Experiment: McCas_formate_complete Ticarcillin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03290 and MMJJ_RS03295 are separated by 28 nucleotides MMJJ_RS03295 and MMJJ_RS03300 are separated by 5 nucleotides
MMJJ_RS03290: MMJJ_RS03290 - amidohydrolase, at 622,964 to 624,244
_RS03290
MMJJ_RS03295: MMJJ_RS03295 - PHP domain-containing protein, at 624,273 to 624,917
_RS03295
MMJJ_RS03300: MMJJ_RS03300 - RNA ligase, at 624,923 to 626,107
_RS03300
Position (kb) 624
625
626
627 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 623.940 kb on - strand, within MMJJ_RS03290 at 623.940 kb on - strand, within MMJJ_RS03290 at 623.944 kb on - strand, within MMJJ_RS03290 at 623.945 kb on + strand, within MMJJ_RS03290 at 624.010 kb on - strand, within MMJJ_RS03290 at 624.038 kb on + strand, within MMJJ_RS03290 at 624.040 kb on - strand, within MMJJ_RS03290 at 624.070 kb on + strand, within MMJJ_RS03290 at 624.082 kb on - strand, within MMJJ_RS03290 at 624.085 kb on - strand, within MMJJ_RS03290 at 624.087 kb on - strand, within MMJJ_RS03290 at 624.102 kb on - strand, within MMJJ_RS03290 at 624.102 kb on - strand, within MMJJ_RS03290 at 624.102 kb on - strand, within MMJJ_RS03290 at 624.103 kb on + strand, within MMJJ_RS03290 at 624.103 kb on + strand, within MMJJ_RS03290 at 624.103 kb on + strand, within MMJJ_RS03290 at 624.135 kb on - strand at 624.138 kb on - strand at 624.151 kb on - strand at 624.151 kb on - strand at 624.151 kb on - strand at 624.152 kb on + strand at 624.195 kb on - strand at 624.195 kb on - strand at 624.195 kb on - strand at 624.196 kb on + strand at 624.196 kb on + strand at 624.199 kb on - strand at 624.199 kb on - strand at 624.199 kb on - strand at 624.200 kb on + strand at 624.202 kb on - strand at 624.214 kb on - strand at 624.214 kb on - strand at 624.214 kb on - strand at 624.215 kb on + strand at 624.295 kb on - strand at 624.295 kb on - strand at 624.295 kb on - strand at 624.295 kb on - strand at 624.296 kb on + strand at 624.419 kb on + strand, within MMJJ_RS03295 at 624.496 kb on - strand, within MMJJ_RS03295 at 624.540 kb on - strand, within MMJJ_RS03295 at 624.541 kb on + strand, within MMJJ_RS03295 at 624.584 kb on - strand, within MMJJ_RS03295 at 624.584 kb on - strand, within MMJJ_RS03295 at 624.616 kb on - strand, within MMJJ_RS03295 at 624.617 kb on + strand, within MMJJ_RS03295 at 624.631 kb on - strand, within MMJJ_RS03295 at 624.631 kb on - strand, within MMJJ_RS03295 at 624.631 kb on - strand, within MMJJ_RS03295 at 624.632 kb on + strand, within MMJJ_RS03295 at 624.632 kb on + strand, within MMJJ_RS03295 at 624.632 kb on + strand, within MMJJ_RS03295 at 624.640 kb on - strand, within MMJJ_RS03295 at 624.641 kb on + strand, within MMJJ_RS03295 at 624.641 kb on + strand, within MMJJ_RS03295 at 624.641 kb on + strand, within