Experiment: McCas_formate_complete sodium nitrite 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03080 and MMJJ_RS03085 are separated by 29 nucleotides MMJJ_RS03085 and MMJJ_RS03090 are separated by 207 nucleotides MMJJ_RS03090 and MMJJ_RS03095 are separated by 87 nucleotides
MMJJ_RS03080: MMJJ_RS03080 - carbohydrate kinase family protein, at 578,695 to 579,603
_RS03080
MMJJ_RS03085: MMJJ_RS03085 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 579,633 to 580,349
_RS03085
MMJJ_RS03090: MMJJ_RS03090 - ECF transporter S component, at 580,557 to 581,153
_RS03090
MMJJ_RS03095: MMJJ_RS03095 - bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase, at 581,241 to 582,884
_RS03095
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 578.666 kb on - strand at 578.666 kb on - strand at 578.666 kb on - strand at 578.667 kb on + strand at 578.667 kb on + strand at 578.674 kb on + strand at 578.697 kb on + strand at 578.698 kb on - strand at 578.699 kb on + strand at 578.716 kb on + strand at 578.774 kb on + strand at 578.774 kb on + strand at 578.788 kb on - strand, within MMJJ_RS03080 at 578.788 kb on - strand, within MMJJ_RS03080 at 578.789 kb on + strand, within MMJJ_RS03080 at 578.789 kb on + strand, within MMJJ_RS03080 at 578.833 kb on - strand, within MMJJ_RS03080 at 578.837 kb on - strand, within MMJJ_RS03080 at 578.837 kb on - strand, within MMJJ_RS03080 at 578.902 kb on - strand, within MMJJ_RS03080 at 578.916 kb on - strand, within MMJJ_RS03080 at 578.917 kb on + strand, within MMJJ_RS03080 at 578.917 kb on + strand, within MMJJ_RS03080 at 578.936 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.939 kb on + strand, within MMJJ_RS03080 at 578.939 kb on + strand, within MMJJ_RS03080 at 578.966 kb on + strand, within MMJJ_RS03080 at 578.971 kb on - strand, within MMJJ_RS03080 at 578.989 kb on + strand, within MMJJ_RS03080 at 579.096 kb on - strand, within MMJJ_RS03080 at 579.101 kb on - strand, within MMJJ_RS03080 at 579.101 kb on - strand, within MMJJ_RS03080 at 579.102 kb on + strand, within MMJJ_RS03080 at 579.102 kb on + strand, within MMJJ_RS03080 at 579.103 kb on - strand, within MMJJ_RS03080 at 579.109 kb on - strand, within MMJJ_RS03080 at 579.110 kb on + strand, within MMJJ_RS03080 at 579.205 kb on - strand, within MMJJ_RS03080 at 579.424 kb on - strand, within MMJJ_RS03080 at 579.424 kb on - strand, within MMJJ_RS03080 at 579.468 kb on - strand, within MMJJ_RS03080 at 579.550 kb on - strand at 579.550 kb on - strand at 579.552 kb on - strand at 579.552 kb on - strand at 579.552 kb on - strand at 579.553 kb on + strand at 579.553 kb on + strand at 579.554 kb on - strand at 579.554 kb on - strand at 579.554 kb on - strand at 579.555 kb on + strand at 579.555 kb on + strand at 579.555 kb on + strand at 579.619 kb on - strand at 579.634 kb on - strand at 580.402 kb on - strand at 580.434 kb on - strand at 580.435 kb on + strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.442 kb on - strand at 580.442 kb on - strand at 580.442 kb on - strand at 580.446 kb on - strand at 580.482 kb on + strand at 580.489 kb on - strand at 580.510 kb on + strand at 580.541 kb on - strand at 580.559 kb on + strand at 580.588 kb on + strand at 580.588 kb on + strand