Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01240

Experiment: McCas_formate_complete Ticarcillin 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01235 and MMJJ_RS01240 are separated by 7 nucleotidesMMJJ_RS01240 and MMJJ_RS01245 overlap by 4 nucleotides MMJJ_RS01235: MMJJ_RS01235 - excinuclease ABC subunit UvrA, at 236,245 to 239,100 _RS01235 MMJJ_RS01240: MMJJ_RS01240 - excinuclease ABC subunit UvrC, at 239,108 to 240,691 _RS01240 MMJJ_RS01245: MMJJ_RS01245 - excinuclease ABC subunit UvrB, at 240,688 to 242,628 _RS01245 Position (kb) 239 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 238.181 kb on - strand, within MMJJ_RS01235at 238.182 kb on + strand, within MMJJ_RS01235at 238.187 kb on + strand, within MMJJ_RS01235at 238.268 kb on + strand, within MMJJ_RS01235at 238.275 kb on - strand, within MMJJ_RS01235at 238.444 kb on - strand, within MMJJ_RS01235at 238.445 kb on + strand, within MMJJ_RS01235at 238.467 kb on - strand, within MMJJ_RS01235at 238.566 kb on - strand, within MMJJ_RS01235at 238.566 kb on - strand, within MMJJ_RS01235at 238.576 kb on + strand, within MMJJ_RS01235at 238.576 kb on + strand, within MMJJ_RS01235at 238.634 kb on - strand, within MMJJ_RS01235at 238.668 kb on - strand, within MMJJ_RS01235at 238.675 kb on + strand, within MMJJ_RS01235at 238.693 kb on + strand, within MMJJ_RS01235at 238.726 kb on - strand, within MMJJ_RS01235at 238.727 kb on + strand, within MMJJ_RS01235at 238.731 kb on - strand, within MMJJ_RS01235at 238.731 kb on - strand, within MMJJ_RS01235at 238.732 kb on + strand, within MMJJ_RS01235at 238.737 kb on + strand, within MMJJ_RS01235at 238.827 kb on + strandat 238.828 kb on - strandat 238.828 kb on - strandat 238.829 kb on + strandat 238.829 kb on + strandat 238.829 kb on + strandat 238.832 kb on - strandat 238.922 kb on - strandat 238.923 kb on + strandat 238.923 kb on + strandat 238.949 kb on - strandat 239.055 kb on + strandat 239.104 kb on - strandat 239.112 kb on - strandat 239.113 kb on + strandat 239.147 kb on - strandat 239.149 kb on - strandat 239.154 kb on + strandat 239.215 kb on - strandat 239.219 kb on + strandat 239.292 kb on - strand, within MMJJ_RS01240at 239.349 kb on + strand, within MMJJ_RS01240at 239.360 kb on - strand, within MMJJ_RS01240at 239.361 kb on + strand, within MMJJ_RS01240at 239.368 kb on + strand, within MMJJ_RS01240at 239.374 kb on + strand, within MMJJ_RS01240at 239.396 kb on - strand, within MMJJ_RS01240at 239.396 kb on - strand, within MMJJ_RS01240at 239.396 kb on - strand, within MMJJ_RS01240at 239.396 kb on - strand, within MMJJ_RS01240at 239.396 kb on - strand, within MMJJ_RS01240at 239.397 kb on + strand, within MMJJ_RS01240at 239.397 kb on + strand, within MMJJ_RS01240at 