MMJJ_RS03295 at 624.641 kb on + strand, within MMJJ_RS03295 at 624.641 kb on + strand, within MMJJ_RS03295 at 624.642 kb on - strand, within MMJJ_RS03295 at 624.642 kb on - strand, within MMJJ_RS03295 at 624.643 kb on + strand, within MMJJ_RS03295 at 624.643 kb on + strand, within MMJJ_RS03295 at 624.644 kb on - strand, within MMJJ_RS03295 at 624.684 kb on - strand, within MMJJ_RS03295 at 624.685 kb on + strand, within MMJJ_RS03295 at 624.701 kb on - strand, within MMJJ_RS03295 at 624.702 kb on + strand, within MMJJ_RS03295 at 624.752 kb on + strand, within MMJJ_RS03295 at 624.762 kb on - strand, within MMJJ_RS03295 at 624.787 kb on - strand, within MMJJ_RS03295 at 624.788 kb on + strand, within MMJJ_RS03295 at 624.792 kb on + strand, within MMJJ_RS03295 at 624.844 kb on + strand, within MMJJ_RS03295 at 624.844 kb on + strand, within MMJJ_RS03295 at 624.877 kb on - strand at 624.877 kb on - strand at 624.877 kb on - strand at 624.877 kb on - strand at 624.877 kb on - strand at 624.878 kb on + strand at 624.878 kb on + strand at 624.878 kb on + strand at 624.878 kb on + strand at 624.878 kb on + strand at 624.884 kb on - strand at 624.885 kb on + strand at 624.910 kb on - strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.949 kb on - strand at 624.975 kb on - strand at 624.976 kb on + strand at 625.046 kb on + strand, within MMJJ_RS03300 at 625.144 kb on - strand, within MMJJ_RS03300 at 625.147 kb on - strand, within MMJJ_RS03300 at 625.203 kb on + strand, within MMJJ_RS03300 at 625.244 kb on - strand, within MMJJ_RS03300 at 625.251 kb on - strand, within MMJJ_RS03300 at 625.321 kb on - strand, within MMJJ_RS03300 at 625.322 kb on + strand, within MMJJ_RS03300 at 625.343 kb on + strand, within MMJJ_RS03300 at 625.346 kb on + strand, within MMJJ_RS03300 at 625.375 kb on + strand, within MMJJ_RS03300 at 625.402 kb on + strand, within MMJJ_RS03300 at 625.413 kb on + strand, within MMJJ_RS03300 at 625.424 kb on - strand, within MMJJ_RS03300 at 625.424 kb on - strand, within MMJJ_RS03300 at 625.424 kb on - strand, within MMJJ_RS03300 at 625.427 kb on - strand, within MMJJ_RS03300 at 625.448 kb on - strand, within MMJJ_RS03300 at 625.448 kb on - strand, within MMJJ_RS03300 at 625.449 kb on + strand, within MMJJ_RS03300 at 625.487 kb on + strand, within MMJJ_RS03300 at 625.495 kb on - strand, within MMJJ_RS03300 at 625.512 kb on - strand, within MMJJ_RS03300 at 625.514 kb on - strand, within MMJJ_RS03300 at 625.514 kb on - strand, within MMJJ_RS03300 at 625.514 kb on - strand, within MMJJ_RS03300 at 625.515 kb on + strand, within MMJJ_RS03300 at 625.515 kb on + strand, within MMJJ_RS03300 at 625.547 kb on + strand, within MMJJ_RS03300 at 625.558 kb on + strand, within MMJJ_RS03300 at 625.582 kb on - strand, within MMJJ_RS03300 at 625.620 kb on - strand, within MMJJ_RS03300 