Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01790

Experiment: McCas_formate_complete Ticarcillin 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01775 and MMJJ_RS01780 are separated by 9 nucleotidesMMJJ_RS01780 and MMJJ_RS01785 are separated by 82 nucleotidesMMJJ_RS01785 and MMJJ_RS01790 are separated by 119 nucleotidesMMJJ_RS01790 and MMJJ_RS01795 are separated by 63 nucleotidesMMJJ_RS01795 and MMJJ_RS01800 are separated by 64 nucleotides MMJJ_RS01775: MMJJ_RS01775 - 50S ribosomal protein L34e, at 343,075 to 343,344 _RS01775 MMJJ_RS01780: MMJJ_RS01780 - AAA family ATPase, at 343,354 to 343,890 _RS01780 MMJJ_RS01785: MMJJ_RS01785 - 50S ribosomal protein L14e, at 343,973 to 344,206 _RS01785 MMJJ_RS01790: MMJJ_RS01790 - pyridoxamine 5'-phosphate oxidase family protein, at 344,326 to 344,727 _RS01790 MMJJ_RS01795: MMJJ_RS01795 - TIGR00266 family protein, at 344,791 to 345,459 _RS01795 MMJJ_RS01800: MMJJ_RS01800 - ADP-ribosylglycohydrolase family protein, at 345,524 to 346,432 _RS01800 Position (kb) 344 345Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 343.452 kb on - strand, within MMJJ_RS01780at 344.173 kb on - strand, within MMJJ_RS01785at 344.185 kb on + strandat 344.200 kb on + strandat 344.200 kb on + strandat 344.202 kb on - strandat 344.203 kb on + strandat 344.203 kb on + strandat 344.205 kb on + strandat 344.233 kb on - strandat 344.254 kb on - strandat 344.255 kb on + strandat 344.280 kb on + strandat 344.283 kb on + strandat 344.345 kb on + strandat 344.372 kb on + strand, within MMJJ_RS01790at 344.372 kb on + strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.380 kb on - strand, within MMJJ_RS01790at 344.380 kb on - strand, within MMJJ_RS01790at 344.381 kb on + strand, within MMJJ_RS01790at 344.381 kb on + strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.443 kb on - strand, within MMJJ_RS01790at 344.466 kb on + strand, within MMJJ_RS01790at 344.537 kb on + strand, within MMJJ_RS01790at 344.641 kb on - strand, within MMJJ_RS01790at 344.681 kb on + strand, within MMJJ_RS01790at 344.717 kb on + strandat 344.729 kb on - strandat 344.729 kb on - strandat 344.729 kb on - strandat 344.730 kb on + strandat 344.730 kb on + strandat 344.788 kb on - strandat 344.788 kb on - strandat 344.789 kb on + strandat 344.848 kb on + strandat 344.865 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.957 kb on + strand, within MMJJ_RS01795at 345.014 kb on + strand, within MMJJ_RS01795at 345.112 kb on + strand, within MMJJ_RS01795at 345.157 kb on - strand, within MMJJ_RS01795at 345.180 kb on + strand, within MMJJ_RS01795at 345.180 kb on + strand, within MMJJ_RS01795at 345.182 kb on + strand, within MMJJ_RS01795at 345.210 kb on - strand, within MMJJ_RS01795at 345.211 kb on + strand, within MMJJ_RS01795at 345.256 kb on - strand, within MMJJ_RS01795at 345.261 kb on - strand, within MMJJ_RS01795at 345.271 kb on - strand, within MMJJ_RS01795at 345.307 kb on - strand, within MMJJ_RS01795at 345.340 kb on - strand, within MMJJ_RS01795at 345.340 kb on - strand, within MMJJ_RS01795at 345.341 kb on + strand, within MMJJ_RS01795at 345.341 kb on + strand, within MMJJ_RS01795at 345.349 kb on + strand, within MMJJ_RS01795at 345.349 kb on + strand, within MMJJ_RS01795at 345.354 kb on - strand, within MMJJ_RS01795at 345.383 kb on + strand, within MMJJ_RS01795at 345.420 kb on + strandat 345.474 kb on - strandat 345.475 kb on + strandat 345.482 kb on - strandat 345.482 kb on - strandat 345.484 kb on - strandat 345.485 kb on + strandat 345.485 kb on + strandat 345.492 kb on - strandat 345.501 kb on - strandat 345.507 kb on + strandat 345.508 kb on - strandat 345.509 kb on + strandat 345.509 kb on + strandat 345.511 kb on + strandat 345.511 kb on + strandat 345.511 kb on + strandat 345.522 kb on + strandat 345.533 kb on + strandat 345.572 kb on - strandat 345.630 kb on - strand, within MMJJ_RS01800at 345.630 kb on - strand, within MMJJ_RS01800at 345.631 kb on + strand, within MMJJ_RS01800at 345.631 kb on + strand, within MMJJ_RS01800at 345.651 kb on - strand, within MMJJ_RS01800at 345.651 kb on - strand, within MMJJ_RS01800at 345.651 kb on - strand, within MMJJ_RS01800at 345.651 kb on - strand, within MMJJ_RS01800at 345.652 kb on + strand, within MMJJ_RS01800at 345.652 kb on + strand, within MMJJ_RS01800at 345.652 kb on + strand, within MMJJ_RS01800at 345.689 kb on - strand, within MMJJ_RS01800