239.398 kb on - strand, within MMJJ_RS01240at 239.403 kb on + strand, within MMJJ_RS01240at 239.403 kb on + strand, within MMJJ_RS01240at 239.447 kb on + strand, within MMJJ_RS01240at 239.479 kb on - strand, within MMJJ_RS01240at 239.502 kb on + strand, within MMJJ_RS01240at 239.502 kb on + strand, within MMJJ_RS01240at 239.581 kb on - strand, within MMJJ_RS01240at 239.606 kb on + strand, within MMJJ_RS01240at 239.606 kb on + strand, within MMJJ_RS01240at 239.815 kb on + strand, within MMJJ_RS01240at 239.866 kb on - strand, within MMJJ_RS01240at 239.869 kb on + strand, within MMJJ_RS01240at 239.964 kb on + strand, within MMJJ_RS01240at 239.966 kb on - strand, within MMJJ_RS01240at 239.996 kb on + strandat 239.998 kb on + strand, within MMJJ_RS01240at 239.998 kb on + strand, within MMJJ_RS01240at 240.032 kb on + strand, within MMJJ_RS01240at 240.034 kb on - strand, within MMJJ_RS01240at 240.034 kb on - strand, within MMJJ_RS01240at 240.042 kb on + strand, within MMJJ_RS01240at 240.066 kb on + strand, within MMJJ_RS01240at 240.066 kb on + strand, within MMJJ_RS01240at 240.101 kb on + strand, within MMJJ_RS01240at 240.234 kb on - strand, within MMJJ_RS01240at 240.250 kb on - strand, within MMJJ_RS01240at 240.275 kb on + strand, within MMJJ_RS01240at 240.298 kb on - strand, within MMJJ_RS01240at 240.394 kb on - strand, within MMJJ_RS01240at 240.402 kb on + strand, within MMJJ_RS01240at 240.448 kb on - strand, within MMJJ_RS01240at 240.449 kb on + strand, within MMJJ_RS01240at 240.449 kb on + strand, within MMJJ_RS01240at 240.551 kb on - strandat 240.606 kb on - strandat 240.654 kb on + strandat 240.668 kb on + strandat 240.711 kb on + strandat 240.796 kb on + strandat 240.838 kb on + strandat 240.895 kb on + strand, within MMJJ_RS01245at 240.959 kb on + strand, within MMJJ_RS01245at 240.974 kb on + strand, within MMJJ_RS01245at 240.980 kb on + strand, within MMJJ_RS01245at 240.997 kb on - strand, within MMJJ_RS01245at 241.000 kb on + strand, within MMJJ_RS01245at 241.018 kb on - strand, within MMJJ_RS01245at 241.019 kb on + strand, within MMJJ_RS01245at 241.020 kb on - strand, within MMJJ_RS01245at 241.021 kb on + strand, within MMJJ_RS01245at 241.106 kb on - strand, within MMJJ_RS01245at 241.106 kb on - strand, within MMJJ_RS01245at 241.130 kb on - strand, within MMJJ_RS01245at 241.130 kb on - strand, within MMJJ_RS01245at 241.130 kb on - strand, within MMJJ_RS01245at 241.130 kb on - strand, within MMJJ_RS01245at 241.130 kb on - strand, within MMJJ_RS01245at 241.131 kb on + strand, within MMJJ_RS01245at 241.131 kb on + strand, within MMJJ_RS01245at 241.131 kb on + strand, within MMJJ_RS01245at 241.131 kb on + strand, within MMJJ_RS01245at 241.131 kb on + strand, within MMJJ_RS01245at 