Experiment: McCas_formate_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS08890 and MMJJ_RS08895 are separated by 129 nucleotides MMJJ_RS08895 and MMJJ_RS08900 are separated by 21 nucleotides MMJJ_RS08900 and MMJJ_RS08905 are separated by 59 nucleotides
MMJJ_RS08890: MMJJ_RS08890 - NAD(P)/FAD-dependent oxidoreductase, at 1,640,185 to 1,641,636
_RS08890
MMJJ_RS08895: MMJJ_RS08895 - tRNA-Ala, at 1,641,766 to 1,641,839
_RS08895
MMJJ_RS08900: MMJJ_RS08900 - DUF523 and DUF1722 domain-containing protein, at 1,641,861 to 1,642,829
_RS08900
MMJJ_RS08905: MMJJ_RS08905 - YcaO-related McrA-glycine thioamidation protein, at 1,642,889 to 1,644,091
_RS08905
Position (kb) 1641
1642
1643 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1640.862 kb on - strand, within MMJJ_RS08890 at 1640.862 kb on - strand, within MMJJ_RS08890 at 1640.863 kb on + strand, within MMJJ_RS08890 at 1640.863 kb on + strand, within MMJJ_RS08890 at 1640.864 kb on - strand, within MMJJ_RS08890 at 1640.864 kb on - strand, within MMJJ_RS08890 at 1640.864 kb on - strand, within MMJJ_RS08890 at 1640.864 kb on - strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.865 kb on + strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.866 kb on - strand, within MMJJ_RS08890 at 1640.867 kb on + strand, within MMJJ_RS08890 at 1640.867 kb on + strand, within MMJJ_RS08890 at 1640.867 kb on + strand, within MMJJ_RS08890 at 1640.867 kb on + strand, within MMJJ_RS08890 at 1640.867 kb on + strand, within MMJJ_RS08890 at 1640.867 kb on + strand, within MMJJ_RS08890 at 1640.867 kb on + strand, within MMJJ_RS08890 at 1640.867 kb on + strand, within MMJJ_RS08890 at 1640.968 kb on - strand, within MMJJ_RS08890 at 1640.968 kb on - strand, within MMJJ_RS08890 at 1640.969 kb on + strand, within MMJJ_RS08890 at 1641.032 kb on + strand, within MMJJ_RS08890 at 1641.033 kb on - strand, within MMJJ_RS08890 at 1641.035 kb on - strand, within MMJJ_RS08890 at 1641.112 kb on + strand, within MMJJ_RS08890 at 1641.115 kb on - strand at 1641.156 kb on - strand, within MMJJ_RS08890 at 1641.160 kb on + strand, within MMJJ_RS08890 at 1641.220 kb on + strand, within MMJJ_RS08890 at 1641.361 kb on - strand, within MMJJ_RS08890 at 1641.362 kb on + strand, within MMJJ_RS08890 at 1641.394 kb on - strand, within MMJJ_RS08890 at 1641.434 kb on + strand, within MMJJ_RS08890 at 1641.440 kb on - strand, within MMJJ_RS08890 at 1641.440 kb on - strand, within MMJJ_RS08890 at 1641.441 kb on + strand, within MMJJ_RS08890 at 1641.441 kb on + strand, within MMJJ_RS08890 at 1641.441 kb on + strand, within MMJJ_RS08890 at 1641.445 kb on + strand, within MMJJ_RS08890 at 1641.445 kb on + strand, within MMJJ_RS08890 at 1641.445 kb on + strand, within MMJJ_RS08890 at 1641.466 kb on - strand, within MMJJ_RS08890 at 1641.468 kb on - strand, within MMJJ_RS08890 at 1641.505 kb on - strand