at 625.644 kb on - strand, within MMJJ_RS03300 at 625.644 kb on - strand, within MMJJ_RS03300 at 625.686 kb on + strand, within MMJJ_RS03300 at 625.733 kb on - strand, within MMJJ_RS03300 at 625.776 kb on - strand, within MMJJ_RS03300 at 625.882 kb on + strand, within MMJJ_RS03300 at 625.960 kb on - strand, within MMJJ_RS03300 at 625.967 kb on - strand, within MMJJ_RS03300 at 625.967 kb on - strand, within MMJJ_RS03300 at 625.978 kb on - strand, within MMJJ_RS03300 at 625.978 kb on - strand, within MMJJ_RS03300 at 625.978 kb on - strand, within MMJJ_RS03300 at 625.978 kb on - strand, within MMJJ_RS03300 at 625.979 kb on + strand, within MMJJ_RS03300 at 625.984 kb on - strand, within MMJJ_RS03300 at 625.984 kb on - strand, within MMJJ_RS03300 at 625.984 kb on - strand, within MMJJ_RS03300 at 625.985 kb on + strand, within MMJJ_RS03300 at 625.985 kb on + strand, within MMJJ_RS03300 at 626.013 kb on + strand at 626.015 kb on + strand at 626.018 kb on + strand at 626.026 kb on - strand at 626.028 kb on - strand at 626.028 kb on - strand at 626.028 kb on - strand at 626.029 kb on + strand at 626.029 kb on + strand at 626.029 kb on + strand at 626.033 kb on + strand at 626.033 kb on + strand at 626.033 kb on + strand at 626.033 kb on + strand at 626.048 kb on + strand at 626.055 kb on + strand at 626.055 kb on + strand at 626.072 kb on + strand at 626.105 kb on - strand at 626.122 kb on + strand at 626.133 kb on - strand at 626.147 kb on + strand at 626.150 kb on - strand at 626.150 kb on - strand at 626.150 kb on - strand at 626.151 kb on + strand at 626.151 kb on + strand at 626.152 kb on - strand at 626.152 kb on - strand at 626.153 kb on + strand at 626.154 kb on - strand at 626.154 kb on - strand at 626.154 kb on - strand at 626.154 kb on - strand at 626.154 kb on - strand at 626.155 kb on + strand at 626.155 kb on + strand at 626.155 kb on + strand at 626.155 kb on + strand at 626.155 kb on + strand at 626.155 kb on + strand at 626.155 kb on + strand at 626.159 kb on + strand at 626.167 kb on - strand at 626.167 kb on - strand at 626.167 kb on - strand at 626.167 kb on - strand at 626.167 kb on - strand at 626.168 kb on + strand at 626.168 kb on + strand at 626.168 kb on + strand at 626.168 kb on + strand at 626.168 kb on + strand at 626.168 kb on + strand at 626.168 kb on + strand at 626.168 kb on + strand at 626.171 kb on - strand at 626.171 kb on - strand at 626.172 kb on + strand at 626.172 kb on + strand at 626.172 kb on + strand at 626.172 kb on + strand at 626.172 kb on + strand at 626.198 kb on - strand at 626.226 kb on + strand at 626.226 kb on + strand at 626.252 kb on - strand at 626.252 kb on - strand at 626.254 kb on - strand at 626.254 kb on - strand at 626.254 kb on - strand at 626.254 kb on - strand at 626.284 kb on - strand at 626.314 kb on - strand