241.131 kb on + strand, within MMJJ_RS01245at 241.131 kb on + strand, within MMJJ_RS01245at 241.132 kb on - strand, within MMJJ_RS01245at 241.132 kb on - strand, within MMJJ_RS01245at 241.132 kb on - strand, within MMJJ_RS01245at 241.132 kb on - strand, within MMJJ_RS01245at 241.132 kb on - strand, within MMJJ_RS01245at 241.132 kb on - strand, within MMJJ_RS01245at 241.133 kb on + strand, within MMJJ_RS01245at 241.133 kb on + strand, within MMJJ_RS01245at 241.133 kb on + strand, within MMJJ_RS01245at 241.133 kb on + strand, within MMJJ_RS01245at 241.223 kb on - strand, within MMJJ_RS01245at 241.260 kb on + strand, within MMJJ_RS01245at 241.295 kb on - strand, within MMJJ_RS01245at 241.295 kb on - strand, within MMJJ_RS01245at 241.299 kb on - strand, within MMJJ_RS01245at 241.417 kb on - strand, within MMJJ_RS01245at 241.484 kb on - strand, within MMJJ_RS01245at 241.485 kb on + strand, within MMJJ_RS01245at 241.509 kb on + strand, within MMJJ_RS01245at 241.663 kb on - strand, within MMJJ_RS01245at 241.663 kb on - strand, within MMJJ_RS01245at 241.688 kb on - strand, within MMJJ_RS01245

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Ticarcillin 12.5 mM
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238,181 - MMJJ_RS01235 0.68 -1.5
238,182 + MMJJ_RS01235 0.68 -2.0
238,187 + MMJJ_RS01235 0.68 +0.3
238,268 + MMJJ_RS01235 0.71 +2.5
238,275 - MMJJ_RS01235 0.71 -3.8
238,444 - MMJJ_RS01235 0.77 -1.8
238,445 + MMJJ_RS01235 0.77 -0.3
238,467 - MMJJ_RS01235 0.78 -1.2
238,566 - MMJJ_RS01235 0.81 +1.0
238,566 - MMJJ_RS01235 0.81 -0.3
238,576 + MMJJ_RS01235 0.82 +2.3
238,576 + MMJJ_RS01235 0.82 +0.6
238,634 - MMJJ_RS01235 0.84 +3.0
238,668 - MMJJ_RS01235 0.85 +3.9
238,675 + MMJJ_RS01235 0.85 +0.4
238,693 + MMJJ_RS01235 0.86 +1.5
238,726 - MMJJ_RS01235 0.87 +0.5
238,727 + MMJJ_RS01235 0.87 -1.1
238,731 - MMJJ_RS01235 0.87 -1.1
238,731 - MMJJ_RS01235 0.87 +0.8
238,732 + MMJJ_RS01235 0.87 +1.2
238,737 + MMJJ_RS01235 0.87 -4.0
238,827 + -2.6
238,828 - +1.8
238,828 - +0.6
238,829 + -1.3
238,829 + +0.0
238,829 + +2.2
238,832 - -2.6
238,922 - +0.0
238,923 + +0.7
238,923 + +3.2
238,949 - +0.7
239,055 + -1.8
239,104 - +1.7
239,112 - +1.9
239,113 + -4.2
239,147 - -2.0
239,149 - -1.1
239,154 + +0.5
239,215 - +1.0
239,219 + -0.4
239,292 - MMJJ_RS01240 0.12 -2.6
239,349 + MMJJ_RS01240 0.15 -3.3
239,360 - MMJJ_RS01240 0.16 +1.4
239,361 + MMJJ_RS01240 0.16 -3.0
239,368 + MMJJ_RS01240 0.16 -1.5
239,374 + MMJJ_RS01240 0.17 +1.3
239,396 - MMJJ_RS01240 0.18 -0.5
239,396 - MMJJ_RS01240 0.18 -0.1
239,396 - MMJJ_RS01240 0.18 +0.1
239,396 - MMJJ_RS01240 0.18 -3.3
239,396 - MMJJ_RS01240 0.18 -4.4
239,397 + MMJJ_RS01240 0.18 +0.9
239,397 + MMJJ_RS01240 0.18 -0.3
239,398 - MMJJ_RS01240 0.18 -0.9
