Experiment: McCas_formate_complete sodium nitrite 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03075 and MMJJ_RS03080 are separated by 141 nucleotides MMJJ_RS03080 and MMJJ_RS03085 are separated by 29 nucleotides MMJJ_RS03085 and MMJJ_RS03090 are separated by 207 nucleotides
MMJJ_RS03075: MMJJ_RS03075 - sodium-dependent transporter, at 577,042 to 578,553
_RS03075
MMJJ_RS03080: MMJJ_RS03080 - carbohydrate kinase family protein, at 578,695 to 579,603
_RS03080
MMJJ_RS03085: MMJJ_RS03085 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 579,633 to 580,349
_RS03085
MMJJ_RS03090: MMJJ_RS03090 - ECF transporter S component, at 580,557 to 581,153
_RS03090
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 577.697 kb on + strand, within MMJJ_RS03075 at 577.802 kb on + strand, within MMJJ_RS03075 at 577.802 kb on + strand, within MMJJ_RS03075 at 577.816 kb on + strand, within MMJJ_RS03075 at 577.823 kb on - strand, within MMJJ_RS03075 at 577.823 kb on - strand, within MMJJ_RS03075 at 577.846 kb on + strand, within MMJJ_RS03075 at 577.937 kb on - strand, within MMJJ_RS03075 at 577.940 kb on - strand, within MMJJ_RS03075 at 577.941 kb on + strand, within MMJJ_RS03075 at 577.954 kb on + strand, within MMJJ_RS03075 at 577.971 kb on - strand, within MMJJ_RS03075 at 578.021 kb on + strand, within MMJJ_RS03075 at 578.052 kb on - strand, within MMJJ_RS03075 at 578.065 kb on - strand, within MMJJ_RS03075 at 578.076 kb on + strand, within MMJJ_RS03075 at 578.076 kb on + strand, within MMJJ_RS03075 at 578.080 kb on - strand, within MMJJ_RS03075 at 578.080 kb on - strand, within MMJJ_RS03075 at 578.225 kb on - strand, within MMJJ_RS03075 at 578.225 kb on - strand, within MMJJ_RS03075 at 578.231 kb on + strand, within MMJJ_RS03075 at 578.245 kb on + strand, within MMJJ_RS03075 at 578.245 kb on + strand, within MMJJ_RS03075 at 578.255 kb on - strand, within MMJJ_RS03075 at 578.258 kb on - strand, within MMJJ_RS03075 at 578.265 kb on - strand, within MMJJ_RS03075 at 578.269 kb on - strand, within MMJJ_RS03075 at 578.285 kb on + strand, within MMJJ_RS03075 at 578.285 kb on + strand, within MMJJ_RS03075 at 578.408 kb on + strand at 578.462 kb on - strand at 578.477 kb on + strand at 578.479 kb on + strand at 578.600 kb on - strand at 578.607 kb on - strand at 578.607 kb on - strand at 578.608 kb on + strand at 578.609 kb on - strand at 578.610 kb on + strand at 578.611 kb on - strand at 578.612 kb on + strand at 578.666 kb on - strand at 578.666 kb on - strand at 578.666 kb on - strand at 578.667 kb on + strand at 578.667 kb on + strand at 578.674 kb on + strand at 578.697 kb on + strand at 578.698 kb on - strand at 578.699 kb on + strand at 578.716 kb