at 580.588 kb on + strand at 580.635 kb on - strand, within MMJJ_RS03090 at 580.636 kb on + strand, within MMJJ_RS03090 at 580.672 kb on + strand, within MMJJ_RS03090 at 580.672 kb on + strand, within MMJJ_RS03090 at 580.692 kb on - strand at 580.693 kb on + strand, within MMJJ_RS03090 at 580.693 kb on + strand, within MMJJ_RS03090 at 580.693 kb on + strand, within MMJJ_RS03090 at 580.729 kb on - strand, within MMJJ_RS03090 at 580.729 kb on - strand, within MMJJ_RS03090 at 580.729 kb on - strand, within MMJJ_RS03090 at 580.729 kb on - strand, within MMJJ_RS03090 at 580.729 kb on - strand, within MMJJ_RS03090 at 580.729 kb on - strand, within MMJJ_RS03090 at 580.729 kb on - strand, within MMJJ_RS03090 at 580.730 kb on + strand, within MMJJ_RS03090 at 580.730 kb on + strand, within MMJJ_RS03090 at 580.730 kb on + strand, within MMJJ_RS03090 at 580.730 kb on + strand, within MMJJ_RS03090 at 580.730 kb on + strand, within MMJJ_RS03090 at 580.731 kb on - strand, within MMJJ_RS03090 at 580.731 kb on - strand, within MMJJ_RS03090 at 580.731 kb on - strand, within MMJJ_RS03090 at 580.731 kb on - strand, within MMJJ_RS03090 at 580.731 kb on - strand, within MMJJ_RS03090 at 580.731 kb on - strand, within MMJJ_RS03090 at 580.732 kb on + strand, within MMJJ_RS03090 at 580.732 kb on + strand, within MMJJ_RS03090 at 580.737 kb on - strand, within MMJJ_RS03090 at 580.737 kb on - strand, within MMJJ_RS03090 at 580.738 kb on + strand, within MMJJ_RS03090 at 580.738 kb on + strand, within MMJJ_RS03090 at 580.738 kb on + strand, within MMJJ_RS03090 at 580.738 kb on + strand, within MMJJ_RS03090 at 580.761 kb on + strand, within MMJJ_RS03090 at 580.777 kb on - strand, within MMJJ_RS03090 at 580.777 kb on - strand, within MMJJ_RS03090 at 580.778 kb on + strand, within MMJJ_RS03090 at 580.781 kb on + strand, within MMJJ_RS03090 at 580.781 kb on + strand, within MMJJ_RS03090 at 580.789 kb on + strand, within MMJJ_RS03090 at 580.789 kb on + strand, within MMJJ_RS03090 at 580.789 kb on + strand, within MMJJ_RS03090 at 580.789 kb on + strand, within MMJJ_RS03090 at 580.790 kb on - strand, within MMJJ_RS03090 at 580.790 kb on - strand, within MMJJ_RS03090 at 580.791 kb on + strand, within MMJJ_RS03090 at 580.791 kb on + strand, within MMJJ_RS03090 at 580.834 kb on + strand, within MMJJ_RS03090 at 580.834 kb on + strand, within MMJJ_RS03090 at 580.835 kb on - strand, within MMJJ_RS03090 at 580.843 kb on - strand, within MMJJ_RS03090 at 580.844 kb on + strand, within MMJJ_RS03090 at 580.874 kb on - strand, within MMJJ_RS03090 at 580.908 kb on - strand, within MMJJ_RS03090 at 580.909 kb on + strand, within MMJJ_RS03090 at 580.918 kb on - strand, within MMJJ_RS03090 at 580.918 kb on - strand, within MMJJ_RS03090 at 580.919 kb on + strand, within MMJJ_RS03090 at 580.922 kb on + strand, within MMJJ_RS03090 at 580.922 kb on + strand, within MMJJ_RS03090 at 580.933 kb on - strand, within MMJJ_RS03090 at 580.933 kb on - strand, within MMJJ_RS03090 at 581.015 kb on - strand, within MMJJ_RS03090 at 581.015 kb on - strand, within MMJJ_RS03090 at 581.016 kb on + strand, within MMJJ_RS03090 at 581.016 kb on + strand, within MMJJ_RS03090 at 581.028 kb on + strand, within MMJJ_RS03090 at 581.028 kb on + strand, within