Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02860

Experiment: McCas_formate_complete 2,2-dibromo-2-cyanoacetamide 0.00833333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02860 and MMJJ_RS02865 are separated by 103 nucleotidesMMJJ_RS02865 and MMJJ_RS02870 are separated by 115 nucleotides MMJJ_RS02860: MMJJ_RS02860 - site-specific integrase, at 539,832 to 540,380 _RS02860 MMJJ_RS02865: MMJJ_RS02865 - amino acid ABC transporter substrate-binding protein, at 540,484 to 541,230 _RS02865 MMJJ_RS02870: MMJJ_RS02870 - hypothetical protein, at 541,346 to 541,867 _RS02870 Position (kb) 539 540 541Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 538.900 kb on + strandat 538.900 kb on + strandat 538.943 kb on - strandat 538.950 kb on + strandat 538.953 kb on + strandat 538.957 kb on - strandat 538.957 kb on - strandat 538.965 kb on - strandat 538.975 kb on - strandat 538.976 kb on + strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.993 kb on + strandat 538.993 kb on + strandat 538.993 kb on + strandat 538.993 kb on + strandat 538.993 kb on + strandat 538.993 kb on + strandat 538.993 kb on + strandat 538.994 kb on - strandat 538.995 kb on + strandat 538.995 kb on + strandat 538.995 kb on + strandat 538.998 kb on - strandat 538.999 kb on + strandat 539.001 kb on - strandat 539.001 kb on - strandat 539.025 kb on + strandat 539.028 kb on - strandat 539.028 kb on - strandat 539.055 kb on - strandat 539.059 kb on - strandat 539.059 kb on - strandat 539.059 kb on - strandat 539.059 kb on - strandat 539.059 kb on - strandat 539.060 kb on + strandat 539.060 kb on + strandat 539.060 kb on + strandat 539.108 kb on - strandat 539.116 kb on - strandat 539.116 kb on - strandat 539.118 kb on - strandat 539.118 kb on - strandat 539.118 kb on - strandat 539.118 kb on - strandat 539.119 kb on + strandat 539.119 kb on + strandat 539.139 kb on + strandat 539.140 kb on - strandat 539.141 kb on + strandat 539.210 kb on - strandat 539.210 kb on - strandat 539.211 kb on + strandat 539.211 kb on + strandat 539.221 kb on - strandat 539.226 kb on + strandat 539.226 kb on + strandat 539.226 kb on + strandat 539.229 kb on - strandat 539.230 kb on + strandat 539.230 kb on + strandat 539.230 kb on + strandat 539.233 kb on - strandat 539.234 kb on + strandat 539.243 kb on - strandat 539.244 kb on + strandat 539.244 kb on + strandat 539.244 kb on + strandat 539.244 kb on + strandat 539.244 kb on + strandat 539.254 kb on - strandat 539.264 kb on - strandat 539.265 kb on + strandat 539.265 kb on + strandat 539.265 kb on + strandat 539.265 kb on + strandat 539.265 kb on + strandat 539.266 kb on - strandat 539.266 kb on - strandat 539.266 kb on - strandat 539.267 kb on + strandat 539.267 kb on + strandat 539.267 kb on + strandat 539.268 kb on - strandat 539.268 kb on - strandat 539.268 kb on - strandat 539.268 kb on - strandat 539.269 kb on + strandat 539.269 kb on + strandat 539.269 kb on + strandat 539.269 kb on + strandat 539.273 kb on - strandat 539.274 kb on + strandat 539.278 kb on - strandat 539.323 kb on - strandat 539.337 kb on - strandat 539.337 kb on - strandat 539.367 kb on - strandat 539.725 kb on - strandat 539.725 kb on - strandat 539.726 kb on + strandat 539.726 kb on + strandat 539.727 kb on - strandat 539.727 kb on - strandat 539.820 kb on - strandat 539.821 kb on + strandat 539.845 kb on + strandat 539.876 kb on + strandat 539.897 kb on + strand, within MMJJ_RS02860at 540.224 kb on - strand, within MMJJ_RS02860at 540.295 kb on - strand, within MMJJ_RS02860at 540.412 kb on - strandat 540.426 kb on + strandat 540.450 kb on + strandat 540.452 kb on - strandat 540.455 kb on + strandat 540.464 kb on - strandat 540.477 kb on - strandat 540.478 kb on + strandat 540.524 kb on - strandat 540.540 kb on - strandat 540.540 kb on - strandat 540.540 kb on - strandat 540.541 kb on + strandat 540.567 kb on - strand, within MMJJ_RS02865at 540.712 kb on - strand, within MMJJ_RS02865at 540.713 kb on + strand, within MMJJ_RS02865at 540.814 kb on + strand, within MMJJ_RS02865at 540.814 kb on + strand, within MMJJ_RS02865at 540.923 kb on - strand, within