Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05485

Experiment: McCas_formate_complete Chlorite 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05480 and MMJJ_RS05485 are separated by 56 nucleotidesMMJJ_RS05485 and MMJJ_RS05490 are separated by 73 nucleotidesMMJJ_RS05490 and MMJJ_RS05495 are separated by 31 nucleotides MMJJ_RS05480: MMJJ_RS05480 - 23S ribosomal RNA, at 1,022,470 to 1,025,437 _RS05480 MMJJ_RS05485: MMJJ_RS05485 - 5S ribosomal RNA, at 1,025,494 to 1,025,608 _RS05485 MMJJ_RS05490: MMJJ_RS05490 - imidazole glycerol phosphate synthase subunit HisF, at 1,025,682 to 1,026,500 _RS05490 MMJJ_RS05495: MMJJ_RS05495 - MinD/ParA family protein, at 1,026,532 to 1,027,320 _RS05495 Position (kb) 1025 1026Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1025.747 kb on - strandat 1025.858 kb on - strand, within MMJJ_RS05490at 1025.977 kb on + strand, within MMJJ_RS05490at 1026.093 kb on - strand, within MMJJ_RS05490at 1026.097 kb on - strand, within MMJJ_RS05490at 1026.252 kb on - strand, within MMJJ_RS05490at 1026.253 kb on + strand, within MMJJ_RS05490at 1026.271 kb on + strand, within MMJJ_RS05490at 1026.283 kb on + strand, within MMJJ_RS05490at 1026.565 kb on + strandat 1026.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Chlorite 0.3125 mM
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1,025,747 - -0.4
1,025,858 - MMJJ_RS05490 0.21 -0.1
1,025,977 + MMJJ_RS05490 0.36 -3.0
1,026,093 - MMJJ_RS05490 0.50 -2.2
1,026,097 - MMJJ_RS05490 0.51 +0.4
1,026,252 - MMJJ_RS05490 0.70 +0.4
1,026,253 + MMJJ_RS05490 0.70 -1.1
1,026,271 + MMJJ_RS05490 0.72 -2.2
1,026,283 + MMJJ_RS05490 0.73 -0.1
1,026,565 + -0.6
1,026,606 - +1.9

Or see this region's nucleotide sequence