MMJJ_RS03090 at 581.031 kb on - strand, within MMJJ_RS03090 at 581.053 kb on - strand, within MMJJ_RS03090 at 581.053 kb on - strand, within MMJJ_RS03090 at 581.054 kb on + strand, within MMJJ_RS03090 at 581.054 kb on + strand, within MMJJ_RS03090 at 581.054 kb on + strand, within MMJJ_RS03090 at 581.058 kb on + strand, within MMJJ_RS03090 at 581.074 kb on + strand, within MMJJ_RS03090 at 581.074 kb on + strand, within MMJJ_RS03090 at 581.107 kb on - strand at 581.142 kb on - strand at 581.153 kb on - strand at 581.153 kb on - strand at 581.154 kb on + strand at 581.156 kb on - strand at 581.156 kb on - strand at 581.157 kb on + strand at 581.162 kb on + strand at 581.162 kb on + strand at 581.172 kb on - strand at 581.173 kb on + strand at 581.184 kb on + strand at 581.197 kb on - strand at 581.197 kb on - strand at 581.197 kb on - strand at 581.198 kb on + strand at 581.198 kb on + strand at 581.198 kb on + strand at 581.201 kb on - strand at 581.201 kb on - strand at 581.201 kb on - strand at 581.202 kb on + strand at 581.202 kb on + strand at 581.202 kb on + strand at 581.202 kb on + strand at 581.203 kb on - strand at 581.206 kb on + strand at 581.230 kb on + strand at 581.248 kb on - strand at 581.249 kb on + strand at 581.249 kb on + strand at 581.249 kb on + strand at 581.249 kb on + strand at 581.249 kb on + strand at 581.306 kb on + strand at 581.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.125 mM remove 578,666 - -1.0 578,666 - -2.2 578,666 - +0.2 578,667 + -0.4 578,667 + +0.9 578,674 + +0.6 578,697 + -0.9 578,698 - -1.3 578,699 + -1.3 578,716 + -0.9 578,774 + -0.3 578,774 + -2.7 578,788 - MMJJ_RS03080 0.10 -2.9 578,788 - MMJJ_RS03080 0.10 -0.3 578,789 + MMJJ_RS03080 0.10 -0.6 578,789 + MMJJ_RS03080 0.10 -1.9 578,833 - MMJJ_RS03080 0.15 +0.1 578,837 - MMJJ_RS03080 0.16 -0.7 578,837 - MMJJ_RS03080 0.16 -3.3 578,902 - MMJJ_RS03080 0.23 -2.8 578,916 - MMJJ_RS03080 0.24 -0.6 578,917 + MMJJ_RS03080 0.24 -2.4 578,917 + MMJJ_RS03080 0.24 -0.8 578,936 - MMJJ_RS03080 0.27 +1.9 578,938 - MMJJ_RS03080 0.27 -1.5 578,938 - MMJJ_RS03080 0.27 -2.2 578,938 - MMJJ_RS03080 0.27 +0.2 578,938 - MMJJ_RS03080 0.27 -1.8 578,939 + MMJJ_RS03080 0.27 -2.7 578,939 + MMJJ_RS03080 0.27 -1.9 578,966 + MMJJ_RS03080 0.30 -0.4 578,971 - MMJJ_RS03080 0.30 -0.9 578,989 + MMJJ_RS03080 0.32 -2.1 579,096 - MMJJ_RS03080 0.44 -1.6 579,101 - MMJJ_RS03080 0.45 +1.7 579,101 - MMJJ_RS03080 0.45 -1.3 579,102 + MMJJ_RS03080 0.45 -1.3 579,102 + MMJJ_RS03080 0.45 +0.2 579,103 - MMJJ_RS03080 0.45 -1.0 579,109 - MMJJ_RS03080 0.46 -1.1 579,110 + MMJJ_RS03080 0.46 -2.4 579,205 - MMJJ_RS03080 0.56 -2.9 579,424 - MMJJ_RS03080 0.80 -2.1 579,424 - MMJJ_RS03080 0.80 -0.2 579,468 - MMJJ_RS03080 0.85 -2.2 579,550 - +0.4 579,550 - -2.3 579,552 - -0.7 579,552 - -1.7 579,552 - -1.7 579,553 + -2.4 579,553 + -1.2 579,554 - -2.8 579,554 - -2.3 579,554 - -0.7 579,555 + -0.9 579,555 + -2.9 579,555 + -0.7 579,619 - -1.6 579,634 - -2.0 580,402 - +1.9 580,434 - +0.3 580,435 + +1.2 580,436 - -3.0 580,436 - -1.1 580,437 + -2.5 580,437 + -2.5 580,437 + -2.3 580,437 + -2.3 580,437 + -2.2 580,437 + -1.4 580,437 + -1.4 580,442 - -1.3 580,442 - -0.3 580,442 - -1.5 580,446 - -0.2 580,482 + +1.2 580,489 - -1.3 580,510 + -1.0 