MMJJ_RS02865at 540.971 kb on - strand, within MMJJ_RS02865at 540.972 kb on + strand, within MMJJ_RS02865at 541.000 kb on - strand, within MMJJ_RS02865at 541.000 kb on - strand, within MMJJ_RS02865at 541.000 kb on - strand, within MMJJ_RS02865at 541.000 kb on - strand, within MMJJ_RS02865at 541.001 kb on + strand, within MMJJ_RS02865at 541.069 kb on - strand, within MMJJ_RS02865at 541.089 kb on + strand, within MMJJ_RS02865at 541.089 kb on + strand, within MMJJ_RS02865at 541.096 kb on + strand, within MMJJ_RS02865at 541.096 kb on + strand, within MMJJ_RS02865at 541.128 kb on + strand, within MMJJ_RS02865at 541.149 kb on + strand, within MMJJ_RS02865at 541.196 kb on + strandat 541.228 kb on - strandat 541.260 kb on - strandat 541.261 kb on + strandat 541.264 kb on + strandat 541.264 kb on + strandat 541.264 kb on + strandat 541.278 kb on + strandat 541.278 kb on + strandat 541.358 kb on - strandat 541.367 kb on - strandat 541.368 kb on + strandat 541.368 kb on + strandat 541.372 kb on - strandat 541.373 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2,2-dibromo-2-cyanoacetamide 0.00833333333333333 mM
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538,900 + -2.8
538,900 + -2.3
538,943 - -0.7
538,950 + +1.6
538,953 + -2.1
538,957 - -0.4
538,957 - -0.7
538,965 - +0.0
538,975 - +0.5
538,976 + -2.7
538,992 - -3.2
538,992 - +1.4
538,992 - +3.7
538,992 - -3.0
538,992 - +2.5
538,992 - +0.6
538,992 - +3.6
538,992 - -1.4
538,993 + -0.2
538,993 + -1.3
538,993 + +1.3
538,993 + -1.7
538,993 + -1.6
538,993 + -2.2
538,993 + -0.1
538,994 - -1.2
538,995 + -1.1
538,995 + +4.7
538,995 + +2.1
538,998 - +0.8
538,999 + -0.8
539,001 - +1.5
539,001 - -1.4
539,025 + -3.8
539,028 - -3.1
539,028 - -0.9
539,055 - +1.9
539,059 - +0.3
539,059 - +0.3
539,059 - -1.5
539,059 - -2.3
539,059 - -1.5
539,060 + -0.1
539,060 + -0.7
539,060 + -0.2
539,108 - -1.5
539,116 - -0.2
539,116 - -0.7
539,118 - +3.3
539,118 - -1.7
539,118 - +3.4
539,118 - -2.4
539,119 + +0.9
539,119 + -3.1
539,139 + -0.4
539,140 - +1.9
539,141 + +1.9
539,210 - -3.3
539,210 - +2.4
539,211 + -1.4
539,211 + -2.8
539,221 - +1.1
539,226 + -3.9
539,226 + -3.4
539,226 + +0.7
539,229 - +1.2
539,230 + +1.9
539,230 + -2.2
539,230 + +2.1
539,233 - -0.1
539,234 + -2.8
539,243 - +0.5
539,244 + -1.1
539,244 + -2.7
539,244 + -1.1
539,244 + +1.3
539,244 + +0.3
539,254 - +3.8
539,264 - +2.8
539,265 + +2.1
539,265 + -2.0
539,265 + +0.1
539,265 + +0.9
539,265 + +0.9
539,266 - -3.0
539,266 - -0.2
539,266 - +1.0
539,267 + +2.1
539,267 + +1.7
539,267 + +1.4
539,268 - -0.8
539,268 - -3.5
539,268 - +1.7
539,268 - -0.1
539,269 + +2.7
539,269 + +1.1
539,269 + -3.5
539,269 + -1.2
539,273 - -3.2
539,274 + -0.2
539,278 - -0.4
539,323 - +1.2
539,337 - +1.4
539,337 - +3.8
539,367 - -0.8
539,725 - -2.5
539,725 - +2.7
539,726 + +3.8
539,726 + +1.3
539,727 - -2.0
539,727 - -0.0
539,820 - -1.9
539,821 + -2.4
539,845 + +2.5
539,876 + -0.6
539,897 + MMJJ_RS02860 0.12 -1.6
540,224 - MMJJ_RS02860 0.71 -2.3
540,295 - MMJJ_RS02860 0.84 -2.2
540,412 - +2.2
540,426 + +4.8
540,450 + +2.7
540,452 - +6.2
540,455 + -0.4
540,464 - -2.0
540,477 - -3.2
540,478 + -1.3
540,524 - -1.4
540,540 - +0.5
540,540 - +1.1
540,540 - +0.2
540,541 + +2.8
540,567 - MMJJ_RS02865 0.11 +3.4
540,712 - MMJJ_RS02865 0.31 +0.5
540,713 + MMJJ_RS02865 0.31 -2.9
540,814 + MMJJ_RS02865 0.44 +2.0
540,814 + MMJJ_RS02865 0.44 -3.1
540,923 - MMJJ_RS02865 0.59 -0.1
540,971 - MMJJ_RS02865 0.65 +4.4
540,972 + MMJJ_RS02865 0.65 -0.6
541,000 - MMJJ_RS02865 0.69 +0.3
541,000 - MMJJ_RS02865 0.69 +1.4
541,000 - MMJJ_RS02865 0.69 +1.5
541,000 - MMJJ_RS02865 0.69 -2.2
541,001 + MMJJ_RS02865 0.69 -0.9
541,069 - MMJJ_RS02865 0.78 -0.5
541,089 + MMJJ_RS02865 0.81 +0.9
541,089 + MMJJ_RS02865 0.81 +2.6
541,096 + MMJJ_RS02865 0.82 -2.3
541,096 + MMJJ_RS02865 0.82 -3.2
541,128 + MMJJ_RS02865 0.86 -4.1
541,149 + MMJJ_RS02865 0.89 +1.0
541,196 + -0.8
541,228 - +1.0
541,260 - -1.2
541,261 + -1.4
541,264 + +0.7
541,264 + +4.2
541,264 + -0.9
541,278 + -0.0
541,278 + -1.7
541,358 - -0.3
541,367 - -1.0
541,368 + -2.6
541,368 + -1.8
541,372 - -1.1
541,373 + -0.5

Or see this region's nucleotide sequence