at 626.315 kb on + strand at 626.315 kb on + strand at 626.333 kb on - strand at 626.334 kb on + strand at 626.369 kb on - strand at 626.373 kb on - strand at 626.386 kb on - strand at 626.397 kb on + strand at 626.408 kb on - strand at 626.431 kb on - strand at 626.431 kb on - strand at 626.443 kb on - strand at 626.449 kb on - strand at 626.450 kb on + strand at 626.450 kb on + strand at 626.454 kb on + strand at 626.455 kb on - strand at 626.455 kb on - strand at 626.456 kb on + strand at 626.456 kb on + strand at 626.460 kb on - strand at 626.460 kb on - strand at 626.460 kb on - strand at 626.460 kb on - strand at 626.461 kb on + strand at 626.461 kb on + strand at 626.466 kb on + strand at 626.466 kb on + strand at 626.468 kb on - strand at 626.475 kb on + strand at 626.513 kb on - strand at 626.517 kb on - strand at 626.530 kb on - strand at 626.530 kb on - strand at 626.531 kb on + strand at 626.626 kb on - strand at 626.688 kb on + strand at 626.688 kb on + strand at 626.688 kb on + strand at 626.688 kb on + strand at 626.713 kb on - strand at 626.714 kb on + strand at 626.714 kb on + strand at 626.720 kb on - strand at 626.721 kb on + strand at 626.750 kb on - strand at 626.751 kb on + strand at 626.754 kb on + strand at 626.754 kb on + strand at 626.756 kb on - strand at 626.756 kb on - strand at 626.758 kb on - strand at 626.758 kb on - strand at 626.758 kb on - strand at 626.759 kb on + strand at 626.759 kb on + strand at 626.759 kb on + strand at 626.811 kb on - strand at 626.812 kb on + strand at 626.836 kb on - strand at 626.924 kb on + strand at 626.929 kb on + strand at 627.025 kb on + strand at 627.054 kb on + strand at 627.083 kb on - strand at 627.084 kb on + strand at 627.084 kb on + strand at 627.084 kb on + strand at 627.084 kb on + strand at 627.084 kb on + strand at 627.084 kb on + strand at 627.085 kb on - strand at 627.086 kb on + strand at 627.086 kb on + strand at 627.086 kb on + strand at 627.088 kb on + strand at 627.102 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Ticarcillin 12.5 mM remove 623,940 - MMJJ_RS03290 0.76 +1.2 623,940 - MMJJ_RS03290 0.76 +0.8 623,944 - MMJJ_RS03290 0.77 +0.2 623,945 + MMJJ_RS03290 0.77 +2.2 624,010 - MMJJ_RS03290 0.82 -2.0 624,038 + MMJJ_RS03290 0.84 +2.0 624,040 - MMJJ_RS03290 0.84 +2.4 624,070 + MMJJ_RS03290 0.86 -0.5 624,082 - MMJJ_RS03290 0.87 +2.5 624,085 - MMJJ_RS03290 0.88 +2.0 624,087 - MMJJ_RS03290 0.88 +1.2 624,102 - MMJJ_RS03290 0.89 -0.7 624,102 - MMJJ_RS03290 0.89 -0.7 624,102 - MMJJ_RS03290 0.89 +0.3 624,103 + MMJJ_RS03290 0.89 +1.9 624,103 + MMJJ_RS03290 0.89 +0.5 624,103 + MMJJ_RS03290 0.89 -0.3 624,135 - +2.2 624,138 - +1.7 624,151 - -3.2 624,151 - +2.3 624,151 - -2.7 624,152 + -3.1 624,195 - -1.2 624,195 - -0.6 624,195 - -0.5 624,196 + +1.5 624,196 + +1.5 624,199 - +1.9 624,199 - -0.0 624,199 - -3.6 624,200 + +1.1 624,202 - +3.5 624,214 - -0.4 624,214 - -2.4 624,214 - +0.2 624,215 + +0.2 624,295 - +3.0 624,295 - +1.1 624,295 - +0.1 624,295 - -2.5 624,296 + -0.8 624,419 + MMJJ_RS03295 0.23 +1.6 624,496 - MMJJ_RS03295 0.35 +1.5 624,540 - MMJJ_RS03295 0.41 -3.0 624,541 + MMJJ_RS03295 0.42 +1.8 624,584 - MMJJ_RS03295 0.48 -0.7 624,584 - MMJJ_RS03295 0.48 -1.8 624,616 - MMJJ_RS03295 0.53 +0.3 624,617 + MMJJ_RS03295 0.53 +0.5 624,631 - MMJJ_RS03295 0.56 +0.1 624,631 - MMJJ_RS03295 0.56 -1.5 624,631 - MMJJ_RS03295 0.56 +0.8 624,632 + MMJJ_RS03295 0.56 -1.6 624,632 + MMJJ_RS03295 0.56 -0.7 624,632 + MMJJ_RS03295 0.56 +0.2 624,640 - MMJJ_RS03295 0.57 -1.4 624,641 + MMJJ_RS03295 0.57 -0.7 624,641 + MMJJ_RS03295 0.57 -0.6 624,641 + MMJJ_RS03295 0.57 -3.2 624,641 + MMJJ_RS03295 0.57 -0.7 624,641 + MMJJ_RS03295 0.57 -1.0 624,642 - MMJJ_RS03295 0.57 -0.7 624,642 - MMJJ_RS03295 0.57 +0.6 624,643 + MMJJ_RS03295 0.57 -0.2 624,643 + MMJJ_RS03295 0.57 +2.1 624,644 - MMJJ_RS03295 0.58 -0.3 624,684 - MMJJ_RS03295 0.64 -3.1 624,685 + MMJJ_RS03295 0.64 -1.6 624,701 - MMJJ_RS03295 0.66 +1.7 624,702 + MMJJ_RS03295 0.67 -1.0 624,752 + MMJJ_RS03295 0.74 -2.2 624,762 - MMJJ_RS03295 0.76 -1.9 624,787 - MMJJ_RS03295 0.80 -0.9 624,788 + MMJJ_RS03295 0.80 +2.2 624,792 + MMJJ_RS03295 0.80 +0.4 624,844 + MMJJ_RS03295 0.89 -1.5 624,844 + MMJJ_RS03295 0.89 -3.5 624,877 - +1.0 624,877 - -0.4 624,877 - +0.1 624,877 - -1.1 624,877 - -0.8 624,878 + +0.5 624,878 + -3.5 624,878 + +3.5 624,878 + -1.9 624,878 + +0.7 624,884 - -2.7 624,885 + -0.1 624,910 - -2.6 624,936 + +0.4 624,936 + -1.0 624,949 - +0.5 624,975 - -2.4 624,976 + +2.2 625,046 + MMJJ_RS03300 0.10 +1.2 625,144 - MMJJ_RS03300 0.19 +0.3 625,147 - MMJJ_RS03300 0.19 -0.3 625,203 + MMJJ_RS03300 0.24 +0.4 625,244 - MMJJ_RS03300 0.27 +0.9 625,251 - MMJJ_RS03300 0.28 +0.0 625,321 - MMJJ_RS03300 0.34 -4.2 625,322 + MMJJ_RS03300 0.34 -2.7 625,343 + MMJJ_RS03300 0.35 +3.8 625,346 + MMJJ_RS03300 0.36 +2.4 625,375 + MMJJ_RS03300 0.38 -1.0 625,402 + MMJJ_RS03300 0.40 -1.6 625,413 + MMJJ_RS03300 0.41 -2.4 625,424 - MMJJ_RS03300 0.42 +1.5 625,424 - MMJJ_RS03300 0.42 +0.2 625,424 - MMJJ_RS03300 0.42 +2.2 625,427 - MMJJ_RS03300 0.43 -0.3 625,448 - MMJJ_RS03300 0.44 -2.4 625,448 - MMJJ_RS03300 0.44 +1.0 625,449 + MMJJ_RS03300 0.44 +1.2 625,487 + MMJJ_RS03300 0.48 +3.5 625,495 - MMJJ_RS03300 0.48 -0.7 625,512 - MMJJ_RS03300 0.50 -1.3 625,514 - MMJJ_RS03300 0.50 -0.3 625,514 - MMJJ_RS03300 0.50 +1.4 625,514 - MMJJ_RS03300 0.50 +1.1 625,515 + MMJJ_RS03300 0.50 +2.8 625,515 + MMJJ_RS03300 0.50 +3.3 625,547 + MMJJ_RS03300 0.53 -3.6 625,558 + MMJJ_RS03300 0.54 -3.1 625,582 - MMJJ_RS03300 0.56 -1.9 625,620 - MMJJ_RS03300 0.59 +1.1 625,644 - MMJJ_RS03300 0.61 +0.5 625,644 - MMJJ_RS03300 0.61 -2.3 625,686 + MMJJ_RS03300 0.64 -0.5 625,733 - MMJJ_RS03300 0.68 +2.5 625,776 - MMJJ_RS03300 0.72 +1.0 625,882 + MMJJ_RS03300 0.81 +2.9 625,960 - MMJJ_RS03300 0.88 -0.0 625,967 - MMJJ_RS03300 0.88 -2.8 625,967 - MMJJ_RS03300 0.88 +3.0 625,978 - MMJJ_RS03300 0.89 +0.2 625,978 - MMJJ_RS03300 0.89 +5.7 625,978 - MMJJ_RS03300 0.89 -0.5 625,978 - MMJJ_RS03300 0.89 +2.4 625,979 + MMJJ_RS03300 0.89 -1.9 625,984 - MMJJ_RS03300 0.90 -3.4 625,984 - MMJJ_RS03300 0.90 -0.9 625,984 - MMJJ_RS03300 0.90 -4.2 625,985 + MMJJ_RS03300 0.90 -0.2 625,985 + MMJJ_RS03300 0.90 +2.2 626,013 + -1.4 626,015 + -1.6 626,018 + -4.5 626,026 - +4.1 626,028 - +2.3 626,028 - +2.7 626,028 - -3.7 626,029 + +0.8 626,029 + -0.2 626,029 + +1.4 626,033 + -3.3 626,033 + -1.8 626,033 + -2.6 626,033 + -0.1 626,048 + +0.7 626,055 + -1.9 626,055 + -3.7 626,072 + -2.3 626,105 - +0.5 626,122 + -2.1 626,133 - +0.8 626,147 + +0.0 626,150 - +1.4 626,150 - -0.6 626,150 - +3.1 626,151 + +1.0 626,151 + -0.5 626,152 - +0.3 626,152 - -1.9 626,153 + -3.1 626,154 - -1.0 626,154 - +3.1 626,154 - -1.7 626,154 - -0.1 626,154 - -0.4 626,155 + +2.9 626,155 + +0.5 626,155 + -1.2 626,155 + +0.7 626,155 + +2.1 626,155 + +0.9 626,155 + -0.3 626,159 + +1.2 626,167 - -3.1 626,167 - +2.9 626,167 - +0.9 626,167 - +1.6 626,167 - +2.4 626,168 + -1.9 626,168 + -2.3 626,168 + -2.7 626,168 + -3.1 626,168 + +2.6 626,168 + -2.9 626,168 + -1.5 626,168 + +2.2 626,171 - -1.9 626,171 - +0.5 626,172 + -0.1 626,172 + -2.6 626,172 + +1.0 626,172 + -3.0 626,172 + -1.0 626,198 - +4.0 626,226 + +0.5 626,226 + -1.3 626,252 - -0.3 626,252 - +0.3 626,254 - -2.8 626,254 - +3.7 626,254 - -0.3 626,254 - -2.0 626,284 - +1.2 626,314 - -3.1 626,315 + +0.8 626,315 + +0.1 626,333 - +2.5 626,334 + -3.9 626,369 - +1.1 626,373 - -0.9 626,386 - -0.5 626,397 + +4.3 626,408 - -1.4 626,431 - -0.1 626,431 - +0.1 626,443 - +1.6 626,449 - +0.2 626,450 + -1.9 626,450 + +2.4 626,454 + +1.7 626,455 - -2.0 626,455 - -2.3 626,456 + +1.1 626,456 + -1.5 626,460 - +2.8 626,460 - +0.4 626,460 - -2.3 626,460 - +1.8 626,461 + +0.5 626,461 + -4.0 626,466 + +1.5 626,466 + -2.5 626,468 - +2.2 626,475 + -1.7 626,513 - -1.6 626,517 - -2.6 626,530 - -0.1 626,530 - +1.6 626,531 + -2.4 626,626 - -2.4 626,688 + +0.5 626,688 + +1.5 626,688 + +1.6 626,688 + -2.3 626,713 - -1.7 626,714 + +1.2 626,714 + +0.3 626,720 - +0.9 626,721 + +1.3 626,750 - -0.0 626,751 + -1.7 626,754 + +2.1 626,754 + -1.6 626,756 - +2.1 626,756 - +0.4 626,758 - +0.9 626,758 - +0.9 626,758 - -0.1 626,759 + -2.0 626,759 + +0.5 626,759 + +1.9 626,811 - +1.4 626,812 + +1.5 626,836 - -2.2 626,924 + -0.0 626,929 + -0.6 627,025 + +1.9 627,054 + +0.3 627,083 - +1.6 627,084 + +1.1 627,084 + -2.5 627,084 + +2.3 627,084 + +1.2 627,084 + -0.5 627,084 + +3.9 627,085 - +0.1 627,086 + -0.9 627,086 + +2.7 627,086 + -1.1 627,088 + +2.0 627,102 + -0.1
Or see this region's nucleotide sequence