661,616 - MMJJ_RS03530 0.58 +2.7
661,617 + MMJJ_RS03530 0.58 +3.0
661,617 + MMJJ_RS03530 0.58 -1.7
661,625 - MMJJ_RS03530 0.59 +0.3
661,625 - MMJJ_RS03530 0.59 +3.5
661,738 + MMJJ_RS03530 0.73 +2.0
661,747 - MMJJ_RS03530 0.74 +0.3
661,772 - MMJJ_RS03530 0.77 +0.1
661,772 - MMJJ_RS03530 0.77 +1.3
661,777 - MMJJ_RS03530 0.78 +1.0
661,792 - MMJJ_RS03530 0.79 -2.3
661,792 - MMJJ_RS03530 0.79 +3.4
661,792 - MMJJ_RS03530 0.79 -0.2
661,814 - MMJJ_RS03530 0.82 +0.4
661,827 - MMJJ_RS03530 0.84 +2.0
661,828 + MMJJ_RS03530 0.84 +1.5
661,828 + MMJJ_RS03530 0.84 -0.7
661,829 - MMJJ_RS03530 0.84 +2.7
661,830 + MMJJ_RS03530 0.84 +0.3
661,830 + MMJJ_RS03530 0.84 -0.2
661,835 + MMJJ_RS03530 0.85 -1.6
661,856 - MMJJ_RS03530 0.87 +1.3
661,954 - -2.7
661,955 + +0.8
661,974 - -2.4
661,993 - +0.4
661,994 + -1.8
661,996 - -4.1
661,997 + +0.2
661,997 + +0.6
661,997 + -2.4
661,997 + -0.4
662,000 - +1.4
662,000 - -0.7
662,001 + -0.6
662,025 - +2.0
662,061 + +0.9
662,065 - -0.7
662,090 + -0.3
662,090 + +5.8
662,091 - +2.1
662,092 + -1.5
662,092 + -1.6
662,092 + +2.7
662,095 + -4.4
662,100 - +0.6
662,132 - +2.3
662,132 - -1.9
662,132 - +2.3
662,147 - -3.8
662,169 - -1.9
662,236 - MMJJ_RS03535 0.16 -1.1
662,236 - MMJJ_RS03535 0.16 +0.3
662,237 + MMJJ_RS03535 0.16 -0.8
662,238 - MMJJ_RS03535 0.16 +1.6
662,239 + MMJJ_RS03535 0.16 +1.1
662,239 + MMJJ_RS03535 0.16 -2.9
662,244 - MMJJ_RS03535 0.17 -1.1
662,244 - MMJJ_RS03535 0.17 +2.1
662,252 + MMJJ_RS03535 0.18 +1.8
662,318 - MMJJ_RS03535 0.25 +2.2
662,319 + MMJJ_RS03535 0.25 -0.7
662,319 + MMJJ_RS03535 0.25 -2.9
662,319 + MMJJ_RS03535 0.25 -3.4
662,323 + MMJJ_RS03535 0.26 +0.7
662,348 - MMJJ_RS03535 0.29 -0.4
662,348 - MMJJ_RS03535 0.29 +0.5
662,348 - MMJJ_RS03535 0.29 -2.6
662,348 - MMJJ_RS03535 0.29 +0.6
662,349 + MMJJ_RS03535 0.29 +3.0
662,349 + MMJJ_RS03535 0.29 -1.9
662,350 - MMJJ_RS03535 0.29 +1.4
662,350 - MMJJ_RS03535 0.29 -2.7
662,350 - MMJJ_RS03535 0.29 +3.5
662,350 - MMJJ_RS03535 0.29 -2.1
662,351 + MMJJ_RS03535 0.29 +1.1
662,351 + MMJJ_RS03535 0.29 -2.1
662,351 + MMJJ_RS03535 0.29 -1.7
662,359 - MMJJ_RS03535 0.30 +0.8
662,387 + MMJJ_RS03535 0.33 -0.9
662,428 + MMJJ_RS03535 0.38 +0.9
662,434 + MMJJ_RS03535 0.39 +1.4
662,551 - MMJJ_RS03535 0.52 -0.7
662,678 - MMJJ_RS03535 0.66 -1.8
662,711 - MMJJ_RS03535 0.70 +3.1
662,734 - MMJJ_RS03535 0.73 +1.9
662,769 - MMJJ_RS03535 0.77 +3.1
662,803 + MMJJ_RS03535 0.81 +3.1
662,855 - MMJJ_RS03535 0.86 -3.8
662,871 + MMJJ_RS03535 0.88 +1.6
662,893 + -2.3
662,909 - +0.7
662,909 - +1.2
662,910 + +2.1
662,911 - +0.3
662,911 - -2.4
662,931 - -2.9
662,934 - -1.4
662,952 + +1.2

Or see this region's nucleotide sequence