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Ticarcillin 12.5 mM
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343,452 - MMJJ_RS01780 0.18 +1.3
344,173 - MMJJ_RS01785 0.85 +1.8
344,185 + -2.2
344,200 + +2.0
344,200 + +0.2
344,202 - -1.1
344,203 + +0.3
344,203 + -1.1
344,205 + -0.5
344,233 - -2.3
344,254 - +1.7
344,255 + -3.9
344,280 + +0.5
344,283 + +2.1
344,345 + -1.8
344,372 + MMJJ_RS01790 0.11 -1.2
344,372 + MMJJ_RS01790 0.11 -2.3
344,378 - MMJJ_RS01790 0.13 +1.0
344,378 - MMJJ_RS01790 0.13 -1.1
344,378 - MMJJ_RS01790 0.13 -1.5
344,379 + MMJJ_RS01790 0.13 +0.6
344,379 + MMJJ_RS01790 0.13 +0.0
344,379 + MMJJ_RS01790 0.13 -1.6
344,379 + MMJJ_RS01790 0.13 -3.6
344,379 + MMJJ_RS01790 0.13 +0.3
344,380 - MMJJ_RS01790 0.13 -1.0
344,380 - MMJJ_RS01790 0.13 +1.5
344,381 + MMJJ_RS01790 0.14 -3.3
344,381 + MMJJ_RS01790 0.14 -3.0
344,382 - MMJJ_RS01790 0.14 -1.6
344,382 - MMJJ_RS01790 0.14 -2.0
344,382 - MMJJ_RS01790 0.14 +0.2
344,382 - MMJJ_RS01790 0.14 +0.3
344,383 + MMJJ_RS01790 0.14 -2.7
344,383 + MMJJ_RS01790 0.14 -3.9
344,383 + MMJJ_RS01790 0.14 +1.1
344,383 + MMJJ_RS01790 0.14 +0.8
344,383 + MMJJ_RS01790 0.14 +1.5
344,383 + MMJJ_RS01790 0.14 -3.8
344,443 - MMJJ_RS01790 0.29 +1.6
344,466 + MMJJ_RS01790 0.35 +0.5
344,537 + MMJJ_RS01790 0.52 -2.8
344,641 - MMJJ_RS01790 0.78 +0.2
344,681 + MMJJ_RS01790 0.88 +3.0
344,717 + -1.3
344,729 - +0.3
344,729 - +0.7
344,729 - -2.8
344,730 + +1.1
344,730 + -4.7
344,788 - -2.7
344,788 - -1.8
344,789 + +0.0
344,848 + +1.3
344,865 + MMJJ_RS01795 0.11 -3.8
344,892 + MMJJ_RS01795 0.15 -2.4
344,892 + MMJJ_RS01795 0.15 +1.0
344,892 + MMJJ_RS01795 0.15 +1.1
344,957 + MMJJ_RS01795 0.25 +2.0
345,014 + MMJJ_RS01795 0.33 +1.2
345,112 + MMJJ_RS01795 0.48 +1.9
345,157 - MMJJ_RS01795 0.55 +2.2
345,180 + MMJJ_RS01795 0.58 +1.5
345,180 + MMJJ_RS01795 0.58 -1.4
345,182 + MMJJ_RS01795 0.58 -0.5
345,210 - MMJJ_RS01795 0.63 -1.5
345,211 + MMJJ_RS01795 0.63 -0.3
345,256 - MMJJ_RS01795 0.70 +0.3
345,261 - MMJJ_RS01795 0.70 +1.0
345,271 - MMJJ_RS01795 0.72 +0.1
345,307 - MMJJ_RS01795 0.77 -1.9
345,340 - MMJJ_RS01795 0.82 +1.6
345,340 - MMJJ_RS01795 0.82 +0.3
345,341 + MMJJ_RS01795 0.82 +1.9
345,341 + MMJJ_RS01795 0.82 -3.3
345,349 + MMJJ_RS01795 0.83 -2.4
345,349 + MMJJ_RS01795 0.83 +1.3
345,354 - MMJJ_RS01795 0.84 +2.8
345,383 + MMJJ_RS01795 0.88 -2.6
345,420 + -3.1
345,474 - +0.9
345,475 + -1.8
345,482 - -2.4
345,482 - +1.7
345,484 - +0.1
345,485 + -0.0
345,485 + -2.0
345,492 - -0.3
345,501 - +0.4
345,507 + -2.4
345,508 - +0.2
345,509 + +0.3
345,509 + -1.5
345,511 + +1.3
345,511 + +1.7
345,511 + -0.0
345,522 + -1.7
345,533 + -2.0
345,572 - -0.8
345,630 - MMJJ_RS01800 0.12 +1.9
345,630 - MMJJ_RS01800 0.12 -2.5
345,631 + MMJJ_RS01800 0.12 -2.6
345,631 + MMJJ_RS01800 0.12 -1.4
345,651 - MMJJ_RS01800 0.14 +1.3
345,651 - MMJJ_RS01800 0.14 +0.4
345,651 - MMJJ_RS01800 0.14 -1.9
345,651 - MMJJ_RS01800 0.14 +2.7
345,652 + MMJJ_RS01800 0.14 +5.1
345,652 + MMJJ_RS01800 0.14 +1.4
345,652 + MMJJ_RS01800 0.14 +1.1
345,689 - MMJJ_RS01800 0.18 +3.0

Or see this region's nucleotide sequence