at 1641.542 kb on + strand at 1641.547 kb on + strand at 1641.551 kb on - strand at 1641.607 kb on + strand at 1641.686 kb on - strand at 1641.687 kb on + strand at 1641.715 kb on + strand at 1641.730 kb on + strand at 1641.730 kb on + strand at 1641.760 kb on - strand at 1641.760 kb on - strand at 1641.773 kb on - strand at 1641.874 kb on - strand at 1641.900 kb on + strand at 1641.950 kb on + strand at 1642.047 kb on - strand, within MMJJ_RS08900 at 1642.081 kb on + strand, within MMJJ_RS08900 at 1642.081 kb on + strand, within MMJJ_RS08900 at 1642.082 kb on - strand, within MMJJ_RS08900 at 1642.082 kb on - strand, within MMJJ_RS08900 at 1642.082 kb on - strand, within MMJJ_RS08900 at 1642.082 kb on - strand, within MMJJ_RS08900 at 1642.082 kb on - strand, within MMJJ_RS08900 at 1642.082 kb on - strand, within MMJJ_RS08900 at 1642.082 kb on - strand, within MMJJ_RS08900 at 1642.082 kb on - strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.083 kb on + strand, within MMJJ_RS08900 at 1642.084 kb on - strand, within MMJJ_RS08900 at 1642.095 kb on + strand, within MMJJ_RS08900 at 1642.095 kb on + strand, within MMJJ_RS08900 at 1642.109 kb on - strand, within MMJJ_RS08900 at 1642.112 kb on - strand, within MMJJ_RS08900 at 1642.211 kb on - strand, within MMJJ_RS08900 at 1642.218 kb on - strand, within MMJJ_RS08900 at 1642.243 kb on - strand, within MMJJ_RS08900 at 1642.244 kb on + strand, within MMJJ_RS08900 at 1642.244 kb on + strand, within MMJJ_RS08900 at 1642.244 kb on + strand, within MMJJ_RS08900 at 1642.244 kb on + strand, within MMJJ_RS08900 at 1642.250 kb on - strand, within MMJJ_RS08900 at 1642.263 kb on + strand, within MMJJ_RS08900 at 1642.335 kb on + strand, within MMJJ_RS08900 at 1642.337 kb on + strand, within MMJJ_RS08900 at 1642.338 kb on - strand, within MMJJ_RS08900 at 1642.339 kb on + strand, within MMJJ_RS08900 at 1642.363 kb on + strand, within MMJJ_RS08900 at 1642.377 kb on + strand, within MMJJ_RS08900 at 1642.418 kb on + strand, within MMJJ_RS08900 at 1642.418 kb on + strand, within MMJJ_RS08900 at 1642.419 kb on - strand, within MMJJ_RS08900 at 1642.420 kb on + strand, within MMJJ_RS08900 at 1642.420 kb on + strand, within MMJJ_RS08900 at 1642.420 kb on + strand, within MMJJ_RS08900 at 1642.420 kb on + strand, within MMJJ_RS08900 at 1642.480 kb on - strand, within MMJJ_RS08900 at 1642.542 kb on + strand, within MMJJ_RS08900 at 1642.594 kb on - strand, within MMJJ_RS08900 at 1642.595 kb on + strand, within MMJJ_RS08900 at 1642.602 kb on + strand, within MMJJ_RS08900 at 1642.610 kb on - strand, within MMJJ_RS08900 at 1642.611 kb on + strand, within MMJJ_RS08900 at 1642.620 kb on + strand, within MMJJ_RS08900 at 1642.681 kb on + strand, within MMJJ_RS08900 at 1642.698 kb on - strand, within MMJJ_RS08900 at 1642.699 kb on + strand, within MMJJ_RS08900 at 1642.699 kb on + strand, within MMJJ_RS08900 at 1642.709 kb on + strand, within MMJJ_RS08900 at 1642.718 kb on + strand, within MMJJ_RS08900 at 1642.725 kb on + strand, within MMJJ_RS08900 at 1642.858 kb on + strand at 1642.865 kb on - strand at 1642.879 kb on + strand at 1642.954 kb on - strand at 1642.971 kb on - strand at 1642.972 kb on + strand at 1642.972 kb on + strand at 1642.972 kb on + strand at 1642.984 kb on - strand at 1643.009 kb on - strand at 1643.009 kb on - strand at 1643.010 kb on + strand, within MMJJ_RS08905 at 1643.010 kb on + strand, within MMJJ_RS08905 at 1643.010 kb on + strand, within MMJJ_RS08905 at 1643.010 kb on + strand, within MMJJ_RS08905 at 1643.024 kb on - strand, within MMJJ_RS08905 at 1643.029 kb on - strand, within MMJJ_RS08905 at 1643.066 kb on - strand, within MMJJ_RS08905 at 1643.066 kb on - strand, within MMJJ_RS08905 at 1643.067 kb on + strand, within MMJJ_RS08905 at 1643.068 kb on - strand, within MMJJ_RS08905 at 1643.069 kb on + strand, within MMJJ_RS08905 at 1643.069 kb on + strand, within MMJJ_RS08905 at 1643.069 kb on + strand, within MMJJ_RS08905 at 1643.075 kb on - strand, within MMJJ_RS08905 at 1643.113 kb on - strand, within MMJJ_RS08905 at 1643.122 kb on - strand, within MMJJ_RS08905 at 1643.131 kb on - strand, within MMJJ_RS08905 at 1643.132 kb on + strand, within MMJJ_RS08905 at 1643.152 kb on - strand, within MMJJ_RS08905 at 1643.164 kb on - strand, within MMJJ_RS08905 at 1643.164 kb on - strand, within MMJJ_RS08905 at 1643.324 kb on + strand, within MMJJ_RS08905 at 1643.408 kb on - strand, within MMJJ_RS08905 at 1643.409 kb on + strand, within MMJJ_RS08905 at 1643.414 kb on + strand, within MMJJ_RS08905 at 1643.416 kb on - strand, within MMJJ_RS08905 at 1643.486 kb on - strand, within MMJJ_RS08905 at 1643.496 kb on - strand, within MMJJ_RS08905 at 1643.496 kb on - strand, within MMJJ_RS08905 at 1643.687 kb on + strand, within MMJJ_RS08905 at 1643.687 kb on + strand, within MMJJ_RS08905 at 1643.687 kb on + strand, within MMJJ_RS08905 at 1643.719 kb on - strand, within MMJJ_RS08905 at 1643.750 kb on - strand, within MMJJ_RS08905 at 1643.750 kb on - strand, within MMJJ_RS08905 at 1643.751 kb on + strand, within MMJJ_RS08905 at 1643.792 kb on - strand, within MMJJ_RS08905
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control remove 1,640,862 - MMJJ_RS08890 0.47 +0.5 1,640,862 - MMJJ_RS08890 0.47 +1.1 1,640,863 + MMJJ_RS08890 0.47 -3.3 1,640,863 + MMJJ_RS08890 0.47 -0.7 1,640,864 - MMJJ_RS08890 0.47 +0.5 1,640,864 - MMJJ_RS08890 0.47 +0.4 1,640,864 - MMJJ_RS08890 0.47 +0.0 1,640,864 - MMJJ_RS08890 0.47 -0.1 1,640,865 + MMJJ_RS08890 0.47 -0.7 1,640,865 + MMJJ_RS08890 0.47 +0.3 1,640,865 + MMJJ_RS08890 0.47 +1.1 1,640,865 + MMJJ_RS08890 0.47 -2.4 1,640,865 + MMJJ_RS08890 0.47 +3.3 1,640,865 + MMJJ_RS08890 0.47 +0.1 1,640,865 + MMJJ_RS08890 0.47 -0.2 