on + strand at 578.774 kb on + strand at 578.774 kb on + strand at 578.788 kb on - strand, within MMJJ_RS03080 at 578.788 kb on - strand, within MMJJ_RS03080 at 578.789 kb on + strand, within MMJJ_RS03080 at 578.789 kb on + strand, within MMJJ_RS03080 at 578.833 kb on - strand, within MMJJ_RS03080 at 578.837 kb on - strand, within MMJJ_RS03080 at 578.837 kb on - strand, within MMJJ_RS03080 at 578.902 kb on - strand, within MMJJ_RS03080 at 578.916 kb on - strand, within MMJJ_RS03080 at 578.917 kb on + strand, within MMJJ_RS03080 at 578.917 kb on + strand, within MMJJ_RS03080 at 578.936 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.939 kb on + strand, within MMJJ_RS03080 at 578.939 kb on + strand, within MMJJ_RS03080 at 578.966 kb on + strand, within MMJJ_RS03080 at 578.971 kb on - strand, within MMJJ_RS03080 at 578.989 kb on + strand, within MMJJ_RS03080 at 579.096 kb on - strand, within MMJJ_RS03080 at 579.101 kb on - strand, within MMJJ_RS03080 at 579.101 kb on - strand, within MMJJ_RS03080 at 579.102 kb on + strand, within MMJJ_RS03080 at 579.102 kb on + strand, within MMJJ_RS03080 at 579.103 kb on - strand, within MMJJ_RS03080 at 579.109 kb on - strand, within MMJJ_RS03080 at 579.110 kb on + strand, within MMJJ_RS03080 at 579.205 kb on - strand, within MMJJ_RS03080 at 579.424 kb on - strand, within MMJJ_RS03080 at 579.424 kb on - strand, within MMJJ_RS03080 at 579.468 kb on - strand, within MMJJ_RS03080 at 579.550 kb on - strand at 579.550 kb on - strand at 579.552 kb on - strand at 579.552 kb on - strand at 579.552 kb on - strand at 579.553 kb on + strand at 579.553 kb on + strand at 579.554 kb on - strand at 579.554 kb on - strand at 579.554 kb on - strand at 579.555 kb on + strand at 579.555 kb on + strand at 579.555 kb on + strand at 579.619 kb on - strand at 579.634 kb on - strand at 580.402 kb on - strand at 580.434 kb on - strand at 580.435 kb on + strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.442 kb on - strand at 580.442 kb on - strand at 580.442 kb on - strand at 580.446 kb on - strand at 580.482 kb on + strand at 580.489 kb on - strand at 580.510 kb on + strand at 580.541 kb on - strand at 580.559 kb on + strand at 580.588 kb on + strand at 580.588 kb on + strand at 580.588 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.125 mM remove 577,697 + MMJJ_RS03075 0.43 +2.5 577,802 + MMJJ_RS03075 0.50 -0.7 577,802 + MMJJ_RS03075 0.50 +0.5 577,816 + MMJJ_RS03075 0.51 +2.3 577,823 - MMJJ_RS03075 0.52 -1.5 577,823 - MMJJ_RS03075 0.52 -1.7 577,846 + MMJJ_RS03075 0.53 +0.5 577,937 - MMJJ_RS03075 0.59 +0.4 577,940 - MMJJ_RS03075 0.59 +0.6 577,941 + MMJJ_RS03075 0.59 +1.0 577,954 + MMJJ_RS03075 0.60 +1.3 577,971 - MMJJ_RS03075 0.61 -1.7 578,021 + MMJJ_RS03075 0.65 -3.5 578,052 - MMJJ_RS03075 0.67 -0.6 578,065 - MMJJ_RS03075 0.68 +2.1 578,076 + MMJJ_RS03075 0.68 +1.7 578,076 + MMJJ_RS03075 0.68 +1.2 578,080 - MMJJ_RS03075 0.69 -1.2 578,080 - MMJJ_RS03075 0.69 -0.2 578,225 - MMJJ_RS03075 0.78 +1.5 578,225 - MMJJ_RS03075 0.78 -0.0 578,231 + MMJJ_RS03075 0.79 +0.5 578,245 + MMJJ_RS03075 0.80 -0.1 578,245 + MMJJ_RS03075 0.80 +1.5 578,255 - MMJJ_RS03075 0.80 +1.2 578,258 - MMJJ_RS03075 0.80 +3.0 578,265 - MMJJ_RS03075 0.81 -0.5 578,269 - MMJJ_RS03075 0.81 +1.7 578,285 + MMJJ_RS03075 0.82 -1.1 578,285 + MMJJ_RS03075 0.82 +2.0 578,408 + -0.7 578,462 - +0.3 578,477 + -0.8 578,479 + +0.6 578,600 - -1.2 578,607 - -1.5 578,607 - -1.3 578,608 + +1.5 578,609 - +1.7 578,610 + -0.2 578,611 - +0.3 578,612 + +0.8 578,666 - -1.0 578,666 - -2.2 578,666 - +0.2 578,667 + -0.4 578,667 + +0.9 578,674 + +0.6 578,697 + -0.9 578,698 - -1.3 578,699 + -1.3 578,716 + -0.9 578,774 + -0.3 578,774 + -2.7 578,788 - MMJJ_RS03080 0.10 -2.9 578,788 - MMJJ_RS03080 0.10 -0.3 578,789 + MMJJ_RS03080 0.10 -0.6 578,789 + MMJJ_RS03080 0.10 -1.9 578,833 - MMJJ_RS03080 0.15 +0.1 578,837 - MMJJ_RS03080 0.16 -0.7 578,837 - MMJJ_RS03080 0.16 -3.3 578,902 - MMJJ_RS03080 0.23 -2.8 578,916 - MMJJ_RS03080 0.24 -0.6 578,917 + MMJJ_RS03080 0.24 -2.4 578,917 + MMJJ_RS03080 0.24 -0.8 578,936 - MMJJ_RS03080 0.27 +1.9 578,938 - MMJJ_RS03080 0.27 -1.5 578,938 - MMJJ_RS03080 0.27 -2.2 578,938 - MMJJ_RS03080 0.27 +0.2 578,938 - MMJJ_RS03080 0.27 -1.8 578,939 + MMJJ_RS03080 0.27 -2.7 578,939 + MMJJ_RS03080 0.27 -1.9 578,966 + MMJJ_RS03080 0.30 -0.4 578,971 - MMJJ_RS03080 0.30 -0.9 578,989 + MMJJ_RS03080 0.32 -2.1 579,096 - MMJJ_RS03080 0.44 -1.6 579,101 - MMJJ_RS03080 0.45 +1.7 579,101 - MMJJ_RS03080 0.45 -1.3 579,102 + MMJJ_RS03080 0.45 -1.3 579,102 + MMJJ_RS03080 0.45 +0.2 579,103 - MMJJ_RS03080 0.45 -1.0 579,109 - MMJJ_RS03080 0.46 -1.1 579,110 + MMJJ_RS03080 0.46 -2.4 579,205 - MMJJ_RS03080 0.56 -2.9 579,424 - MMJJ_RS03080 0.80 -2.1 579,424 - MMJJ_RS03080 0.80 -0.2 579,468 - MMJJ_RS03080 0.85 -2.2 579,550 - +0.4 579,550 - -2.3 579,552 - -0.7 579,552 - -1.7 579,552 - -1.7 579,553 + -2.4 579,553 + -1.2 579,554 - -2.8 579,554 - -2.3 579,554 - -0.7 579,555 + -0.9 579,555 + -2.9 579,555 + -0.7 579,619 - -1.6 579,634 - -2.0 580,402 - +1.9 580,434 - +0.3 580,435 + +1.2 580,436 - -3.0 580,436 - -1.1 580,437 + -2.5 580,437 + -2.5 580,437 + -2.3 580,437 + -2.3 580,437 + -2.2 580,437 + -1.4 580,437 + -1.4 580,442 - -1.3 580,442 - -0.3 580,442 - -1.5 580,446 - -0.2 580,482 + +1.2 580,489 - -1.3 580,510 + -1.0 580,541 - -0.4 580,559 + +0.7 580,588 + +0.5 580,588 + -0.5 580,588 + -1.5
Or see this region's nucleotide sequence