239,403 + MMJJ_RS01240 0.19 -1.3
239,403 + MMJJ_RS01240 0.19 -1.2
239,447 + MMJJ_RS01240 0.21 -1.6
239,479 - MMJJ_RS01240 0.23 -0.6
239,502 + MMJJ_RS01240 0.25 -0.1
239,502 + MMJJ_RS01240 0.25 +0.8
239,581 - MMJJ_RS01240 0.30 -1.6
239,606 + MMJJ_RS01240 0.31 +1.2
239,606 + MMJJ_RS01240 0.31 -3.7
239,815 + MMJJ_RS01240 0.45 +0.2
239,866 - MMJJ_RS01240 0.48 +1.1
239,869 + MMJJ_RS01240 0.48 -1.7
239,964 + MMJJ_RS01240 0.54 +1.0
239,966 - MMJJ_RS01240 0.54 -2.2
239,996 + +0.6
239,998 + MMJJ_RS01240 0.56 +2.4
239,998 + MMJJ_RS01240 0.56 -2.8
240,032 + MMJJ_RS01240 0.58 +2.9
240,034 - MMJJ_RS01240 0.58 -2.1
240,034 - MMJJ_RS01240 0.58 -2.4
240,042 + MMJJ_RS01240 0.59 +3.9
240,066 + MMJJ_RS01240 0.60 +0.4
240,066 + MMJJ_RS01240 0.60 -4.4
240,101 + MMJJ_RS01240 0.63 -1.0
240,234 - MMJJ_RS01240 0.71 +1.4
240,250 - MMJJ_RS01240 0.72 -4.4
240,275 + MMJJ_RS01240 0.74 +5.3
240,298 - MMJJ_RS01240 0.75 +0.2
240,394 - MMJJ_RS01240 0.81 +1.7
240,402 + MMJJ_RS01240 0.82 +1.6
240,448 - MMJJ_RS01240 0.85 -1.9
240,449 + MMJJ_RS01240 0.85 -0.4
240,449 + MMJJ_RS01240 0.85 -4.2
240,551 - +1.8
240,606 - +0.4
240,654 + -0.9
240,668 + -0.4
240,711 + -0.4
240,796 + -0.6
240,838 + +0.6
240,895 + MMJJ_RS01245 0.11 +1.6
240,959 + MMJJ_RS01245 0.14 +2.5
240,974 + MMJJ_RS01245 0.15 +0.2
240,980 + MMJJ_RS01245 0.15 -1.9
240,997 - MMJJ_RS01245 0.16 +0.7
241,000 + MMJJ_RS01245 0.16 +0.7
241,018 - MMJJ_RS01245 0.17 -1.9
241,019 + MMJJ_RS01245 0.17 +1.3
241,020 - MMJJ_RS01245 0.17 +1.2
241,021 + MMJJ_RS01245 0.17 -2.3
241,106 - MMJJ_RS01245 0.22 +1.1
241,106 - MMJJ_RS01245 0.22 -3.2
241,130 - MMJJ_RS01245 0.23 +0.9
241,130 - MMJJ_RS01245 0.23 +0.2
241,130 - MMJJ_RS01245 0.23 -3.8
241,130 - MMJJ_RS01245 0.23 -1.8
241,130 - MMJJ_RS01245 0.23 -0.9
241,131 + MMJJ_RS01245 0.23 +0.2
241,131 + MMJJ_RS01245 0.23 -2.7
241,131 + MMJJ_RS01245 0.23 -1.5
241,131 + MMJJ_RS01245 0.23 +0.6
241,131 + MMJJ_RS01245 0.23 -0.5
241,131 + MMJJ_RS01245 0.23 -1.8
241,131 + MMJJ_RS01245 0.23 +2.3
241,132 - MMJJ_RS01245 0.23 +1.5
241,132 - MMJJ_RS01245 0.23 -1.8
241,132 - MMJJ_RS01245 0.23 -3.1
241,132 - MMJJ_RS01245 0.23 -0.8
241,132 - MMJJ_RS01245 0.23 -3.4
241,132 - MMJJ_RS01245 0.23 -2.5
241,133 + MMJJ_RS01245 0.23 +0.4
241,133 + MMJJ_RS01245 0.23 -0.4
241,133 + MMJJ_RS01245 0.23 -0.9
241,133 + MMJJ_RS01245 0.23 -4.1
241,223 - MMJJ_RS01245 0.28 +2.4
241,260 + MMJJ_RS01245 0.29 +1.8
241,295 - MMJJ_RS01245 0.31 -0.9
241,295 - MMJJ_RS01245 0.31 -1.3
241,299 - MMJJ_RS01245 0.31 -0.4
241,417 - MMJJ_RS01245 0.38 +1.8
241,484 - MMJJ_RS01245 0.41 -2.8
241,485 + MMJJ_RS01245 0.41 -1.8
241,509 + MMJJ_RS01245 0.42 -0.6
241,663 - MMJJ_RS01245 0.50 -0.1
241,663 - MMJJ_RS01245 0.50 +0.5
241,688 - MMJJ_RS01245 0.52 -3.8

Or see this region's nucleotide sequence