580,541 - -0.4 580,559 + +0.7 580,588 + +0.5 580,588 + -0.5 580,588 + -1.5 580,635 - MMJJ_RS03090 0.13 +1.2 580,636 + MMJJ_RS03090 0.13 +1.2 580,672 + MMJJ_RS03090 0.19 -1.0 580,672 + MMJJ_RS03090 0.19 -0.6 580,692 - +0.9 580,693 + MMJJ_RS03090 0.23 -1.3 580,693 + MMJJ_RS03090 0.23 +0.6 580,693 + MMJJ_RS03090 0.23 +0.1 580,729 - MMJJ_RS03090 0.29 +0.2 580,729 - MMJJ_RS03090 0.29 +0.3 580,729 - MMJJ_RS03090 0.29 -0.7 580,729 - MMJJ_RS03090 0.29 +1.8 580,729 - MMJJ_RS03090 0.29 +0.2 580,729 - MMJJ_RS03090 0.29 +0.2 580,729 - MMJJ_RS03090 0.29 +2.1 580,730 + MMJJ_RS03090 0.29 -0.4 580,730 + MMJJ_RS03090 0.29 -2.3 580,730 + MMJJ_RS03090 0.29 -3.2 580,730 + MMJJ_RS03090 0.29 -0.0 580,730 + MMJJ_RS03090 0.29 +0.2 580,731 - MMJJ_RS03090 0.29 -1.2 580,731 - MMJJ_RS03090 0.29 -1.0 580,731 - MMJJ_RS03090 0.29 +0.4 580,731 - MMJJ_RS03090 0.29 -0.7 580,731 - MMJJ_RS03090 0.29 -0.8 580,731 - MMJJ_RS03090 0.29 +0.4 580,732 + MMJJ_RS03090 0.29 +1.0 580,732 + MMJJ_RS03090 0.29 -1.9 580,737 - MMJJ_RS03090 0.30 -0.3 580,737 - MMJJ_RS03090 0.30 +0.7 580,738 + MMJJ_RS03090 0.30 -0.4 580,738 + MMJJ_RS03090 0.30 -0.7 580,738 + MMJJ_RS03090 0.30 -0.1 580,738 + MMJJ_RS03090 0.30 -1.2 580,761 + MMJJ_RS03090 0.34 -0.2 580,777 - MMJJ_RS03090 0.37 +0.5 580,777 - MMJJ_RS03090 0.37 +0.3 580,778 + MMJJ_RS03090 0.37 +0.1 580,781 + MMJJ_RS03090 0.38 -0.3 580,781 + MMJJ_RS03090 0.38 +0.1 580,789 + MMJJ_RS03090 0.39 -1.1 580,789 + MMJJ_RS03090 0.39 -1.2 580,789 + MMJJ_RS03090 0.39 -1.0 580,789 + MMJJ_RS03090 0.39 +0.0 580,790 - MMJJ_RS03090 0.39 +0.6 580,790 - MMJJ_RS03090 0.39 -0.1 580,791 + MMJJ_RS03090 0.39 -1.5 580,791 + MMJJ_RS03090 0.39 +1.4 580,834 + MMJJ_RS03090 0.46 -0.7 580,834 + MMJJ_RS03090 0.46 -3.2 580,835 - MMJJ_RS03090 0.47 -0.9 580,843 - MMJJ_RS03090 0.48 -0.2 580,844 + MMJJ_RS03090 0.48 -0.8 580,874 - MMJJ_RS03090 0.53 -0.7 580,908 - MMJJ_RS03090 0.59 -0.3 580,909 + MMJJ_RS03090 0.59 -1.4 580,918 - MMJJ_RS03090 0.60 -0.2 580,918 - MMJJ_RS03090 0.60 -0.6 580,919 + MMJJ_RS03090 0.61 -1.7 580,922 + MMJJ_RS03090 0.61 +0.0 580,922 + MMJJ_RS03090 0.61 -0.3 580,933 - MMJJ_RS03090 0.63 -1.7 580,933 - MMJJ_RS03090 0.63 +1.1 581,015 - MMJJ_RS03090 0.77 -0.5 581,015 - MMJJ_RS03090 0.77 +1.2 581,016 + MMJJ_RS03090 0.77 +0.4 581,016 + MMJJ_RS03090 0.77 +1.7 581,028 + MMJJ_RS03090 0.79 -1.1 581,028 + MMJJ_RS03090 0.79 -1.8 581,031 - MMJJ_RS03090 0.79 +1.2 581,053 - MMJJ_RS03090 0.83 -0.4 581,053 - MMJJ_RS03090 0.83 -1.2 581,054 + MMJJ_RS03090 0.83 -0.8 581,054 + MMJJ_RS03090 0.83 +1.3 581,054 + MMJJ_RS03090 0.83 +0.6 581,058 + MMJJ_RS03090 0.84 +0.6 581,074 + MMJJ_RS03090 0.87 +0.4 581,074 + MMJJ_RS03090 0.87 -0.9 581,107 - +0.7 581,142 - -1.2 581,153 - -0.5 581,153 - +0.5 581,154 + +0.8 581,156 - -0.5 581,156 - -0.1 581,157 + -1.2 581,162 + +0.9 581,162 + +0.7 581,172 - +0.2 581,173 + -1.2 581,184 + +1.9 581,197 - +0.6 581,197 - -1.7 581,197 - +1.5 581,198 + +3.4 581,198 + +2.1 581,198 + +1.1 581,201 - +0.7 581,201 - +1.6 581,201 - -0.0 581,202 + +0.6 581,202 + +2.4 581,202 + +0.6 581,202 + -1.1 581,203 - -0.4 581,206 + -0.8 581,230 + +0.6 581,248 - -1.7 581,249 + +0.7 581,249 + +2.1 581,249 + -0.9 581,249 + -0.7 581,249 + +0.3 581,306 + +0.3 581,330 - +0.9
Or see this region's nucleotide sequence