1,640,865 + MMJJ_RS08890 0.47 -0.6 1,640,865 + MMJJ_RS08890 0.47 +1.2 1,640,866 - MMJJ_RS08890 0.47 -1.3 1,640,866 - MMJJ_RS08890 0.47 +0.0 1,640,866 - MMJJ_RS08890 0.47 -0.1 1,640,866 - MMJJ_RS08890 0.47 -0.3 1,640,866 - MMJJ_RS08890 0.47 +0.9 1,640,866 - MMJJ_RS08890 0.47 +0.7 1,640,866 - MMJJ_RS08890 0.47 +0.2 1,640,866 - MMJJ_RS08890 0.47 +0.2 1,640,866 - MMJJ_RS08890 0.47 -0.8 1,640,866 - MMJJ_RS08890 0.47 +1.3 1,640,866 - MMJJ_RS08890 0.47 +0.3 1,640,867 + MMJJ_RS08890 0.47 -1.6 1,640,867 + MMJJ_RS08890 0.47 +0.4 1,640,867 + MMJJ_RS08890 0.47 -4.6 1,640,867 + MMJJ_RS08890 0.47 +0.1 1,640,867 + MMJJ_RS08890 0.47 -0.2 1,640,867 + MMJJ_RS08890 0.47 +2.5 1,640,867 + MMJJ_RS08890 0.47 +1.3 1,640,867 + MMJJ_RS08890 0.47 -0.9 1,640,968 - MMJJ_RS08890 0.54 -0.3 1,640,968 - MMJJ_RS08890 0.54 -1.1 1,640,969 + MMJJ_RS08890 0.54 +1.3 1,641,032 + MMJJ_RS08890 0.58 +1.8 1,641,033 - MMJJ_RS08890 0.58 +0.1 1,641,035 - MMJJ_RS08890 0.59 +0.6 1,641,112 + MMJJ_RS08890 0.64 -0.5 1,641,115 - +1.9 1,641,156 - MMJJ_RS08890 0.67 +1.0 1,641,160 + MMJJ_RS08890 0.67 -0.4 1,641,220 + MMJJ_RS08890 0.71 +0.2 1,641,361 - MMJJ_RS08890 0.81 +0.5 1,641,362 + MMJJ_RS08890 0.81 +1.7 1,641,394 - MMJJ_RS08890 0.83 +0.5 1,641,434 + MMJJ_RS08890 0.86 -1.0 1,641,440 - MMJJ_RS08890 0.86 +0.6 1,641,440 - MMJJ_RS08890 0.86 +2.2 1,641,441 + MMJJ_RS08890 0.87 -0.4 1,641,441 + MMJJ_RS08890 0.87 +0.2 1,641,441 + MMJJ_RS08890 0.87 +0.0 1,641,445 + MMJJ_RS08890 0.87 -1.9 1,641,445 + MMJJ_RS08890 0.87 -0.6 1,641,445 + MMJJ_RS08890 0.87 +0.4 1,641,466 - MMJJ_RS08890 0.88 +1.4 1,641,468 - MMJJ_RS08890 0.88 -3.0 1,641,505 - +0.6 1,641,542 + -2.0 1,641,547 + +0.7 1,641,551 - -0.3 1,641,607 + -0.8 1,641,686 - -0.8 1,641,687 + +1.4 1,641,715 + +0.8 1,641,730 + +1.2 1,641,730 + -0.1 1,641,760 - +0.2 1,641,760 - -2.4 1,641,773 - -0.9 1,641,874 - -2.8 1,641,900 + +0.1 1,641,950 + -0.6 1,642,047 - MMJJ_RS08900 0.19 -1.3 1,642,081 + MMJJ_RS08900 0.23 -1.4 1,642,081 + MMJJ_RS08900 0.23 +0.1 1,642,082 - MMJJ_RS08900 0.23 -3.2 1,642,082 - MMJJ_RS08900 0.23 +0.6 1,642,082 - MMJJ_RS08900 0.23 +0.6 1,642,082 - MMJJ_RS08900 0.23 +0.5 1,642,082 - MMJJ_RS08900 0.23 +1.7 1,642,082 - MMJJ_RS08900 0.23 -0.4 1,642,082 - MMJJ_RS08900 0.23 -0.0 1,642,082 - MMJJ_RS08900 0.23 -0.1 1,642,083 + MMJJ_RS08900 0.23 +0.3 1,642,083 + MMJJ_RS08900 0.23 -1.3 1,642,083 + MMJJ_RS08900 0.23 +0.4 1,642,083 + MMJJ_RS08900 0.23 -0.0 1,642,083 + MMJJ_RS08900 0.23 +2.4 1,642,083 + MMJJ_RS08900 0.23 +2.7 1,642,083 + MMJJ_RS08900 0.23 +0.6 1,642,083 + MMJJ_RS08900 0.23 +0.7 1,642,083 + MMJJ_RS08900 0.23 +0.4 1,642,083 + MMJJ_RS08900 0.23 -0.9 1,642,083 + MMJJ_RS08900 0.23 -1.5 1,642,083 + MMJJ_RS08900 0.23 +0.8 1,642,083 + MMJJ_RS08900 0.23 -2.0 1,642,084 - MMJJ_RS08900 0.23 +0.8 1,642,095 + MMJJ_RS08900 0.24 -0.4 1,642,095 + MMJJ_RS08900 0.24 -0.9 1,642,109 - MMJJ_RS08900 0.26 -1.4 1,642,112 - MMJJ_RS08900 0.26 +0.1 1,642,211 - MMJJ_RS08900 0.36 -0.5 1,642,218 - MMJJ_RS08900 0.37 -0.3 1,642,243 - MMJJ_RS08900 0.39 +2.5 1,642,244 + MMJJ_RS08900 0.40 -1.9 1,642,244 + MMJJ_RS08900 0.40 +1.4 1,642,244 + MMJJ_RS08900 0.40 -0.7 1,642,244 + MMJJ_RS08900 0.40 -0.5 1,642,250 - MMJJ_RS08900 0.40 +0.2 1,642,263 + MMJJ_RS08900 0.41 -0.1 1,642,335 + MMJJ_RS08900 0.49 -1.6 1,642,337 + MMJJ_RS08900 0.49 +0.2 1,642,338 - MMJJ_RS08900 0.49 +1.1 1,642,339 + MMJJ_RS08900 0.49 -0.0 1,642,363 + MMJJ_RS08900 0.52 +1.5 1,642,377 + MMJJ_RS08900 0.53 +0.4 1,642,418 + MMJJ_RS08900 0.57 -0.4 1,642,418 + MMJJ_RS08900 0.57 +0.4 1,642,419 - MMJJ_RS08900 0.58 +0.4 1,642,420 + MMJJ_RS08900 0.58 -0.1 1,642,420 + MMJJ_RS08900 0.58 -0.7 1,642,420 + MMJJ_RS08900 0.58 +1.3 1,642,420 + MMJJ_RS08900 0.58 +0.3 1,642,480 - MMJJ_RS08900 0.64 -0.4 1,642,542 + MMJJ_RS08900 0.70 +0.8 1,642,594 - MMJJ_RS08900 0.76 -0.2 1,642,595 + MMJJ_RS08900 0.76 +0.7 1,642,602 + MMJJ_RS08900 0.76 -0.9 1,642,610 - MMJJ_RS08900 0.77 -0.4 1,642,611 + MMJJ_RS08900 0.77 -1.2 1,642,620 + MMJJ_RS08900 0.78 -1.1 1,642,681 + MMJJ_RS08900 0.85 -0.9 1,642,698 - MMJJ_RS08900 0.86 -1.0 1,642,699 + MMJJ_RS08900 0.86 +0.9 1,642,699 + MMJJ_RS08900 0.86 -0.5 1,642,709 + MMJJ_RS08900 0.88 +1.9 1,642,718 + MMJJ_RS08900 0.88 -0.8 1,642,725 + MMJJ_RS08900 0.89 +1.6 1,642,858 + +1.2 1,642,865 - -0.0 1,642,879 + -0.9 1,642,954 - +0.3 1,642,971 - -0.0 1,642,972 + -0.4 1,642,972 + -0.8 1,642,972 + +0.2 1,642,984 - +1.5 1,643,009 - +2.5 1,643,009 - +0.4 1,643,010 + MMJJ_RS08905 0.10 -0.1 1,643,010 + MMJJ_RS08905 0.10 +1.7 1,643,010 + MMJJ_RS08905 0.10 -0.1 1,643,010 + MMJJ_RS08905 0.10 -1.3 1,643,024 - MMJJ_RS08905 0.11 +1.1 1,643,029 - MMJJ_RS08905 0.12 -0.2 1,643,066 - MMJJ_RS08905 0.15 +0.5 1,643,066 - MMJJ_RS08905 0.15 +1.5 1,643,067 + MMJJ_RS08905 0.15 +0.8 1,643,068 - MMJJ_RS08905 0.15 +4.3 1,643,069 + MMJJ_RS08905 0.15 +0.9 1,643,069 + MMJJ_RS08905 0.15 +0.5 1,643,069 + MMJJ_RS08905 0.15 +0.2 1,643,075 - MMJJ_RS08905 0.15 +1.9 1,643,113 - MMJJ_RS08905 0.19 +1.3 1,643,122 - MMJJ_RS08905 0.19 +1.2 1,643,131 - MMJJ_RS08905 0.20 -0.7 1,643,132 + MMJJ_RS08905 0.20 +0.6 1,643,152 - MMJJ_RS08905 0.22 +0.8 1,643,164 - MMJJ_RS08905 0.23 +0.4 1,643,164 - MMJJ_RS08905 0.23 +0.1 1,643,324 + MMJJ_RS08905 0.36 +0.9 1,643,408 - MMJJ_RS08905 0.43 +1.3 1,643,409 + MMJJ_RS08905 0.43 +0.7 1,643,414 + MMJJ_RS08905 0.44 +1.2 1,643,416 - MMJJ_RS08905 0.44 -0.3 1,643,486 - MMJJ_RS08905 0.50 -1.7 1,643,496 - MMJJ_RS08905 0.50 +2.9 1,643,496 - MMJJ_RS08905 0.50 +0.8 1,643,687 + MMJJ_RS08905 0.66 +0.3 1,643,687 + MMJJ_RS08905 0.66 +0.9 1,643,687 + MMJJ_RS08905 0.66 +0.8 1,643,719 - MMJJ_RS08905 0.69 +0.5 1,643,750 - MMJJ_RS08905 0.72 -0.7 1,643,750 - MMJJ_RS08905 0.72 +1.0 1,643,751 + MMJJ_RS08905 0.72 +1.1 1,643,792 - MMJJ_RS08905 0.75 +1.7
Or see this region's nucleotide sequence